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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_526#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1915 fasta sequence
[GCCTTCCTCGCCCGCTTCCCCGACGCCGAGGACGACGCCCTCGACCTCCTCCTCGACGAGCTCGACAAGGAGCCGCTGCAGTCGTCGATTCTTGACCGGGACGCGGTGCGGCGCGTGGTGGCGCTGCTCGTCGAGGCGGACGAGGCGGTGGATGCGGCGTCTCCGGCGGCCACCAGCGCGCGCTCGGCGCTGCGGGTGGTGGATTCGTTCGTCGTGCCAAGGTTCCACTACGATCCGATCAAGAAAGTCTTCTACGAGCATACCAGCAGATTAGCCATACATGGAGAAGCTGGAGATAAAGCAGCCCTGTACAGGGACAGGTATCAGGTTCTGCTTCAGAGGCTAGCTCGTGATATATACTTCTCTAAGCCAGCTTTTGACACTGTTATGACCGAAGATGATAATTGTGAGATAACTTCTATTCAGTCCCTAATTGGGTGCACTGGTCGGAGATGGATTATGGGGGTCATATCACAGTTGGAGGAACGTCAATTCTACTTGGAGGATCTTACTGGAGCTGTGCCAATTGACTTATCGAATGCTAAAATCACTTCAGGTTTCTTCGTTGAAAATACTGTAATTGTAGCAGAAGGGGAATTGCTTTCAAATGGCATTTTCCAGGTAAATACATGTGGATTCCCTCCTTTAGAGGATAGAGAAGCATCACTTTCGATGCTTATGGGGCTAGATTTCTTCGGTGGAGGTGTCATACCAACTGAAGAAACAGTAAGGCTATCAACCTTAGAGAAGAAGGCCATGAATGATATGTTTGTTATACTTTCAGATGTTTGGCTTGACAATTATGAGACCATGGAGAAATTAGGTGTTGTTCTTGATGGTTATGATAGTCTAGAAGCAGTTCCTTCCCTTTTTGTTTTAATGGGCAATTTCTGCTCCCGGCCCTGCAATCTGGCATTCAATTCATTTGAAGAACTCAGATTGCAGTTCGGAAAGCTTGGTGAGATGATTGCAGCTCGATCCAGGTTAAAGGAACACAGTCGCTTTTTGTTCATTCCTGGTCCTGACGACGCAGGCCCTTCTAAAGCCCTTCCAAGGTGTGCACTTCCGAAATATCTAACTGAGGAACTGCAGAAGCACATCCCAAATGCAATATTCGTAAGCAACCCTTGCAGGGTGAAGTTTTATACACAAGAAATTGTATTTTTCCGGCAAGACCTCCTTTATAGGATGCGGCGGTCTTGTCTGATTCCCCCAACAACAGAAGAAACAAGTGACCCTTTCGAGCATCTGGTAGCAACCATCACCCATCAGAGTCATCTTTGCCCATTGCCTCTTACAGTTCAGCCAATCATATGGAGCTACGATCATTGCCTTCGACTCTATCCTACTCCTCATACGATAGTACTGGGCGACAAGAGCGACCAGAAGGCCTTCAAATACACAGGAATAACTTGCTTCAACCCTGGTTCTTTTGCTAACGATAGCACCTTTGCAGCTTACCGTCCTTGCACTAAGGAGGTTGAGCTTTCTGCATTAGAAAGCTAATATTAAAGAGATCAAAATGAGGCTCACCAATTTGGCCAATTTGGTAGCCTGTACCATCCAAACTAGCATTCTCCAAATCTTCGATGAACTGCCTATCGCCTTGGACATCAGCCTGATATTTATGACTTGGACATACAAGTTAAGGTGGAGGCCATTTTCATGCAAGCTAATTCGAGGAGATGACATAACATGCATGACGCCATGGTTGGTGTTTCTCTCAAGCAAACTGATGCTGACATTTAGATGGCATCATGGTAGTGGTTTTCTTATAACAAGGATTGAAATTATACTTAGCATAGCAGAATATTTGTGATGTATTTTGCTTAAGCCATTCTACTTTGAAATATCTAGGCTTAAATTGTTGTAAACCAAGGTAACAAAAGTGCTGCTTTCTTGTTCCTTCAAAGGT]
[+] EMBL AK073230 [GCCTTCCTCGCCCGCTTCCCCGACGCCGAGGACGACGCCCTCGACCTCCTCCTCGACGAGCTCGACAAGGAGCCGCTGCAGTCGTCGATTCTTGACCGGGACGCGGTGCGGCGCGTGGTGGCGCTGCTCGTCGAGGCGGACGAGGCGGTGGATGCGGCGTCTCCGGCGGCCACCAGCGCGCGCTCGGCGCTGCGGGTGGTGGATTCGTTCGTCGTGCCAAGGTTCCACTACGATCCGATCAAGAAAGTCTTCTACGAGCATACCAGCAGATTAGCCATACATGGAGAAGCTGGAGATAAAGCAGCCCTGTACAGGGACAGGTATCAGGTTCTGCTTCAGAGGCTAGCTCGTGATATATACTTCTCTAAGCCAGCTTTTGACACTGTTATGACCGAAGATGATAATTGTGAGATAACTTCTATTCAGTCCCTAATTGGGTGCACTGGTCGGAGATGGATTATGGGGGTCATATCACAGTTGGAGGAACGTCAATTCTACTTGGAGGATCTTACTGGAGCTGTGCCAATTGACTTATCGAATGCTAAAATCACTTCAGGTTTCTTCGTTGAAAATACTGTAATTGTAGCAGAAGGGGAATTGCTTTCAAATGGCATTTTCCAGGTAAATACATGTGGATTCCCTCCTTTAGAGGATAGAGAAGCATCACTTTCGATGCTTATGGGGCTAGATTTCTTCGGTGGAGGTGTCATACCAACTGAAGAAACAGTAAGGCTATCAACCTTAGAGAAGAAGGCCATGAATGATATGTTTGTTATACTTTCAGATGTTTGGCTTGACAATTATGAGACCATGGAGAAATTAGGTGTTGTTCTTGATGGTTATGATAGTCTAGAAGCAGTTCCTTCCCTTTTTGTTTTAATGGGCAATTTCTGCTCCCGGCCCTGCAATCTGGCATTCAATTCATTTGAAGAACTCAGATTGCAGTTCGGAAAGCTTGGTGAGATGATTGCAGCTCGATCCAGGTTAAAGGAACACAGTCGCTTTTTGTTCATTCCTGGTCCTGACGACGCAGGCCCTTCTAAAGCCCTTCCAAGGTGTGCACTTCCGAAATATCTAACTGAGGAACTGCAGAAGCACATCCCAAATGCAATATTCGTAAGCAACCCTTGCAGGGTGAAGTTTTATACACAAGAAATTGTATTTTTCCGGCAAGACCTCCTTTATAGGATGCGGCGGTCTTGTCTGATTCCCCCAACAACAGAAGAAACAAGTGACCCTTTCGAGCATCTGGTAGCAACCATCACCCATCAGAGTCATCTTTGCCCATTGCCTCTTACAGTTCAGCCAATCATATGGAGCTACGATCATTGCCTTCGACTCTATCCTACTCCTCATACGATAGTACTGGGCGACAAGAGCGACCAGAAGGCCTTCAAATACACAGGAATAACTTGCTTCAACCCTGGTTCTTTTGCTAACGATAGCACCTTTGCAGCTTACCGTCCTTGCACTAAGGAGGTTGAGCTTTCTGCATTAGAAAGCTAATATTAAAGAGATCAAAATGAGGCTCACCAATTTGGCCAATTTGGTAGCCTGTACCATCCAAACTAGCATTCTCCAAATCTTCGATGAACTGCCTATCGCCTTGGACATCAGCCTGATATTTATGACTTGGACATACAAGTTAAGGTGGAGGCCATTTTCATGCAAGCTAATTCGAGGAGATGACATAACATGCATGACGCCATGGTTGGTGTTTCTCTCAAGCAAACTGATGCTGACATTTAGATGGCATCATGGTAGTGGTTTTCTTATAACAAGGATTGAAATTATACTTAGCATAGCAGAATATTTGTGATGTATTTTGCTTAAGCCATTCTACTTTGAAATATCTAGGCTTAAATTGTTGTAAACCAAGGTAACAAAAGTGCTGCTTTCTTGTTCCTTCAAAGGT]
consensusID : consensus_526#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence
[AGGCATGACCCCATCGCTACAATATGGCATACCAGCAGATTACTCATCCATGGAGAAGCTGGAGATAAAGCAGCCCTATACAGGGATAGGTATCAGGTTCTGCTTTAGAGGCTTGCTCGTGACAAATACTTTTTTAATTTCTTCTTTTGACACTGTTATGACCGAAGATGATAATTGTGAGATAACTTCTATACAGTCTCTAATTGGGTGCACTGGTCGGAGATGGATTATGGGGGTCATATCACAGTTGGAGGAACGCCAATTCTACTTGGAGGATCTTACTGGAGCTGTGCCAATTGACTTATCAAATGCTAAAATCACCTCAGGTTTCTTCGTTGAAAACACCGTCGTTTTAGCAGAAGGGGAATTGCTTTCAAATGGCATTTTCCAGGTAAATACATGTGGATTTCCTCCTTTAGAGGATAGGGAAGCATCACTTTC]
[+] EMBL CF307407 [AGGCATGACCCCATCGCTACAATATGGCATACCAGCAGATTACTCATCCATGGAGAAGCTGGAGATAAAGCAGCCCTATACAGGGATAGGTATCAGGTTCTGCTTTAGAGGCTTGCTCGTGACAAATACTTTTTTAATTTCTTCTTTTGACACTGTTATGACCGAAGATGATAATTGTGAGATAACTTCTATACAGTCTCTAATTGGGTGCACTGGTCGGAGATGGATTATGGGGGTCATATCACAGTTGGAGGAACGCCAATTCTACTTGGAGGATCTTACTGGAGCTGTGCCAATTGACTTATCAAATGCTAAAATCACCTCAGGTTTCTTCGTTGAAAACACCGTCGTTTTAGCAGAAGGGGAATTGCTTTCAAATGGCATTTTCCAGGTAAATACATGTGGATTTCCTCCTTTAGAGGATAGGGAAGCATCACTTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_526#0 GCCTTCCTCGCCCGCTTCCCCGACGCCGAGGACGACGCCCTCGACCTCCTCCTCGACGAG 60
consensus_526#1 ------------------------------------------------------------
consensus_526#0 CTCGACAAGGAGCCGCTGCAGTCGTCGATTCTTGACCGGGACGCGGTGCGGCGCGTGGTG 120
consensus_526#1 ------------------------------------------------------------
consensus_526#0 GCGCTGCTCGTCGAGGCGGACGAGGCGGTGGATGCGGCGTCTCCGGCGGCCACCAGCGCG 180
consensus_526#1 ------------------------------------------------------------
consensus_526#0 CGCTCGGCGCTGCGGGTGGTGGATTCGTTCGTCGTGCCAAGGTTCCACTACGATCCGATC 240
consensus_526#1 ---------------------------------------------AGGCATGACCCCATC 15
* ** ** ***
consensus_526#0 AAGAAAGTCTTCTACGAGCATACCAGCAGATTAGCCATACATGGAGAAGCTGGAGATAAA 300
consensus_526#1 GCTACAATAT------GGCATACCAGCAGATTACTCATCCATGGAGAAGCTGGAGATAAA 69
* * * * **************** *** *********************
consensus_526#0 GCAGCCCTGTACAGGGACAGGTATCAGGTTCTGCTTCAGAGGCTAGCTCGTGATATATAC 360
consensus_526#1 GCAGCCCTATACAGGGATAGGTATCAGGTTCTGCTTTAGAGGCTTGCTCGTGACAAATAC 129
******** ******** ****************** ******* ******** * ****
consensus_526#0 TTCTCTAAGC-CAGCTTTTGACACTGTTATGACCGAAGATGATAATTGTGAGATAACTTC 419
consensus_526#1 TTTTTTAATTTCTTCTTTTGACACTGTTATGACCGAAGATGATAATTGTGAGATAACTTC 189
** * *** * **********************************************
consensus_526#0 TATTCAGTCCCTAATTGGGTGCACTGGTCGGAGATGGATTATGGGGGTCATATCACAGTT 479
consensus_526#1 TATACAGTCTCTAATTGGGTGCACTGGTCGGAGATGGATTATGGGGGTCATATCACAGTT 249
*** ***** **************************************************
consensus_526#0 GGAGGAACGTCAATTCTACTTGGAGGATCTTACTGGAGCTGTGCCAATTGACTTATCGAA 539
consensus_526#1 GGAGGAACGCCAATTCTACTTGGAGGATCTTACTGGAGCTGTGCCAATTGACTTATCAAA 309
********* *********************************************** **
consensus_526#0 TGCTAAAATCACTTCAGGTTTCTTCGTTGAAAATACTGTAATTGTAGCAGAAGGGGAATT 599
consensus_526#1 TGCTAAAATCACCTCAGGTTTCTTCGTTGAAAACACCGTCGTTTTAGCAGAAGGGGAATT 369
************ ******************** ** ** ** ****************
consensus_526#0 GCTTTCAAATGGCATTTTCCAGGTAAATACATGTGGATTCCCTCCTTTAGAGGATAGAGA 659
consensus_526#1 GCTTTCAAATGGCATTTTCCAGGTAAATACATGTGGATTTCCTCCTTTAGAGGATAGGGA 429
*************************************** ***************** **
consensus_526#0 AGCATCACTTTCGATGCTTATGGGGCTAGATTTCTTCGGTGGAGGTGTCATACCAACTGA 719
consensus_526#1 AGCATCACTTTC------------------------------------------------ 441
************
consensus_526#0 AGAAACAGTAAGGCTATCAACCTTAGAGAAGAAGGCCATGAATGATATGTTTGTTATACT 779
consensus_526#1 ------------------------------------------------------------
consensus_526#0 TTCAGATGTTTGGCTTGACAATTATGAGACCATGGAGAAATTAGGTGTTGTTCTTGATGG 839
consensus_526#1 ------------------------------------------------------------
consensus_526#0 TTATGATAGTCTAGAAGCAGTTCCTTCCCTTTTTGTTTTAATGGGCAATTTCTGCTCCCG 899
consensus_526#1 ------------------------------------------------------------
consensus_526#0 GCCCTGCAATCTGGCATTCAATTCATTTGAAGAACTCAGATTGCAGTTCGGAAAGCTTGG 959
consensus_526#1 ------------------------------------------------------------
consensus_526#0 TGAGATGATTGCAGCTCGATCCAGGTTAAAGGAACACAGTCGCTTTTTGTTCATTCCTGG 1019
consensus_526#1 ------------------------------------------------------------
consensus_526#0 TCCTGACGACGCAGGCCCTTCTAAAGCCCTTCCAAGGTGTGCACTTCCGAAATATCTAAC 1079
consensus_526#1 ------------------------------------------------------------
consensus_526#0 TGAGGAACTGCAGAAGCACATCCCAAATGCAATATTCGTAAGCAACCCTTGCAGGGTGAA 1139
consensus_526#1 ------------------------------------------------------------
consensus_526#0 GTTTTATACACAAGAAATTGTATTTTTCCGGCAAGACCTCCTTTATAGGATGCGGCGGTC 1199
consensus_526#1 ------------------------------------------------------------
consensus_526#0 TTGTCTGATTCCCCCAACAACAGAAGAAACAAGTGACCCTTTCGAGCATCTGGTAGCAAC 1259
consensus_526#1 ------------------------------------------------------------
consensus_526#0 CATCACCCATCAGAGTCATCTTTGCCCATTGCCTCTTACAGTTCAGCCAATCATATGGAG 1319
consensus_526#1 ------------------------------------------------------------
consensus_526#0 CTACGATCATTGCCTTCGACTCTATCCTACTCCTCATACGATAGTACTGGGCGACAAGAG 1379
consensus_526#1 ------------------------------------------------------------
consensus_526#0 CGACCAGAAGGCCTTCAAATACACAGGAATAACTTGCTTCAACCCTGGTTCTTTTGCTAA 1439
consensus_526#1 ------------------------------------------------------------
consensus_526#0 CGATAGCACCTTTGCAGCTTACCGTCCTTGCACTAAGGAGGTTGAGCTTTCTGCATTAGA 1499
consensus_526#1 ------------------------------------------------------------
consensus_526#0 AAGCTAATATTAAAGAGATCAAAATGAGGCTCACCAATTTGGCCAATTTGGTAGCCTGTA 1559
consensus_526#1 ------------------------------------------------------------
consensus_526#0 CCATCCAAACTAGCATTCTCCAAATCTTCGATGAACTGCCTATCGCCTTGGACATCAGCC 1619
consensus_526#1 ------------------------------------------------------------
consensus_526#0 TGATATTTATGACTTGGACATACAAGTTAAGGTGGAGGCCATTTTCATGCAAGCTAATTC 1679
consensus_526#1 ------------------------------------------------------------
consensus_526#0 GAGGAGATGACATAACATGCATGACGCCATGGTTGGTGTTTCTCTCAAGCAAACTGATGC 1739
consensus_526#1 ------------------------------------------------------------
consensus_526#0 TGACATTTAGATGGCATCATGGTAGTGGTTTTCTTATAACAAGGATTGAAATTATACTTA 1799
consensus_526#1 ------------------------------------------------------------
consensus_526#0 GCATAGCAGAATATTTGTGATGTATTTTGCTTAAGCCATTCTACTTTGAAATATCTAGGC 1859
consensus_526#1 ------------------------------------------------------------
consensus_526#0 TTAAATTGTTGTAAACCAAGGTAACAAAAGTGCTGCTTTCTTGTTCCTTCAAAGGT 1915
consensus_526#1 --------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||