These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [TGGTTCTGGTCCTCGACGTCCTCCTCAGCATCGGGTTCGCTGGTGCCGCGAGGGTGTCCATGGACACGAACTCGGACTCCAAAGAATGGCGACGCCGCATCTTAAGTAGCGCTGCTTCGCGGGACGAACGGCGCTGTGGCGCTCCGGATCGTTCGCCGGAACCCGACACGTATACCGAGAGAGAGATGCTCACTCCGAAAACACTTGAAAATACGGAAACGGTGACGGCGCTCGGGCACGCGATCGTGACGGTATCGAGACAAACAGGCATACGAGACCGGTTCAGGGTATGAATAGGGATGAGCTATAGGTCGAGCGATGACTGTGAATCACGGCTATCGCCCCTGTTGCTCTCGAGAACGGAGGTAAGGACACCGCCAGCGATGACGAGGATGAAGCTTGAGTGGCGGTCGCTACTTCCACCGTGTGCACCGGGTACGCTACTGCCACGGATTTAACAGGGTACCGATGAGAACGGTCCACGATAGCGATCTGCGTCTCCATCCTACGTGGAGACTAGGAGGTGGCTATCCAACCATTCGACGAATCTCCATCGGACTGGAGGAACTGAGGAAGGCGACCACTA] [+] EMBL CA755361 [TGGTTCTGGTCCTCGACGTCCTCCTCAGCATCGGGTTCGCTGGTGCCGCGAGGGTGTCCATGGACACGAACTCGGACTCCAAAGAATGGCGACGCCGCATCTTAAGTAGCGCTGCTTCGCGGGACGAACGGCGCTGTGGCGCTCCGGATCGTTCGCCGGAACCCGACACGTATACCGAGAGAGAGATGCTCACTCCGAAAACACTTGAAAATACGGAAACGGTGACGGCGCTCGGGCACGCGATCGTGACGGTATCGAGACAAACAGGCATACGAGACCGGTTCAGGGTATGAATAGGGATGAGCTATAGGTCGAGCGATGACTGTGAATCACGGCTATCGCCCCTGTTGCTCTCGAGAACGGAGGTAAGGACACCGCCAGCGATGACGAGGATGAAGCTTGAGTGGCGGTCGCTACTTCCACCGTGTGCACCGGGTACGCTACTGCCACGGATTTAACAGGGTACCGATGAGAACGGTCCACGATAGCGATCTGCGTCTCCATCCTACGTGGAGACTAGGAGGTGGCTATCCAACCATTCGACGAATCTCCATCGGACTGGAGGAACTGAGGAAGGCGACCACTA] consensusID : consensus_5263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 568 fasta sequence [ACCAAGCTCGTGGCTCTGGGCCTCGCCGTCCTCCTCAGCATCGGGTTCGCTGGTGCCGCGAGGGTGGCCAGGTACACGAACTCGTACTCCGGCGGCGGGGG-AGGCGGCGGCGGAGGAGGCGGCGGCGGCGGGACGAACGGCGGGTGGGGCTCCGGCTCGGGCGCCGGCGCCGGCGCCGGATACGGCGAGAGCGGNGGCGACTCCGGCAACACGTGGAACTACGGGAGGCGTGGCGGCGCTGGCGGAGGAGGCGGCGTCGTCGTCGCGACCTACGGCGGGTACGGTTCCGGGTCCGGCTCCGGATACCGCATGGTCAGAGGGCTCCAGCGCCGGCTCCGGCTCGTCTGTGCCGATCCCGCGTGCTCTCAACAGCGGCGGTTATTACACCACCGGCGCTTGCCCAGGTGGACCACGGCGCCGATTGCCGCCGCTTCACTCACGCGCTCACCGCACCACCGCCGCTGGCCGCTCCAGTTGGACTCAACTTACCGCCGACAGCGTCATCAGCTATATCCATCGGCACCCGGCTCCGTCCAGTGATCTCGCGCCTACACGCGCGCCACCTCGA] [+] EMBL AU173296 [ACCAAGCTCGTGGCTCTGGGCCTCGCCGTCCTCCTCAGCATCGGGTTCGCTGGTGCCGCGAGGGTGGCCAGGTACACGAACTCGTACTCCGGCGGCGGGGG AGGCGGCGGCGGAGGAGGCGGCGGCGGCGGGACGAACGGCGGGTGGGGCTCCGGCTCGGGCGCCGGCGCCGGCGCCGGATACGGCGAGAGCGGNGGCGACTCCGGCAACACGTGGAACTACGG ] [+] EMBL CA755187 [ TGGCTCTGGGCCTCGCCGTCCTCCTCAGCATCGGGTTCGCTGGTGCCGCGAGGGTGGCCAGGTACACGAACTCGTACTCCGGCGGCGGGGGCAGGCGGCGGCGGAGGAGGCGGCGGCGGCGGGACGAACGGCGGGTGGGGCTCCGGCTCGGGCGCCGGCGCCGAGGCCGGATACGGTGAGAGCGGCGGCGACTCCGGCAACACGTGGAACTACGGGAGGCGTGGCGGCGCTGGCGGAGGAGGCGGCGTCGTCGTCGCGACCTACGGCGGGTACGGTTCCGGGTCCGGCTCCGGATACCGCATGGTCAGAGGGCTCCAGCGCCGGCTCCGGCTCGTCTGTGCCGATCCCGCGTGCTCTCAACAGCGGCGGTTATTACACCACCGGCGCTTGCCCAGGTGGACCACGGCGCCGATTGCCGCCGCTTCACTCACGCGCTCACCGCACCACCGCCGCTGGCCGCTCCAGTTGGACTCAACTTACCGCCGACAGCGTCATCAGCTATATCCATCGGCACCCGGCTCCGTCCAGTGATCTCGCGCCTACACGCGCGCCACCTCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5263#0 ----------TGGTTCTGGTCCTCGACGTCCTCCTCAGCATCGGGTTCGCTGGTGCCGCG 50 consensus_5263#1 ACCAAGCTCGTGGCTCTGGGCCTCGCCGTCCTCCTCAGCATCGGGTTCGCTGGTGCCGCG 60 *** ***** ***** ********************************** consensus_5263#0 AGGGTGTCCATGGACACGAACTCGGACTCCAAAGAATGGCGACGCCGCATCTTAAGTAGC 110 consensus_5263#1 AGGGTGGCCAGGTACACGAACTCGTACTCCGGCGGCGGGGGAGGCGGCGGCGGAGGAGGC 120 ****** *** * *********** ***** * ** ** ** ** * * * ** consensus_5263#0 GCTGCTTCGCGGGACGAACGGCGCTGTGGCGCTCCGGATCGTTCGCCGGAACCCGACACG 170 consensus_5263#1 GGCGGCG-GCGGGACGAACGGCGG-GTGGGGCTCCGGCTCGGGCGCCGGCGCCGGCGCCG 178 * * *************** **** ******* *** ****** ** * ** consensus_5263#0 TATACCGAGAGAGAGATGCTCACTCCGAAAACACTTGAAAATACGGAAACGGTGACGGCG 230 consensus_5263#1 GATACGGCGAGAGCGGNGGCGACTCCGGCAACACGTGGAACTACGGGAGGCGTGGCGGCG 238 **** * ***** * * ****** ***** ** ** ***** * *** ***** consensus_5263#0 CTCGGGCACGCGATCGTGACGGTATCGAGACAAACAG-GCATACGAGACCGGTTCAGGGT 289 consensus_5263#1 CTGGCGGAGGAGGCGGCGTCGTCGTCGCGACCTACGGCGGGTACGGTTCCGGGTCCGGCT 298 ** * * * * * * * ** *** *** ** * * **** **** ** ** * consensus_5263#0 ATGAATAGGGATGAGCTATAGG--TCGAGCGATGACTGTGAATCACGGCTATCGCCCCTG 347 consensus_5263#1 CCGGATACCGCATGGTCAGAGGGCTCCAGCGCCGGCTCCGGCTCGTCTGTGCCGATCCCG 358 * *** * * * *** ** **** * ** * ** * ** ** * consensus_5263#0 T-TGCTCTCGAGAACGGAGGTAAGGACACCGCCAGCGATGACGAGGATGAAGCTTGAGTG 406 consensus_5263#1 CGTGCTCTCAACAGCGGCGGTTATTACACCACCGGCGCTTGCCCAGGTGGACCACG-GCG 417 ******* * * *** *** * ***** ** *** * * * ** * * * * * consensus_5263#0 GCGGTCGCTACTTCCAC-CGTGTGCACCGGGTACGCTACTGCCACGGATTTAACAGGGTA 465 consensus_5263#1 CCGATTGCCGCCGCTTCACTCACGCGCTCACCGCACCACCGCCGCTGGCCGCTCCAGTTG 477 ** * ** * * * * ** * * * ** *** * * * * * consensus_5263#0 CCGATGAGAACGGTCCACGATAGCGATCTGCGTCTCCATCCTACGTGGAGACTAGGAGGT 525 consensus_5263#1 --GACTCAACTTACCGCCGACAGCG-TCATCAGCTATATCC---ATCGGCACCCGGCTCC 531 ** * * *** **** ** * ** **** * * ** ** consensus_5263#0 GGCTATCCAACCATTCGACGAATCTCCATCGGACTGGAGGAACTGAGGAAGGCGACCACT 585 consensus_5263#1 GTCCAGT-GATCTCGCGCCTACACGCGCGCCACCTCGA---------------------- 568 * * * * * ** * * * * * ** ** consensus_5263#0 A 586 consensus_5263#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||