cluster # 5261

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Oryza sativa
cluster # 5261 cluster # 5261 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5261#0 length = 475 sequences # 2

consensus_5261#1 length = 395 sequences # 1

consensusID : consensus_5261#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 475
fasta sequence

                              [TACTCTCCTTTAACAACTGAGCAAAATGTTGGCGTATGTGTGCTGGGAGGTGGATGATTTATTTACACTCGCAAGAATTTTGGTGGGTTAGGCCAAAAGATTGACACTACACCTCTGACGGGCTAACCCAAACCCTCATCTTTAACGGCTTCGCGCATGGTTAGTGATCTGTGGTCACTGGTGAGTCCAGACACCTTTGACGGGTGGCCGGCCATCACAGGTGACACCCACCTCTGACGGGCAAGTTACTAGAAGGCCGTCAGAGGTGTTGGTCTCCGCTAGCCTAGGGCGAGTTGGGACCCGTCACAGGTGACTTATCTCTGACGGCCTTTAAATAAAGGCCGTTAGAGGTGATGGTCTCCGTAGGTATAAGCTGTCACAGGTGATCTACCTGTGACGGNCCCAAAAGTAAAGGGCCATCACAGGTAGGTCAACTCTGACGGGGCTTTATTTGCTAATCCGTNACAGGTGAGGT]

[+] EMBL OSS15394A            [TACTCTCCTTTAACAACTGAGCAAAATGTTGGCGTATGTGTGCTGGGAGGTGGATGATTTATTTACACTCGCAAGAATTTTGGTGGGTTAGGCCAAAAGATTGACACTACACCTCTGACGGGCTAACCCAAACCCTCATCTTTAACGGCTTCGCGCATGGTTAGTGATCTGTGGTCACTGGTGAGTCCAGACACCTTTGACGGGTGGCCGGCCATCACAGGTGACACCCACCTCTGACGGGCAAGTTACTAGAAGGCCGTCAGAGGTGTTGGTCTCCGCTAGCCTAGGGCGAGTTGGGACCCGTCACAGGTGACTTATCTCTGACGGCCTTTAAATAAAGGCCGTTAGAGGTGATGGTCTCCGTAGGTATAAGCTGTCACAGGTGATCTACCTGTGACGGNCCCAAAAGTAAAGGGCCATCACAGGTAGGTCAACTCTGACGGGGCTTTATTTGCTAATCCGTNACAGGTGAGGT]
[+] EMBL AU065946             [TACTCTCCTTTAACAACTGAGCAAAATGTTGGCGTATGTGTGCTGGGAGGTGGATGATTTATTTACACTCGCAAGAATTTTGGTGGGTTAGGCCAAAAGATTGACACTACACCTCTGACGGGCTAACCCAAACCCTCATCTTTAACGGCTTCGCGCATGGTTAGTGATCTGTGGTCACTGGTGAGTCCAGACACCTTTGACGGGTGGCCGGCCATCACAGGTGACACCCACCTCTGACGGGCAAGTTACTAGAAGGCCGTCAGAGGTGTTGGTCTCCGCTAGCCTAGGGCGAGTTGGGACCCGTCACAGGTGACTTATCTCTGACGGCCTTTAAATAAAGGCCGTTAGAGGTGATGGTCTCCNTAGATATAAGCTGTCACAGG                                                                                            ]




>consensus_5261#0
TACTCTCCTTTAACAACTGAGCAAAATGTTGGCGTATGTGTGCTGGGAGGTGGATGATTT
ATTTACACTCGCAAGAATTTTGGTGGGTTAGGCCAAAAGATTGACACTACACCTCTGACG
GGCTAACCCAAACCCTCATCTTTAACGGCTTCGCGCATGGTTAGTGATCTGTGGTCACTG
GTGAGTCCAGACACCTTTGACGGGTGGCCGGCCATCACAGGTGACACCCACCTCTGACGG
GCAAGTTACTAGAAGGCCGTCAGAGGTGTTGGTCTCCGCTAGCCTAGGGCGAGTTGGGAC
CCGTCACAGGTGACTTATCTCTGACGGCCTTTAAATAAAGGCCGTTAGAGGTGATGGTCT
CCGTAGGTATAAGCTGTCACAGGTGATCTACCTGTGACGGNCCCAAAAGTAAAGGGCCAT
CACAGGTAGGTCAACTCTGACGGGGCTTTATTTGCTAATCCGTNACAGGTGAGGT

consensusID : consensus_5261#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 395
fasta sequence

                              [CCGGGGCAAANGTTTAACTTAGAAAGGCCCGTCCAAGAAGGTCGNTTCCGGTACTACCCAGCATNAAGCCCTTAAGGTGCCGAAGTTCGGGAACCCGTTCANCAGGTTGAACTCTATCCTNCTTGACATGCCCCTTTAAATAAAGGCCGTTAGAGGTGATGGTCTCCGTAGATATAAGCTGTCACAGGTGATCTACCTGTGACGGCCCCAAAAGTAAAGGCCCATCACAGGTAGCNCTCACCNCTNGACGGGCCTTTATTTGCTAATCCGTCACAGGTGAGGTTACCTTTGACGGATTTTTGTTTCGACCCGTCACTGATGAGTTAATTCCAGAAAAAAAAATGCTAAATATTGGTTAGCCTCAGGATTTGCTAGCCATGCCCTCTGAAAAAAAA]

[+] EMBL AU089785             [CCGGGGCAAANGTTTAACTTAGAAAGGCCCGTCCAAGAAGGTCGNTTCCGGTACTACCCAGCATNAAGCCCTTAAGGTGCCGAAGTTCGGGAACCCGTTCANCAGGTTGAACTCTATCCTNCTTGACATGCCCCTTTAAATAAAGGCCGTTAGAGGTGATGGTCTCCGTAGATATAAGCTGTCACAGGTGATCTACCTGTGACGGCCCCAAAAGTAAAGGCCCATCACAGGTAGCNCTCACCNCTNGACGGGCCTTTATTTGCTAATCCGTCACAGGTGAGGTTACCTTTGACGGATTTTTGTTTCGACCCGTCACTGATGAGTTAATTCCAGAAAAAAAAATGCTAAATATTGGTTAGCCTCAGGATTTGCTAGCCATGCCCTCTGAAAAAAAA]




>consensus_5261#1
CCGGGGCAAANGTTTAACTTAGAAAGGCCCGTCCAAGAAGGTCGNTTCCGGTACTACCCA
GCATNAAGCCCTTAAGGTGCCGAAGTTCGGGAACCCGTTCANCAGGTTGAACTCTATCCT
NCTTGACATGCCCCTTTAAATAAAGGCCGTTAGAGGTGATGGTCTCCGTAGATATAAGCT
GTCACAGGTGATCTACCTGTGACGGCCCCAAAAGTAAAGGCCCATCACAGGTAGCNCTCA
CCNCTNGACGGGCCTTTATTTGCTAATCCGTCACAGGTGAGGTTACCTTTGACGGATTTT
TGTTTCGACCCGTCACTGATGAGTTAATTCCAGAAAAAAAAATGCTAAATATTGGTTAGC
CTCAGGATTTGCTAGCCATGCCCTCTGAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5261#0      TACTCTCCTTTAACAACTGAGCAAAATGTTGGCGTATGTGTGCTGGG--AGGTGGATGAT 58
consensus_5261#1      ---------------CCGGGGCAAANGTTTAACTTAGAAAGGCCCGTCCAAGAAGGTCGN 45
                                      * * *****   **  * **     **  *   * *  * *   

consensus_5261#0      TTATTTACACTCGCAAGAATTTTGGTGGGTTAGGCCAAAAGATTGACACTACACCTCTGA 118
consensus_5261#1      TT-CCGGTACTACCCAGCATNAAGCCCTTAAGGTGCCGAAGTTCGGGA--ACCCGTTCAN 102
                      **      ***  * ** **   *        *  *  *** * *  *  ** * *    

consensus_5261#0      CGGGCTAACCCAAACCCTCATCTTTAACGGCTTCGCGCATGGTTAGTGATCTGTGGTCAC 178
consensus_5261#1      CAGGTTGAACT---CTATCCTNCTTGACA--TGCCCCTTTAAATAAAGGCC----GTTAG 153
                      * ** * * *    *  ** *  ** **   * * *   *   **  *  *    ** * 

consensus_5261#0      TGGTGAGTCCAGACACCTTTGACGGGTGGCCGGCCATCACAGGTGACACCCACCTCTGAC 238
consensus_5261#1      AGGTGA---TGGTCTCCGTAGATA-----TAAGCTGTCACAGGTGAT--CTACCTGTGAC 203
                       *****     * * ** * **          **  **********   * **** ****

consensus_5261#0      GGGCAAGTTACTAGAAGGCCGTCAGAGGTGTTGGTCTCCGCTAGCCTAGGGCGAGTTGG- 297
consensus_5261#1      GGCCCCAAAAGTAAAGGCCCATCACAGGTAGCNCTCACCNCTNGACGGGCCTTTATTTGC 263
                      ** *     * ** * * ** *** ****     ** ** ** * *  *      ** * 

consensus_5261#0      -GACCCGTCACAGGTGAC-TTATCTCTGACGGCCTTTAAATAAAGGCCGTTAGAGGTGAT 355
consensus_5261#1      TAATCCGTCACAGGTGAGGTTACCTTTGACGGATTTTTGTTTCGACCCGTCACTGATGAG 323
                        * *************  *** ** ******  ***   *     **** *  * *** 

consensus_5261#0      GGTCTCCGTAGGTATAAGCTGTCACAGGTGATCTACCTGTGACGGNCCCAAAAGTAAAGG 415
consensus_5261#1      TTAATTCCAGAAAAAAAAATGCTAAATATTGGTTAGCCTCA--GGATTTGCTAGCCATGC 381
                          * *      * **  **  * *  *    ** *      **       **  * * 

consensus_5261#0      GCCATCACAGGTAGGTCAACTCTGACGGGGCTTTATTTGCTAATCCGTNACAGGTGAGGT 475
consensus_5261#1      CCTCTGAAAAAAAA---------------------------------------------- 395
                       *  * * *   *