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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5262#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1770 fasta sequence
[AGAAGAAGAAGAAAAAAAAGAAACAGCGCCTCCCCACATCGCCGCGCCCGCGCCTCCATCGCCTCCCGCCTCCCGCCTCCCCACCTCGCCGCGCCGGCGCCCCCATCGTCACCGTCGACCGTCCGCCATCGCCGCTCTCCTCTCTCTCGCACTCACCCCGTCACCCGACGCCGCCCTCATCGGCCTTCCCCTACTCGTTCCACTGCCGAAACCCTAGACCCGCACCACCCTCGCCCTCGCGAAATCCTCCTCGCCGCCATCGTTCTCCATCGCCATACCACCGTCGCGCCGCCACGCCTTGCTCCGCTGATGCCGCCAAATCACCGTCGCCCGGCTCGTCGGTCTCCTCCGCACCGTTCCCGATCTCCGCCGACAAAACATCGTCGGACTCCTCGCCGGTTCCTTCTCGCCACCACCGTTCGCCGCCGCCAGACCGCCGTCGCGCTGCCACGATCTGCGGAGCCCAGCCTCCATCGGCTGGGTCGGCGCCAGATCGACAGGAGCCACCGGCAGCTCCACTTGCGCCGTCATCGGGAACCGTGAAACGACCTCCACGGGCTGCGCCTGCGCCAGATTGACGGGAGCCGCCGGCCGCTCCACTTGCGACGTCGTCGGGAGCCGTCGACCGACCTCCTCCATGGGCTACGCAGCCGCCGAATCGATGGGAGCCGCCGGCCGCTCCACCTGCATCGTCGCCGGGAGCTGTCGACCGACCTCCTCCATGGGCTGCGCAGCCGCCGAATCGACAGGAGCCGCCGACCGCTCCACCTGCATCATCACCGGGAGCCGTCGACTGACCTCCGTCGGCTGCTAACTTGCCATATTTGTTCTTCAGATAGCTTAATATGGAGAAGACTCCGCCCTCCGCGCCTCACTATAATGAACTGCTCTATCTGAAATTCTGAGAATGTTATATCTGAAATTCTGAGAAAATGTGACATTGTTAAATTGCTATATAATTTATGATATACTAGAATATAATTAGCACTATCTTCTAGGTGCTTATTTCTAATTGAATACTCAGTGGTAGTTAATAATTGTTGCATTGATAAACAAGTGCATTGGACTTAAGTTTTGCAAGATAGTCTTGAATAAGTAAAGATGCTTACTTGTCTGTGCTGGTGAAATCTTCATGCTAGATGAGCTTGTGTGCTTTTTGGAAAAAAAAAACTGAGTGCAAACGTACAATTTATTGAGATGTAAACTTTGGGTGGTTTGTTGTTAGCACTATTAAGTATTCTATTGTTCCACTGATGGGTGTAGCTGCTACCAAGTTATCTAGCACAGGGGTTTTTAGATGATCAGGTCCATTTTTTCATGCACAGCCGTGGATCTTTCACTAAGGTGGTCCAGTGCTCGATCTGCTTCAGGTTTAGTCCTAATCCCCTGAAGGTCTCAACGTCTGCTTTCAGAACGTTGGCAGCAGCGATCCGCCATGCGTGACCTCACCAATCAGAGACCTCTTGTGCCCATATCCTGTTGTTTCCATTCGACGTCCTCAGTAACTCCTCATCTGAATTTAAGATACAGAAGAGGCTTCTGTTTGGCTGCTAGCCTGCTACCTTGCTTAATTAGAGGATGAGGCTGCAGACAGTTTCTTACAAGAGGTATGCAACGGCGCATCTGTATGCATAGGTTTCTCGGTTAGAACATTCTTTTTTCTTTCACCCAACTCGACCCAATAGGTGTAAATATGTATCCTTCTTTATAACATGTTAGAGGGATTATCTTGTAATCTGTTCGTCGCCTGGATAAGCATATTGATATGGA]
[+] EMBL AK064688 [AGAAGAAGAAGAAAAAAAAGAAACAGCGCCTCCCCACATCGCCGCGCCCGCGCCTCCATCGCCTCCCGCCTCCCGCCTCCCCACCTCGCCGCGCCGGCGCCCCCATCGTCACCGTCGACCGTCCGCCATCGCCGCTCTCCTCTCTCTCGCACTCACCCCGTCACCCGACGCCGCCCTCATCGGCCTTCCCCTACTCGTTCCACTGCCGAAACCCTAGACCCGCACCACCCTCGCCCTCGCGAAATCCTCCTCGCCGCCATCGTTCTCCATCGCCATACCACCGTCGCGCCGCCACGCCTTGCTCCGCTGATGCCGCCAAATCACCGTCGCCCGGCTCGTCGGTCTCCTCCGCACCGTTCCCGATCTCCGCCGACAAAACATCGTCGGACTCCTCGCCGGTTCCTTCTCGCCACCACCGTTCGCCGCCGCCAGACCGCCGTCGCGCTGCCACGATCTGCGGAGCCCAGCCTCCATCGGCTGGGTCGGCGCCAGATCGACAGGAGCCACCGGCAGCTCCACTTGCGCCGTCATCGGGAACCGTGAAACGACCTCCACGGGCTGCGCCTGCGCCAGATTGACGGGAGCCGCCGGCCGCTCCACTTGCGACGTCGTCGGGAGCCGTCGACCGACCTCCTCCATGGGCTACGCAGCCGCCGAATCGATGGGAGCCGCCGGCCGCTCCACCTGCATCGTCGCCGGGAGCTGTCGACCGACCTCCTCCATGGGCTGCGCAGCCGCCGAATCGACAGGAGCCGCCGACCGCTCCACCTGCATCATCACCGGGAGCCGTCGACTGACCTCCGTCGGCTGCTAACTTGCCATATTTGTTCTTCAGATAGCTTAATATGGAGAAGACTCCGCCCTCCGCGCCTCACTATAATGAACTGCTCTATCTGAAATTCTGAGAATGTTATATCTGAAATTCTGAGAAAATGTGACATTGTTAAATTGCTATATAATTTATGATATACTAGAATATAATTAGCACTATCTTCTAGGTGCTTATTTCTAATTGAATACTCAGTGGTAGTTAATAATTGTTGCATTGATAAACAAGTGCATTGGACTTAAGTTTTGCAAGATAGTCTTGAATAAGTAAAGATGCTTACTTGTCTGTGCTGGTGAAATCTTCATGCTAGATGAGCTTGTGTGCTTTTTGGAAAAAAAAAACTGAGTGCAAACGTACAATTTATTGAGATGTAAACTTTGGGTGGTTTGTTGTTAGCACTATTAAGTATTCTATTGTTCCACTGATGGGTGTAGCTGCTACCAAGTTATCTAGCACAGGGGTTTTTAGATGATCAGGTCCATTTTTTCATGCACAGCCGTGGATCTTTCACTAAGGTGGTCCAGTGCTCGATCTGCTTCAGGTTTAGTCCTAATCCCCTGAAGGTCTCAACGTCTGCTTTCAGAACGTTGGCAGCAGCGATCCGCCATGCGTGACCTCACCAATCAGAGACCTCTTGTGCCCATATCCTGTTGTTTCCATTCGACGTCCTCAGTAACTCCTCATCTGAATTTAAGATACAGAAGAGGCTTCTGTTTGGCTGCTAGCCTGCTACCTTGCTTAATTAGAGGATGAGGCTGCAGACAGTTTCTTACAAGAGGTATGCAACGGCGCATCTGTATGCATAGGTTTCTCGGTTAGAACATTCTTTTTTCTTTCACCCAACTCGACCCAATAGGTGTAAATATGTATCCTTCTTTATAACATGTTAGAGGGATTATCTTGTAATCTGTTCGTCGCCTGGATAAGCATATTGATATGGA]
consensusID : consensus_5262#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 780 fasta sequence
[TAAGGTTTAGTCCTAATCCCCTGAAGGTCTCAACGTCTGCTTTCAGAACGTTGGCAGCAGCGATCCGCCATGCGTGACCTCACCAATCAGAGACCTCTTGTGCCCATATCCTGTTGTTTCCATTCGACGTCCTCAGTAACTCCTCATCTGAATTTAAGAGACACAGTTGGAGGCTTGAAGCTGCTAGAAAACCAGCGTACATCCTTGAGCTGCCTAACAAGTGAGAGTCTTCCTAGCTCAACAAATAGGCTCATGCTTTTCATCGGAGTGCATACAACCACCCACCATATTTTTTAATCTTGCTCTGTAGGACAGGGCTAATCCTGGAGGTAATAAGGTTACGGATGGCGCCCACGTTTGCTGCCTCTGTGCCAAAACGAAAAGATCTAAACAATGTGTGTGCTACTCATCACGTGGCTTATCATTCAATATACACTTTCAGATACAGAAGAGGTTTCTGTTTGGCTGCTAGCCTGCTACCTTGCTTAATTAGAGGATGAGGCTGCAGACAGTTTCTTACAAGAGGTATGCAACGGCGCATCTGTATGCATAGGTTTCTCGGTTAGAACATTCTTTTTTCTTTCACCCAACTCGACCCAATAGGTGTAAATATGTATCCCTCTTTATAACATGTTAGAGGGATTATCTTGTAATCTGTTCGTCGCCTGGATAAGCATATTGATATGGAGGCACGCCCGAACTCGACCTACCCAGCCCCCAACCTCATATTGATAAGCATATTTNCTGCACCTCATGTCTCGGTCTATCAATGCAAAAATA]
[+] EMBL CA767322 [TAAGGTTTAGTCCTAATCCCCTGAAGGTCTCAACGTCTGCTTTCAGAACGTTGGCAGCAGCGATCCGCCATGCGTGACCTCACCAATCAGAGACCTCTTGTGCCCATATCCTGTTGTTTCCATTCGACGTCCTCAGTAACTCCTCATCTGAATTTAAGAGACACAGTTGGAGGCTTGAAGCTGCTAGAAAACCAGCGTACATCCTTGAGCTGCCTAACAAGTGAGAGTCTTCCTAGCTCAACAAATAGGCTCATGCTTTTCATCGGAGTGCATACAACCACCCACCATATTTTTTAATCTTGCTCTGTAGGACAGGGCTAATCCTGGAGGTAATAAGGTTACGGATGGCGCCCACGTTTGCTGCCTCTGTGCCAAAACGAAAAGATCTAAACAATGTGTGTGCTACTCATCACGTGGCTTATCATTCAATATACACTTTCAGATACAGAAGAGGTTTCTGTTTGGCTGCTAGCCTGCTACCTTGCTTAATTAGAGGATGAGGCTGCAGACAGTTTCTTACAAGAGGTATGCAACGGCGCATCTGTATGCATAGGTTTCTCGGTTAGAACATTCTTTTTTCTTTCACCCAACTCGACCCAATAGGTGTAAATATGTATCCCTCTTTATAACATGTTAGAGGGATTATCTTGTAATCTGTTCGTCGCCTGGATAAGCATATTGATATGGAGGCACGCCCGAACTCGACCTACCCAGCCCCCAACCTCATATTGATAAGCATATTTNCTGCACCTCATGTCTCGGTCTATCAATGCAAAAATA]
[+] EMBL CF197051 [ gtgaTAATAAGGTTACGGATGGCGCCCACGTTTGCTGCCTCTGTGCCAAAACGAAAAGATCTAAACAATGTGTGTGCTACTCATCACGTGGCTTATCATTCAATATACACTTTCAGATACAGAAGAGGTTTCTGTTTGGCTGCTAGCCTGCTACCTTGCTTAATTAGAGGATGAGGCTGCAGACAGTTTCTTACAAGAGGTATGCAACGGCGCATCTGTATGCATAGGTTTCTCGGTTAGAACATTCTTTTTTCTTTCACCCAACTCGACCCAATAGGTGTAAATATGTATCCTTCTTTATAACATGTTAGAGGGATTATCTTGTAATCTGTTCGTCGCCTGGATAAGCATATTGATATGGAGGCACGCCCGAACTCGACCTACCCAGCCCCCAACCTCATATTGATAAGCATATTTCCTGCACCTCATGTCTCGTTCTATC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5262#0 AGAAGAAGAAGAAAAAAAAGAAACAGCGCCTCCCCACATCGCCGCGCCCGCGCCTCCATC 60
consensus_5262#1 ------------------------------------------------------------
consensus_5262#0 GCCTCCCGCCTCCCGCCTCCCCACCTCGCCGCGCCGGCGCCCCCATCGTCACCGTCGACC 120
consensus_5262#1 ------------------------------------------------------------
consensus_5262#0 GTCCGCCATCGCCGCTCTCCTCTCTCTCGCACTCACCCCGTCACCCGACGCCGCCCTCAT 180
consensus_5262#1 ------------------------------------------------------------
consensus_5262#0 CGGCCTTCCCCTACTCGTTCCACTGCCGAAACCCTAGACCCGCACCACCCTCGCCCTCGC 240
consensus_5262#1 ------------------------------------------------------------
consensus_5262#0 GAAATCCTCCTCGCCGCCATCGTTCTCCATCGCCATACCACCGTCGCGCCGCCACGCCTT 300
consensus_5262#1 ------------------------------------------------------------
consensus_5262#0 GCTCCGCTGATGCCGCCAAATCACCGTCGCCCGGCTCGTCGGTCTCCTCCGCACCGTTCC 360
consensus_5262#1 ------------------------------------------------------------
consensus_5262#0 CGATCTCCGCCGACAAAACATCGTCGGACTCCTCGCCGGTTCCTTCTCGCCACCACCGTT 420
consensus_5262#1 ------------------------------------------------------------
consensus_5262#0 CGCCGCCGCCAGACCGCCGTCGCGCTGCCACGATCTGCGGAGCCCAGCCTCCATCGGCTG 480
consensus_5262#1 ------------------------------------------------------------
consensus_5262#0 GGTCGGCGCCAGATCGACAGGAGCCACCGGCAGCTCCACTTGCGCCGTCATCGGGAACCG 540
consensus_5262#1 ------------------------------------------------------------
consensus_5262#0 TGAAACGACCTCCACGGGCTGCGCCTGCGCCAGATTGACGGGAGCCGCCGGCCGCTCCAC 600
consensus_5262#1 ------------------------------------------------------------
consensus_5262#0 TTGCGACGTCGTCGGGAGCCGTCGACCGACCTCCTCCATGGGCTACGCAGCCGCCGAATC 660
consensus_5262#1 ------------------------------------------------------------
consensus_5262#0 GATGGGAGCCGCCGGCCGCTCCACCTGCATCGTCGCCGGGAGCTGTCGACCGACCTCCTC 720
consensus_5262#1 ------------------------------------------------------------
consensus_5262#0 CATGGGCTGCGCAGCCGCCGAATCGACAGGAGCCGCCGACCGCTCCACCTGCATCATCAC 780
consensus_5262#1 ------------------------------------------------------------
consensus_5262#0 CGGGAGCCGTCGACTGACCTCCGTCGGCTGCTAACTTGCCATATTTGTTCTTCAGATAGC 840
consensus_5262#1 ------------------------------------------------------------
consensus_5262#0 TTAATATGGAGAAGACTCCGCCCTCCGCGCCTCACTATAATGAACTGCTCTATCTGAAAT 900
consensus_5262#1 ------------------------------------------------------------
consensus_5262#0 TCTGAGAATGTTATATCTGAAATTCTGAGAAAATGTGACATTGTTAAATTGCTATATAAT 960
consensus_5262#1 ------------------------------------------------------------
consensus_5262#0 TTATGATATACTAGAATATAATTAGCACTATCTTCTAGGTGCTTATTTCTAATTGAATAC 1020
consensus_5262#1 ------------------------------------------------------------
consensus_5262#0 TCAGTGGTAGTTAATAATTGTTGCATTGATAAACAAGTGCATTGGACTTAAGTTTTGCAA 1080
consensus_5262#1 -------------------------------------------------------TAAGG 5
*
consensus_5262#0 GATAGTCTTGAATAAGTAAAGATGCTTACTTGTCTGTGCTGGTGAAATCTTCATGCTAGA 1140
consensus_5262#1 TTTAGTCCTAATCCCCTGAAGGTCTCAAC--GTCTGCTTTCAGAACGTTGGCAGCAGCGA 63
***** * * * *** * ** ***** * * * ** **
consensus_5262#0 TGAGCT-TGTGTGCTTTTTGGAAAAAAAAAACTGA-GTGCAAACGTACAATTTATTGAGA 1198
consensus_5262#1 TCCGCCATGCGTGACCTCACCAATCAGAGACCTCTTGTGCCCATATCCTGTTGTTTCCAT 123
* ** ** *** * ** * * * ** **** * * * ** **
consensus_5262#0 TGTAAACTTTGGGTGGTTTGTTGTTAGCACTATTAAGTATTCTATTGTTCCACTGATGGG 1258
consensus_5262#1 TCGACGTCCTCAGTAACTCCTCATCTGAATT-TAAGAGACACAGTTG-------GAGGCT 175
* * * ** * * * * * * * * * * *** ** *
consensus_5262#0 TGTAGCTGCTACCAAGTTATCTAGCACA---GGGGTTTTTAGATGATCAGGTCCATTTT- 1314
consensus_5262#1 TGAAGCTGCTAGAAAACCAGCGTACATCCTTGAGCTGCCTAACAAGTGAGAGTCTTCCTA 235
** ******** ** * * ** * * * ** * ** * * *
consensus_5262#0 --TTCATGCACAGCCGTGGATCTTTCACTAAGGTG-GTCCAGTGCTCGATCTGCTTCAGG 1371
consensus_5262#1 GCTCAACAAATAGGCTCATGCTTTTCATCGGAGTGCATACAACCACCCACCATATTT--- 292
* * * ** * ***** *** * ** * * * **
consensus_5262#0 TTTAGTCCTAATCCCCTGAAGGTCTCAACGTCTGCTTTCAGAACGTTGGCAGCAGCGATC 1431
consensus_5262#1 TTTAATCTTG---CTCTGTAGGACAGGGCTAATCCTGGAGGTAATAAGGTTACGGATGGC 349
**** ** * * *** *** * * * ** * * ** * * *
consensus_5262#0 CGCCATGCGTGACCTCACCAATCAGAGACCTCTTGTGCCCATATCCTGTTGTTTCCATTC 1491
consensus_5262#1 GCCCACGTTTGCTGCCTCTGTGCCAAAACGAAAAG-ATCTAAACAATGTGTGTGCTACTC 408
*** * ** * * * * ** * * * * *** * * * **
consensus_5262#0 G--ACGTCCTCAGTAACTCCTCATCTGAATTTAAGATACAGAAGAGGCTTCTGTTTGGCT 1549
consensus_5262#1 ATCACGTGGCTTATCATTCAATATAC-ACTTTCAGATACAGAAGAGGTTTCTGTTTGGCT 467
**** * * ** ** * *** ************** ************
consensus_5262#0 GCTAGCCTGCTACCTTGCTTAATTAGAGGATGAGGCTGCAGACAGTTTCTTACAAGAGGT 1609
consensus_5262#1 GCTAGCCTGCTACCTTGCTTAATTAGAGGATGAGGCTGCAGACAGTTTCTTACAAGAGGT 527
************************************************************
consensus_5262#0 ATGCAACGGCGCATCTGTATGCATAGGTTTCTCGGTTAGAACATTCTTTTTTCTTTCACC 1669
consensus_5262#1 ATGCAACGGCGCATCTGTATGCATAGGTTTCTCGGTTAGAACATTCTTTTTTCTTTCACC 587
************************************************************
consensus_5262#0 CAACTCGACCCAATAGGTGTAAATATGTATCCTTCTTTATAACATGTTAGAGGGATTATC 1729
consensus_5262#1 CAACTCGACCCAATAGGTGTAAATATGTATCCCTCTTTATAACATGTTAGAGGGATTATC 647
******************************** ***************************
consensus_5262#0 TTGTAATCTGTTCGTCGCCTGGATAAGCATATTGATATGGA------------------- 1770
consensus_5262#1 TTGTAATCTGTTCGTCGCCTGGATAAGCATATTGATATGGAGGCACGCCCGAACTCGACC 707
*****************************************
consensus_5262#0 ------------------------------------------------------------
consensus_5262#1 TACCCAGCCCCCAACCTCATATTGATAAGCATATTTNCTGCACCTCATGTCTCGGTCTAT 767
consensus_5262#0 -------------
consensus_5262#1 CAATGCAAAAATA 780
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||