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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5257#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1311 fasta sequence
[TACATTGCGGATGCCTTAAGGGGATTAGCAGTGCGCCACCTATTTTTCTCAGCCTGGGGCTGTCACATAGGACGAAGACACAAGAAGAATAATACTTGCCACAAGTCTCACAGTGCTACATAGCCTCAAAGAGTAGCCACACAAATAAAAAAAATCATTTCTTTCTCCCTTATCCTCAGTCCGCTCCCCACCTACGCGCGCTTCTCCATCTCCGCCCACGCGCCTCGCCCCTTCTCCTCTCGCCGCACTTCCCCTTCCTCCTCCGGCGCGGCGGCGGCGCCGAACCACCCAGTTGCGGCGTCGAGCGGCGCGGCGGACGGGCGGCAGCGTGGAGCAGCGCAGTGGAAGGGTGGCGGCACGAACGGCCCGAGCGGCAACGCCAGAACTGGTCAACGGGGTGGCTCAAGCGCCTCCCCTCCTCCTCCTCTTCTGGCGCCGCGGATCGAGGGGCAGCGGCGGCGGCCGGCGGGACGGCCCGAGCGGCGGCGGGGTGGTCGAGCGGCGGCTCACATGATCAATACTCCCTCCGGCCACCTCCCTCGGCTCCCTCCCCTCCCCGTCCCCTCCGGCGGCGCTGGGCACAGGCCTCACCCTCTCCTCTTCCCGGCGGACGACNGGTGGCGGCGCCGCCGAGCTCGCCAGATCCGTCCTCGGATGGCGGCGGCGCCGAGCTCGCTAGATCTGCCTTCGGTCGGCAGCAATGACGACGATGGTAGTGGTCCATCTTTCCTTCCTCCCTTCTCTCCGGCGAGCTCGGGTGGTGGCCTCGCCGGCGACGCCCGTCGCCCCCTTGCATGGGGCCATGCCCTCTTCGGCGATGCTCTCCTCTCCCCGGCAGCGTCGGGCGGTGGAAGCGAGCGGGGTTTGGGGCGGTAGGACGACACGGCCCACGAGTGTGGGCCCCCCCTGTGAAACAAAGGAGGAACGGGGAGCCAAAGTTGGCTCCCCGGTCTTGGGCAAGCCGCGTGGATTGCCGACGTGGGGACGAATATTCCGTTTTTAGGGGTGAGGCTGAATGCCCCATGGGAGCATTGTGAATGGCCTAAGAGCAAGTTTAATAGTATAATCAACTACTAACTCCAAATCATCTATATCCAATGTAATAGCCAATTTATACAATAGTTGCTTGCTACACTATTAATATCTGGTCCCCCCTATCATACACATATTACGTCTTGGAGTCCGTGCTGCAGCTGGCTACAGATATGTAGCCCGCTTCTCTTCTCTCTCTTTTTTTATCTCTTTAAAATATGTTTATAGCTGGCTTATAGTCTGCTAGGGTACCTGGCTTATAACTTCTGGCGAAAAAAA]
[+] EMBL CB666295 [TACATTGCGGATGCCTTAAGGGGATTAGCAGTGCGCCACCTATTTTTCTCAGCCTGGGGCTGTCACATAGGACGAAGACACAAGAAGAATAATACTTGCCACAAGTCTCACAGTGCTACATAGCCTCAAAGAGTAGCCACACAAATAAAAAAAATCATTTCTTTCTCCCTTATCCTCAGTCCGCTCCCCACCTACGCGCGCTTCTCCATCTCCGCCCACGCGCCTCGCCCCTTCTCCTCTCGCCGCACTTCCCCTTCCTCCTCCGGCGCGGCGGCGGCGCCGAACCACCCAGTTGCGGCGTCGAGCGGCGCGGCGGACGGGCGGCAGCGTGGAGCAGCGCAGTGGAAGGGTGGCGGCACGAACGGCCCGAGCGGCAACGCCAGAACTGGTCAACGGGGTGGCTCAAGCGCCTCCCCTCCTCCTCCTCTTCTGGCGCCGCGGATCGAGGGGCAGCGGCGGCGGCCGGCGGGACGGCCCGAGCGGCGGCGGGGTGGTCGAGCGGCGGCTCACATGATCAATACTCCCTCCGGCCACCTCCCTCGGCTCCCTCCCCTCCCCGTCCCCTCCGGCGGCGCTGGGCACAGGCCTCACCCTCTCCTCTTCCCGGCGGACGACNGGTGGCGGCGCCGCCGAGCTCGCCAGATCCGTCCTCGGATGGCGGCGGCGCCGAGCTCGCTAGATCTGCCTTCGGTCGGCAGCAATGACGACGATGGTAGTGGTCCATCTTTCCTTCCTCCCTTCTCTCCGGCGAGCTCGGGTGGTGGCCTCGCCGGCGACGCCCGTCGCCCCCTTGCATGGGGCCATGCCCTCTTCGGCGATGCTCTC ]
[-] EMBL CB666296 [ ACCCTCTCCTCTTCCCGGCGGACGAC GGTGGCGGCGCCGCCGAGCTCGCCAGATCCGTCCTCGGATGGCGGCGGCGCCGAGCTCGCTAGATCTGCCTTCGGTCGGCAGCAATGACGACGATGGTAGTGGTCCATCTTTCCTTCCTCCCTTCTCTCCGGCGAGCTCGGGTGGTGGCCTCGCCGGNGACGCCCGTCGCCCCCTTGCATGGGGCCATGCCCTCTTCGGCGATGCTCTCCTCTCCCCGGCAGCGTCGGGCGGTGGAAGCGAGCGGGGTTTGGGGCGGTAGGACGACACGGCCCACGAGTGTGGGCCCCCCCTGTGAAACAAAGGAGGAACGGGGAGCCAAAGTTGGCTCCCCGGTCTTGGGCAAGCCGCGTGGATTGCCGACGTGGGGACGAATATTCCGTTTTTAGGGGTGAGGCTGAATGCCCCATGGGAGCATTGTGAATGGCCTAAGAGCAAGTTTAATAGTATAATCAACTACTAACTCCAAATCATCTATATCCAATGTAATAGCCAATTTATACAATAGTTGCTTGCTACACTATTAATATCTGGTCCCCCCTATCATACACATATTACGTCTTGGAGTCCGTGCTGCAGCTGGCTACAGATATGTAGCCCGCTTCTCTTCTCTCTCTTTTTTTATCTCTTTAAAATATGTTTATAGCTGGCTTATAGTCTGCTAGGGTACCTGGCTTATAACTTCTGGCGAAAAAAA]
consensusID : consensus_5257#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence
[GTGGAAGCGAGCCGGGGTTTTGGGGCCGGTAGGACGACCACGGCCCACGAGTGTTGGGCCCCACCCTGTGAAACCACAAGGAGGAACCACGGGGAGCCCACAAGTTGGCTCCACCGGGTTCTTGGGACAANGCCGCGCTGGATTTGCCGAACGCTGGGGACGAATATTTCCGTTTCTAGGGGGTGAGGCTGAATGCCAACAGTGGGAGCACTTGTGAATGGCCTAAGAGCAAGTTTAATAGTATAATCAACTATTAACCTCCAAATCATCTATATCCATGTAATAGCCATTTATACATAGTTGCTTGCTACACTAAAAAA]
[+] EMBL BQ908893 [GTGGAAGCGAGCCGGGGTTTTGGGGCCGGTAGGACGACCACGGCCCACGAGTGTTGGGCCCCACCCTGTGAAACCACAAGGAGGAACCACGGGGAGCCCACAAGTTGGCTCCACCGGGTTCTTGGGACAANGCCGCGCTGGATTTGCCGAACGCTGGGGACGAATATTTCCGTTTCTAGGGGGTGAGGCTGAATGCCAACAGTGGGAGCACTTGTGAATGGCCTAAGAGCAAGTTTAATAGTATAATCAACTATTAACCTCCAAATCATCTATATCCATGTAATAGCCATTTATACATAGTTGCTTGCTACACTAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5257#0 TACATTGCGGATGCCTTAAGGGGATTAGCAGTGCGCCACCTATTTTTCTCAGCCTGGGGC 60
consensus_5257#1 ------------------------------------------------------------
consensus_5257#0 TGTCACATAGGACGAAGACACAAGAAGAATAATACTTGCCACAAGTCTCACAGTGCTACA 120
consensus_5257#1 ------------------------------------------------------------
consensus_5257#0 TAGCCTCAAAGAGTAGCCACACAAATAAAAAAAATCATTTCTTTCTCCCTTATCCTCAGT 180
consensus_5257#1 ------------------------------------------------------------
consensus_5257#0 CCGCTCCCCACCTACGCGCGCTTCTCCATCTCCGCCCACGCGCCTCGCCCCTTCTCCTCT 240
consensus_5257#1 ------------------------------------------------------------
consensus_5257#0 CGCCGCACTTCCCCTTCCTCCTCCGGCGCGGCGGCGGCGCCGAACCACCCAGTTGCGGCG 300
consensus_5257#1 ------------------------------------------------------------
consensus_5257#0 TCGAGCGGCGCGGCGGACGGGCGGCAGCGTGGAGCAGCGCAGTGGAAGGGTGGCGGCACG 360
consensus_5257#1 ------------------------------------------------------------
consensus_5257#0 AACGGCCCGAGCGGCAACGCCAGAACTGGTCAACGGGGTGGCTCAAGCGCCTCCCCTCCT 420
consensus_5257#1 ------------------------------------------------------------
consensus_5257#0 CCTCCTCTTCTGGCGCCGCGGATCGAGGGGCAGCGGCGGCGGCCGGCGGGACGGCCCGAG 480
consensus_5257#1 ------------------------------------------------------------
consensus_5257#0 CGGCGGCGGGGTGGTCGAGCGGCGGCTCACATGATCAATACTCCCTCCGGCCACCTCCCT 540
consensus_5257#1 ------------------------------------------------------------
consensus_5257#0 CGGCTCCCTCCCCTCCCCGTCCCCTCCGGCGGCGCTGGGCACAGGCCTCACCCTCTCCTC 600
consensus_5257#1 ------------------------------------------------------------
consensus_5257#0 TTCCCGGCGGACGACNGGTGGCGGCGCCGCCGAGCTCGCCAGATCCGTCCTCGGATGGCG 660
consensus_5257#1 ------------------------------------------------------------
consensus_5257#0 GCGGCGCCGAGCTCGCTAGATCTGCCTTCGGTCGGCAGCAATGACGACGATGGTAGTGGT 720
consensus_5257#1 ------------------------------------------------------------
consensus_5257#0 CCATCTTTCCTTCCTCCCTTCTCTCCGGCGAGCTCGGGTGGTGGCCTCGCCGGCGACGCC 780
consensus_5257#1 ------------------------------------------------------------
consensus_5257#0 CGTCGCCCCCTTGCATGGGGCCATGCCCTCTTCGGCGATGCTCTCCTCTCCCCGGCAGCG 840
consensus_5257#1 ------------------------------------------------------------
consensus_5257#0 TCGGGCGGTGGAAGCGAGCGGGG--TTTGGGGC-GGTAGGACGAC-ACGGCCCACGAGTG 896
consensus_5257#1 -------GTGGAAGCGAGCCGGGGTTTTGGGGCCGGTAGGACGACCACGGCCCACGAGTG 53
************ *** ******** *********** **************
consensus_5257#0 T-GGGCCCC-CCCTGTGAAACAA--AGGAGGAAC---GGGGAGCCAA--AGTTGGCTCC- 946
consensus_5257#1 TTGGGCCCCACCCTGTGAAACCACAAGGAGGAACCACGGGGAGCCCACAAGTTGGCTCCA 113
* ******* *********** * ********* ******** * **********
consensus_5257#0 CCGG--TCTTGGGC--AAGCCGCG-TGGATT-GCCGA-CG-TGGGGACGAATATT-CCGT 997
consensus_5257#1 CCGGGTTCTTGGGACAANGCCGCGCTGGATTTGCCGAACGCTGGGGACGAATATTTCCGT 173
**** ******* * ****** ****** ***** ** ************** ****
consensus_5257#0 TTTTAGGGG-TGAGGCTGAATGCC--CCATGGGAGCA-TTGTGAATGGCCTAAGAGCAAG 1053
consensus_5257#1 TTCTAGGGGGTGAGGCTGAATGCCAACAGTGGGAGCACTTGTGAATGGCCTAAGAGCAAG 233
** ****** ************** * ******** **********************
consensus_5257#0 TTTAATAGTATAATCAACTACTAAC-TCCAAATCATCTATATCCAATGTAATAGCCAATT 1112
consensus_5257#1 TTTAATAGTATAATCAACTATTAACCTCCAAATCATCTATATCCA-TGTAATAGCCA-TT 291
******************** **** ******************* *********** **
consensus_5257#0 TATACAATAGTTGCTTGCTACACTATTAATATCTGGTCCCCCCTATCATACACATATTAC 1172
consensus_5257#1 TATACA-TAGTTGCTTGCTACACTAAAAAA------------------------------ 320
****** ****************** **
consensus_5257#0 GTCTTGGAGTCCGTGCTGCAGCTGGCTACAGATATGTAGCCCGCTTCTCTTCTCTCTCTT 1232
consensus_5257#1 ------------------------------------------------------------
consensus_5257#0 TTTTTATCTCTTTAAAATATGTTTATAGCTGGCTTATAGTCTGCTAGGGTACCTGGCTTA 1292
consensus_5257#1 ------------------------------------------------------------
consensus_5257#0 TAACTTCTGGCGAAAAAAA 1311
consensus_5257#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||