cluster # 5272

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Oryza sativa
cluster # 5272 cluster # 5272 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5272#0 length = 910 sequences # 2

consensus_5272#1 length = 266 sequences # 1

consensusID : consensus_5272#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 910
fasta sequence

                              [ATAGCTGCATTGGCAATTTGGCATTTGCTGACAAGTGTACAAGACCACACAGCTTTTCTACTACATTTTCTTGGGTTTCTTGAATGGCGAATGCGAGTGTTCCTAAGCCGGCGAAGCGCCTGTCGCGCAAGAGGAGCTTCAGGCTCGGCCTGCCGCTGCTCTGCGGGCAGTCCGACGTGGCGAGCCCACGCGGCGGCGGCGGCGCCGCCGCCGCCGCCCGTTCGTCGTCGTCGGGGAGAAGGCAGGGCGAGCTGCACAGGATCTTCCAGCACTTCGACA-GGGACAACGACGGC-AAGATCTCCGGCGCCGAGCTGAGCGCGTTCTTCGCGTCCATGGGCGACGAGATGCCGGCGCCGTCGCCGGGCGGCGGC-GGCGCCGCCGCCGGCTACATGCTCGACTTCGCCGGATTCGTTGCCCTGATGGAGAGAGGTGACAGCCAAGAAGAGGACCTGAGGAGCGCCTTCGAGGTGTTCAACGCCGTCGAGTCCGCCGGCCGGATCACGGCGAGGGGCCTGCAGAGGGTGCTCGCGCAGCTCGGTGACGAGCGGTCGGTCGCCGACTGCGAGGCCATGATCAGGGCCTACGACGTCGACGGCGACGGCGGCCTCGACTTCCATGAGTTCCAGAGGATGATGAGCTAAGTCCATGGAATGCCTCAGCTTGAAGCTGCTACAGCGAGTGAGTGACTCAGCGAGGTGTTTTTCAGTTTCAGAGTCCTGAGAAAATTATACTGCTACTATAGGTTGTTGATAAGTCTGCTGCATCCAGATGACACATTGCAGATTGTTTACAGGGCAGAAGAGTTCTTCAGAGCTCTTTTGCTTGCCTGGAGCAAATTTGTTGTTGTCATCTTGAGTTGTTTGGTGTGCCACACACTTAATCCAGTGTATCAGTAAAGTTACAGTTGATT]

[+] EMBL AK107501             [ATAGCTGCATTGGCAATTTGGCATTTGCTGACAAGTGTACAAGACCACACAGCTTTTCTACTACATTTTCTTGGGTTTCTTGAATGGCGAATGCGAGTGTTCCTAAGCCGGCGAAGCGCCTGTCGCGCAAGAGGAGCTTCAGGCTCGGCCTGCCGCTGCTCTGCGGGCAGTCCGACGTGGCGAGCCCACGCGGCGGCGGCGGCGCCGCCGCCGCCGCCCGTTCGTCGTCGTCGGGGAGAAGGCAGGGCGAGCTGCACAGGATCTTCCAGCACTTCGACA GGGACAACGACGGC AAGATCTCCGGCGCCGAGCTGAGCGCGTTCTTCGCGTCCATGGGCGACGAGATGCCGGCGCCGTCGCCGGGCGGCGGC GGCGCCGCCGCCGGCTACATGCTCGACTTCGCCGGATTCGTTGCCCTGATGGAGAGAGGTGACAGCCAAGAAGAGGACCTGAGGAGCGCCTTCGAGGTGTTCAACGCCGTCGAGTCCGCCGGCCGGATCACGGCGAGGGGCCTGCAGAGGGTGCTCGCGCAGCTCGGTGACGAGCGGTCGGTCGCCGACTGCGAGGCCATGATCAGGGCCTACGACGTCGACGGCGACGGCGGCCTCGACTTCCATGAGTTCCAGAGGATGATGAGCTAAGTCCATGGAATGCCTCAGCTTGAAGCTGCTACAGCGAGTGAGTGACTCAGCGAGGTGTTTTTCAGTTTCAGAGTCCTGAGAAAATTATACTGCTACTATAGGTTGTTGATAAGTCTGCTGCATCCAGATGACACATTGCAGATTGTTTACAGGGCAGAAGAGTTCTTCAGAGCTCTTTTGCTTGCCTGGAGCAAATTTGTTGTTGTCATCTTGAGTTGTTTGGTGTGCCACACACTTAATCCAGTGTATCAGTAAAGTTACAGTTGATT]
[+] EMBL AU091362             [                                                                                                                                                                                                                                                                             CATTTCGACAGGGGCCAACG CGGCAAAGATNTCCGGCGCCGAGCTGAGCGCGTTCTTCGCGTCCATGGGCGACGAGATGCCGGCGCCGTCGCCGGGCGNCGGCGGGCGCCGCCGCCGGCTACATGCTCGACTTCGCCGGATTCGTTGCCCTGATGGAGAGAGGTGACAGCCAAGAAGAGGACCTGAGGAGCGCCTTCGAGGTGTTCAACGCCGTCGAGTCCGCCGGCCGGATCACGGCGAGGGGCCTGCAGAGGGTGCTCGCGCAGCTCGGTGACGAGCGGTCGGTCGCCGACTGCGAGGCCATGATCAGGGCCTACGACGTCGACGGCGACGGCGGCCTCGACTTCCATGAGTTCCAGAGGATGATGAGCTAAGTCCATGGAATGCCTCAGCTTGAAGCTGCTACAGCGAGTGAGTGACTCAGCGAGGTGTTTTTCAGTTTCAGAGTCCTGAGAAAATTATACTGCTACTATAGGTTGTTGATAAGTCTGCTGCATCCAGATGACACATTGCAGATTGTTTACAGGGCAGAAGAGTTCTTCAGAGCTCTTTTGCTTGCCTGGAGCAAATTTGTTGTTGTCATCTTGAGTTGTTTGGTGTGCCACACACTTAATCCAGTGTATCAGTAAAGTTACAGT     ]




>consensus_5272#0
ATAGCTGCATTGGCAATTTGGCATTTGCTGACAAGTGTACAAGACCACACAGCTTTTCTA
CTACATTTTCTTGGGTTTCTTGAATGGCGAATGCGAGTGTTCCTAAGCCGGCGAAGCGCC
TGTCGCGCAAGAGGAGCTTCAGGCTCGGCCTGCCGCTGCTCTGCGGGCAGTCCGACGTGG
CGAGCCCACGCGGCGGCGGCGGCGCCGCCGCCGCCGCCCGTTCGTCGTCGTCGGGGAGAA
GGCAGGGCGAGCTGCACAGGATCTTCCAGCACTTCGACAGGGACAACGACGGCAAGATCT
CCGGCGCCGAGCTGAGCGCGTTCTTCGCGTCCATGGGCGACGAGATGCCGGCGCCGTCGC
CGGGCGGCGGCGGCGCCGCCGCCGGCTACATGCTCGACTTCGCCGGATTCGTTGCCCTGA
TGGAGAGAGGTGACAGCCAAGAAGAGGACCTGAGGAGCGCCTTCGAGGTGTTCAACGCCG
TCGAGTCCGCCGGCCGGATCACGGCGAGGGGCCTGCAGAGGGTGCTCGCGCAGCTCGGTG
ACGAGCGGTCGGTCGCCGACTGCGAGGCCATGATCAGGGCCTACGACGTCGACGGCGACG
GCGGCCTCGACTTCCATGAGTTCCAGAGGATGATGAGCTAAGTCCATGGAATGCCTCAGC
TTGAAGCTGCTACAGCGAGTGAGTGACTCAGCGAGGTGTTTTTCAGTTTCAGAGTCCTGA
GAAAATTATACTGCTACTATAGGTTGTTGATAAGTCTGCTGCATCCAGATGACACATTGC
AGATTGTTTACAGGGCAGAAGAGTTCTTCAGAGCTCTTTTGCTTGCCTGGAGCAAATTTG
TTGTTGTCATCTTGAGTTGTTTGGTGTGCCACACACTTAATCCAGTGTATCAGTAAAGTT
ACAGTTGATT

consensusID : consensus_5272#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 266
fasta sequence

                              [GCATTTGCTGACAAGTGTACAAGACCACACAGCTTTTCTACTACATTTTCTTGGGTTTCTTGAATGGCGAACGCGAGTTTTCCTAAGCCGGCGAACGCCTGTCGCGCAAGAGGAGCTTCAGGCTCGGCCTGCCGCTGCTCTGCGGGCAGTCCGACGTGGCGAGCCCACGCTGCGGCGGCGGCGCNCNCGCCCCGCTATNCGGTAAGTCCGTCGGGGAAAAAGGCAGGGCGAGCTGCNCAGGATCTTCCAGCACTTCGACAGGGACA]

[+] EMBL C74259               [GCATTTGCTGACAAGTGTACAAGACCACACAGCTTTTCTACTACATTTTCTTGGGTTTCTTGAATGGCGAACGCGAGTTTTCCTAAGCCGGCGAACGCCTGTCGCGCAAGAGGAGCTTCAGGCTCGGCCTGCCGCTGCTCTGCGGGCAGTCCGACGTGGCGAGCCCACGCTGCGGCGGCGGCGCNCNCGCCCCGCTATNCGGTAAGTCCGTCGGGGAAAAAGGCAGGGCGAGCTGCNCAGGATCTTCCAGCACTTCGACAGGGACA]




>consensus_5272#1
GCATTTGCTGACAAGTGTACAAGACCACACAGCTTTTCTACTACATTTTCTTGGGTTTCT
TGAATGGCGAACGCGAGTTTTCCTAAGCCGGCGAACGCCTGTCGCGCAAGAGGAGCTTCA
GGCTCGGCCTGCCGCTGCTCTGCGGGCAGTCCGACGTGGCGAGCCCACGCTGCGGCGGCG
GCGCNCNCGCCCCGCTATNCGGTAAGTCCGTCGGGGAAAAAGGCAGGGCGAGCTGCNCAG
GATCTTCCAGCACTTCGACAGGGACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5272#0      ATAGCTGCATTGGCAATTTGGCATTTGCTGACAAGTGTACAAGACCACACAGCTTTTCTA 60
consensus_5272#1      --------------------GCATTTGCTGACAAGTGTACAAGACCACACAGCTTTTCTA 40
                                          ****************************************

consensus_5272#0      CTACATTTTCTTGGGTTTCTTGAATGGCGAATGCGAGTGTTCCTAAGCCGGCGAAGCGCC 120
consensus_5272#1      CTACATTTTCTTGGGTTTCTTGAATGGCGAACGCGAGTTTTCCTAAGCCGGCGAA-CGCC 99
                      ******************************* ****** **************** ****

consensus_5272#0      TGTCGCGCAAGAGGAGCTTCAGGCTCGGCCTGCCGCTGCTCTGCGGGCAGTCCGACGTGG 180
consensus_5272#1      TGTCGCGCAAGAGGAGCTTCAGGCTCGGCCTGCCGCTGCTCTGCGGGCAGTCCGACGTGG 159
                      ************************************************************

consensus_5272#0      CGAGCCCACGCGGCGGCGGCGGCGCCGCCGCCGCCGCCCGTTCGTCG--TCGTCGGGGAG 238
consensus_5272#1      CGAGCCCACGCTGCGGCGGCGGCGCNCNCGCC-CCGCTATNCGGTAAGTCCGTCGGGGAA 218
                      *********** *************   **** ****      **     ********* 

consensus_5272#0      AA-GGCAGGGCGAGCTGCACAGGATCTTCCAGCACTTCGACAGGGACAACGACGGCAAGA 297
consensus_5272#1      AAAGGCAGGGCGAGCTGCNCAGGATCTTCCAGCACTTCGACAGGGACA------------ 266
                      ** *************** *****************************            

consensus_5272#0      TCTCCGGCGCCGAGCTGAGCGCGTTCTTCGCGTCCATGGGCGACGAGATGCCGGCGCCGT 357
consensus_5272#1      ------------------------------------------------------------
                                                                                  

consensus_5272#0      CGCCGGGCGGCGGCGGCGCCGCCGCCGGCTACATGCTCGACTTCGCCGGATTCGTTGCCC 417
consensus_5272#1      ------------------------------------------------------------
                                                                                  

consensus_5272#0      TGATGGAGAGAGGTGACAGCCAAGAAGAGGACCTGAGGAGCGCCTTCGAGGTGTTCAACG 477
consensus_5272#1      ------------------------------------------------------------
                                                                                  

consensus_5272#0      CCGTCGAGTCCGCCGGCCGGATCACGGCGAGGGGCCTGCAGAGGGTGCTCGCGCAGCTCG 537
consensus_5272#1      ------------------------------------------------------------
                                                                                  

consensus_5272#0      GTGACGAGCGGTCGGTCGCCGACTGCGAGGCCATGATCAGGGCCTACGACGTCGACGGCG 597
consensus_5272#1      ------------------------------------------------------------
                                                                                  

consensus_5272#0      ACGGCGGCCTCGACTTCCATGAGTTCCAGAGGATGATGAGCTAAGTCCATGGAATGCCTC 657
consensus_5272#1      ------------------------------------------------------------
                                                                                  

consensus_5272#0      AGCTTGAAGCTGCTACAGCGAGTGAGTGACTCAGCGAGGTGTTTTTCAGTTTCAGAGTCC 717
consensus_5272#1      ------------------------------------------------------------
                                                                                  

consensus_5272#0      TGAGAAAATTATACTGCTACTATAGGTTGTTGATAAGTCTGCTGCATCCAGATGACACAT 777
consensus_5272#1      ------------------------------------------------------------
                                                                                  

consensus_5272#0      TGCAGATTGTTTACAGGGCAGAAGAGTTCTTCAGAGCTCTTTTGCTTGCCTGGAGCAAAT 837
consensus_5272#1      ------------------------------------------------------------
                                                                                  

consensus_5272#0      TTGTTGTTGTCATCTTGAGTTGTTTGGTGTGCCACACACTTAATCCAGTGTATCAGTAAA 897
consensus_5272#1      ------------------------------------------------------------
                                                                                  

consensus_5272#0      GTTACAGTTGATT 910
consensus_5272#1      -------------