These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5268#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1296 fasta sequence [TACTACACACTACACACTACACACTACTCCAACTCTCCAAGAGTCATGCTCCAGCCATGTCAACCACCGCGAAATTAGCAGGATTGCTTCGCGATGAGCAAGGTCCCGTCGCGTTCAACGACGCCGTCGACGAGGATGCCGTCCCGGTGGAACCACTCACGGAGCACGACGACGCCATCTCCGCCATGTCGGCGGCCCACTGCAACAACATGCAGTTCCGCTGCTACCGAGGATTCTGGATATCGGAGATGTGGGCGCCGGGTGTGGTCGCCGTGCACCGCAGTTTCGCACCTCGCGCCGACGACGTCCTCGTTGCGAGCCTGCAGAAGTCTGGTACCACGTGGCTCAAGGCCCTGACTTTCGCCACCATGGCGCGCGGCGCGTGGCCGCCGTCCAGCCACGACCACCCGCTCCGCCGCCTCAACCCGCATCTGTGTGTGCCTTCTCTGGAGGTCCTGTACACCCTAGGGCGCGACGCTCTGCTGGACATGCTGCCGTCGCCGAGGCTCTTGTCCACCCACATGCCGCTCTCGCTGTTGCCTCCTTCGACCTGCAAGATCGTCTATATTTACAGGGACCAAAAAGACACAGCAGTTTCTCTATGGCACTTCATGAAGCGTAGACATCCTGACTTGACATTCTCTGAGGTACATGAGGCCTTCTGCAATGGCATCTGCATGGGTGGACCTGCGTGGGATAATATTCTTGAGTTCTGGTACGCAAGCAATGCAGAGCCAACAAGGGTACTCTTCCTGACCTATGAGAAGGTTCTTCAAGACCCATGTGACGCAGTTAAGAAGCTAGCTCAGTTCCTTGGTCAACCGTTCTCGGGTGCTGAAGAAGAAGCTGGTGTTGTCACAGAGATTGCAGACCTCTGCAGCATTGACAATTTGAGGAACCAAAAAGCTAACAAGTATGGCTCCATTGGCGGGAAGATCTCGCATGAATCCTTCTTTAGGAAGGGGATGGCAGGGGACTGGACGAACCACATGACTCTTGAGATGGCAGAGCGTTTGGATTCTATCCTCCGGGAGAAGCTCGATGGGTCAGGGCTAATTGTGTGACGTTATTCCTTTTATTTATTTTGATTTGTCTTGGTATGATGATAAATCTGTTTCCATGCCAAAAATAAATCGGTATTCCACAAAGTCCTGATCTTTACCAGCTTTCTAGTTTCTTTTCTCCATACATGGTTTTTAAGGTCATTCGGGTTGTGTGTGACGGTAGATGCTGGATTTGTAATACACTTTTATGTAAAATCAAAGGTGTTTTTAATTATTATTCTGTGATGAACAA] [+] EMBL AK058698 [TACTACACACTACACACTACACACTACTCCAACTCTCCAAGAGTCATGCTCCAGCCATGTCAACCACCGCGAAATTAGCAGGATTGCTTCGCGATGAGCAAGGTCCCGTCGCGTTCAACGACGCCGTCGACGAGGATGCCGTCCCGGTGGAACCACTCACGGAGCACGACGACGCCATCTCCGCCATGTCGGCGGCCCACTGCAACAACATGCAGTTCCGCTGCTACCGAGGATTCTGGATATCGGAGATGTGGGCGCCGGGTGTGGTCGCCGTGCACCGCAGTTTCGCACCTCGCGCCGACGACGTCCTCGTTGCGAGCCTGCAGAAGTCTGGTACCACGTGGCTCAAGGCCCTGACTTTCGCCACCATGGCGCGCGGCGCGTGGCCGCCGTCCAGCCACGACCACCCGCTCCGCCGCCTCAACCCGCATCTGTGTGTGCCTTCTCTGGAGGTCCTGTACACCCTAGGGCGCGACGCTCTGCTGGACATGCTGCCGTCGCCGAGGCTCTTGTCCACCCACATGCCGCTCTCGCTGTTGCCTCCTTCGACCTGCAAGATCGTCTATATTTACAGGGACCAAAAAGACACAGCAGTTTCTCTATGGCACTTCATGAAGCGTAGACATCCTGACTTGACATTCTCTGAGGTACATGAGGCCTTCTGCAATGGCATCTGCATGGGTGGACCTGCGTGGGATAATATTCTTGAGTTCTGGTACGCAAGCAATGCAGAGCCAACAAGGGTACTCTTCCTGACCTATGAGAAGGTTCTTCAAGACCCATGTGACGCAGTTAAGAAGCTAGCTCAGTTCCTTGGTCAACCGTTCTCGGGTGCTGAAGAAGAAGCTGGTGTTGTCACAGAGATTGCAGACCTCTGCAGCATTGACAATTTGAGGAACCAAAAAGCTAACAAGTATGGCTCCATTGGCGGGAAGATCTCGCATGAATCCTTCTTTAGGAAGGGGATGGCAGGGGACTGGACGAACCACATGACTCTTGAGATGGCAGAGCGTTTGGATTCTATCCTCCGGGAGAAGCTCGATGGGTCAGGGCTAATTGTGTGACGTTATTCCTTTTATTTATTTTGATTTGTCTTGGTATGATGATAAATCTGTTTCCATGCCAAAAATAAATCGGTATTCCACAAAGTCCTGATCTTTACCAGCTTTCTAGTTTCTTTTCTCCATACATGGTTTTTAAGGTCATTCGGGTTGTGTGTGACGGTAGATGCTGGATTTGTAATACACTTTTATGTAAAATCAAAGGTGTTTTTAATTATTATTCTGTGATGAACAA] [+] EMBL OSS1919A [ AGTTCCTTGGTCAACCGTTCTCGGGTGCTGAAGAAGAAGCTGGTGTTGTCACAGAGATTGCAGACCTCTGCAGCATTGACAATTTGAGGAACCAAAAAGCTAACAAGTATGGCTCCATTGGCGGGAAGATCTCGCATGAATCCTTCTTTAGGAAGGGGATGGCAGGGGACTGGACGAACCACATGACTCTTGAGATGGCAGAGCGTTTGGATTCTATCCTCCGGGAGAAGCTCGATGGGTCAGGGCTAATTGTGTGACGTTATTCCTTTTATTTATTTTGATTTGTCTTGGTATGATGATAAATCTGTTTCCATGCCAAAAATAAATCGGTATTNCACAAAGTCCTGATCTTTACCAGCTTTCTAG TTCTTTTCTCCATACAT ] consensusID : consensus_5268#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 699 fasta sequence [TCTATTATATTGTGCTGCTAATTTATAGGGACCAAAAGACACAGCAGTTTCTCTATGGCACTTCATGAAGCGTAGACATCCTGACTTGACATTCTCTGAGGTACATGAGGCCTTCTGCAATGGCATCTGCATGGGTGGACCTGCGTGGGATAATATTCTTGAGTTCTGGTACGCAAGCAATGCAGAGCCAACAAGGGTACTCTTCCTGACCTATGAGAAGGTTCTTCAAGACCCATGCGACGCAGTTAAGAAGCTAGCTCAGTTCCTTGGTCAACCGTTCTCGGGTGCTGAAGAAGAAGCTGGTGTTGTCACAGAGATTGCAGACCTCTGCAGCATTGACAATTTGAGGAACCAAAAAGCTAACAAGTATGGCTCCATTGGCGGGAAGATCTCGCATGAATCCTTCTTTAGGAAGGGGATGGCAGGGGACTGGACGAACCACATGACTCTTGAGATGGCAGAGCGTTTGGATTCTATCCTCCGGGAGAAGCTCGATGGGTCAGGGCTAATTGTGTGACGTTATTCCTTTTACTTATTTTGATTTGTCTTGGTATGATGATAAATCTGNTTCCATGCCAAAAATAAATCGGTATTCCACAAAGTCCTGATCTTTACCAGCTTTCTAGNTTCTTTTCTNCATACATGGTTTTTAAGGTCATTTCGGGTTGTGTGTGACGGTAGATGCTGGATTTGTAATAC] [+] EMBL CA767360 [TCTATTATATTGTGCTGCTAATTTATAGGGACCAAAAGACACAGCAGTTTCTCTATGGCACTTCATGAAGCGTAGACATCCTGACTTGACATTCTCTGAGGTACATGAGGCCTTCTGCAATGGCATCTGCATGGGTGGACCTGCGTGGGATAATATTCTTGAGTTCTGGTACGCAAGCAATGCAGAGCCAACAAGGGTACTCTTCCTGACCTATGAGAAGGTTCTTCAAGACCCATGCGACGCAGTTAAGAAGCTAGCTCAGTTCCTTGGTCAACCGTTCTCGGGTGCTGAAGAAGAAGCTGGTGTTGTCACAGAGATTGCAGACCTCTGCAGCATTGACAATTTGAGGAACCAAAAAGCTAACAAGTATGGCTCCATTGGCGGGAAGATCTCGCATGAATCCTTCTTTAGGAAGGGGATGGCAGGGGACTGGACGAACCACATGACTCTTGAGATGGCAGAGCGTTTGGATTCTATCCTCCGGGAGAAGCTCGATGGGTCAGGGCTAATTGTGTGACGTTATTCCTTTTACTTATTTTGATTTGTCTTGGTATGATGATAAATCTGNTTCCATGCCAAAAATAAATCGGTATTCCACAAAGTCCTGATCTTTACCAGCTTTCTAGNTTCTTTTCTNCATACATGGTTTTTAAGGTCATTTCGGGTTGTGTGTGACGGTAGATGCTGGATTTGTAATAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5268#0 TACTACACACTACACACTACACACTACTCCAACTCTCCAAGAGTCATGCTCCAGCCATGT 60 consensus_5268#1 ------------------------------------------------------------ consensus_5268#0 CAACCACCGCGAAATTAGCAGGATTGCTTCGCGATGAGCAAGGTCCCGTCGCGTTCAACG 120 consensus_5268#1 ------------------------------------------------------------ consensus_5268#0 ACGCCGTCGACGAGGATGCCGTCCCGGTGGAACCACTCACGGAGCACGACGACGCCATCT 180 consensus_5268#1 ------------------------------------------------------------ consensus_5268#0 CCGCCATGTCGGCGGCCCACTGCAACAACATGCAGTTCCGCTGCTACCGAGGATTCTGGA 240 consensus_5268#1 ------------------------------------------------------------ consensus_5268#0 TATCGGAGATGTGGGCGCCGGGTGTGGTCGCCGTGCACCGCAGTTTCGCACCTCGCGCCG 300 consensus_5268#1 ------------------------------------------------------------ consensus_5268#0 ACGACGTCCTCGTTGCGAGCCTGCAGAAGTCTGGTACCACGTGGCTCAAGGCCCTGACTT 360 consensus_5268#1 ------------------------------------------------------------ consensus_5268#0 TCGCCACCATGGCGCGCGGCGCGTGGCCGCCGTCCAGCCACGACCACCCGCTCCGCCGCC 420 consensus_5268#1 ------------------------------------------------------------ consensus_5268#0 TCAACCCGCATCTGTGTGTGCCTTCTCTGGAGGTCCTGTACACCCTAGGGCGCGACGCTC 480 consensus_5268#1 ------------------------------------------------------------ consensus_5268#0 TGCTGGACATGCTGCCGTCGCCGAGGCTCTTGTCCACCCACATGCCGCTCTCGCTGTTGC 540 consensus_5268#1 ------------------------------------------------------------ consensus_5268#0 CTCCTTCGACCTGCAAGATCGT-CTAT--ATTTACAGGGACCAAAAAGACACAGCAGTTT 597 consensus_5268#1 ---------TCTATTATATTGTGCTGCTAATTTATAGGGACCAAAA-GACACAGCAGTTT 50 ** * ** ** ** ***** *********** ************* consensus_5268#0 CTCTATGGCACTTCATGAAGCGTAGACATCCTGACTTGACATTCTCTGAGGTACATGAGG 657 consensus_5268#1 CTCTATGGCACTTCATGAAGCGTAGACATCCTGACTTGACATTCTCTGAGGTACATGAGG 110 ************************************************************ consensus_5268#0 CCTTCTGCAATGGCATCTGCATGGGTGGACCTGCGTGGGATAATATTCTTGAGTTCTGGT 717 consensus_5268#1 CCTTCTGCAATGGCATCTGCATGGGTGGACCTGCGTGGGATAATATTCTTGAGTTCTGGT 170 ************************************************************ consensus_5268#0 ACGCAAGCAATGCAGAGCCAACAAGGGTACTCTTCCTGACCTATGAGAAGGTTCTTCAAG 777 consensus_5268#1 ACGCAAGCAATGCAGAGCCAACAAGGGTACTCTTCCTGACCTATGAGAAGGTTCTTCAAG 230 ************************************************************ consensus_5268#0 ACCCATGTGACGCAGTTAAGAAGCTAGCTCAGTTCCTTGGTCAACCGTTCTCGGGTGCTG 837 consensus_5268#1 ACCCATGCGACGCAGTTAAGAAGCTAGCTCAGTTCCTTGGTCAACCGTTCTCGGGTGCTG 290 ******* **************************************************** consensus_5268#0 AAGAAGAAGCTGGTGTTGTCACAGAGATTGCAGACCTCTGCAGCATTGACAATTTGAGGA 897 consensus_5268#1 AAGAAGAAGCTGGTGTTGTCACAGAGATTGCAGACCTCTGCAGCATTGACAATTTGAGGA 350 ************************************************************ consensus_5268#0 ACCAAAAAGCTAACAAGTATGGCTCCATTGGCGGGAAGATCTCGCATGAATCCTTCTTTA 957 consensus_5268#1 ACCAAAAAGCTAACAAGTATGGCTCCATTGGCGGGAAGATCTCGCATGAATCCTTCTTTA 410 ************************************************************ consensus_5268#0 GGAAGGGGATGGCAGGGGACTGGACGAACCACATGACTCTTGAGATGGCAGAGCGTTTGG 1017 consensus_5268#1 GGAAGGGGATGGCAGGGGACTGGACGAACCACATGACTCTTGAGATGGCAGAGCGTTTGG 470 ************************************************************ consensus_5268#0 ATTCTATCCTCCGGGAGAAGCTCGATGGGTCAGGGCTAATTGTGTGACGTTATTCCTTTT 1077 consensus_5268#1 ATTCTATCCTCCGGGAGAAGCTCGATGGGTCAGGGCTAATTGTGTGACGTTATTCCTTTT 530 ************************************************************ consensus_5268#0 ATTTATTTTGATTTGTCTTGGTATGATGATAAATCTGTTTCCATGCCAAAAATAAATCGG 1137 consensus_5268#1 ACTTATTTTGATTTGTCTTGGTATGATGATAAATCTGNTTCCATGCCAAAAATAAATCGG 590 * *********************************** ********************** consensus_5268#0 TATTCCACAAAGTCCTGATCTTTACCAGCTTTCTAGTTTCTTTTCTCCATACATGGTTTT 1197 consensus_5268#1 TATTCCACAAAGTCCTGATCTTTACCAGCTTTCTAGNTTCTTTTCTNCATACATGGTTTT 650 ************************************ ********* ************* consensus_5268#0 TAAGGTCATT-CGGGTTGTGTGTGACGGTAGATGCTGGATTTGTAATACACTTTTATGTA 1256 consensus_5268#1 TAAGGTCATTTCGGGTTGTGTGTGACGGTAGATGCTGGATTTGTAATAC----------- 699 ********** ************************************** consensus_5268#0 AAATCAAAGGTGTTTTTAATTATTATTCTGTGATGAACAA 1296 consensus_5268#1 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||