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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5275#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1194 fasta sequence
[GCCTCAGCCTCTGTCCGTCTCGCGCGCCGGCTGCCGCTGCACTTGCCCATGGCCATGGCGCCGCCGTCTCCTCCCTGCCTCCTCCGCGCCCTCCTCCCTGTCGCCTCCTCCTCTTCTCGGGGGCTCCGCCGCCGGCCTACTACCTCCTTGCTCCGCTGCTCCTCGCCGTCGGCGGATGCGGCGTCGCCGTCGGGGGAGGGTGGCCGCGAGTACGAGCCCTCCTTCGCCGACGACTTCCTCCTCGCCTTCTTCCGTGCCAAGATGGTGGAGGAGGTTGGATGGGATTCTGAAAAGCCTGGCTACAATGGACTGATTGAAGTTGCCAACCGCCTCATGATCAAGGGGAAGAGTGCGTTGGAGACAGAGCAATCAGCTGTCCGAGTACTCCGATCACTGTTTCCCCCTCTCTTGCTTGTTCTCTTCAAAGCTCTTTTAGCACCAATTGCTAATGGTCAATTGGCTTCCATGATGGTTGCTAGAGCAACAGCACTTTCATGCCAATGGCTGATGGGGCCATGTTTGTTAAATTCCATAACATTATCCAATGGAAAATCATTATCAAGCGGGGTATTTGTTGAGAAGTGCAAATATTTGGAAGAGAGCAAATGCCTTGGTGTTTGTATCAACACATGCAAACTGCCAACTCAGACATTCTTCAAGGATCACATGGGTGTTGATTTGTATATGGAACCAAACTTTGAAGACTATAGCTGCCAGTTCAACTTTGGGGTGTCACCTCCACCTCTTGACACCGACAAAGCCCTAAAGGAGCCCTGCTTGGACATATGCACGAACGCGAGAAGACGGAAAGAGCTCGGAACTGGTAGTAGCACAGATGGTTTGCAATGCCCCCAAGTTTGATGAGACGCTTTTGAAAGTTTGGACAGCATAACTGAAGATGGGAATGAGATCCTCTGCAGTACTGCGACTGACATGTGGGCCACACTTACCAAGAGCCCAGATGTCAGTGACTTCTACT-GCAGGAGAATACTGCAGAGTCTCTGAAGATGCCT-GGGCATACAGCCATTGTGCCCCTTTTTCAGTTACTGCCACTAGACTTAACTGCTATAGTCTGATATCAATACTAACACTGTTGTCTCAAACAACAACTTATATTTTTGGGATGTAACACAATTCTACTTGGAAATCAATTTGGAGAGATGCTCATGTGAATGATTTGTCTGCATTGCTAAA]
[+] EMBL AK068008 [GCCTCAGCCTCTGTCCGTCTCGCGCGCCGGCTGCCGCTGCACTTGCCCATGGCCATGGCGCCGCCGTCTCCTCCCTGCCTCCTCCGCGCCCTCCTCCCTGTCGCCTCCTCCTCTTCTCGGGGGCTCCGCCGCCGGCCTACTACCTCCTTGCTCCGCTGCTCCTCGCCGTCGGCGGATGCGGCGTCGCCGTCGGGGGAGGGTGGCCGCGAGTACGAGCCCTCCTTCGCCGACGACTTCCTCCTCGCCTTCTTCCGTGCCAAGATGGTGGAGGAGGTTGGATGGGATTCTGAAAAGCCTGGCTACAATGGACTGATTGAAGTTGCCAACCGCCTCATGATCAAGGGGAAGAGTGCGTTGGAGACAGAGCAATCAGCTGTCCGAGTACTCCGATCACTGTTTCCCCCTCTCTTGCTTGTTCTCTTCAAAGCTCTTTTAGCACCAATTGCTAATGGTCAATTGGCTTCCATGATGGTTGCTAGAGCAACAGCACTTTCATGCCAATGGCTGATGGGGCCATGTTTGTTAAATTCCATAACATTATCCAATGGAAAATCATTATCAAGCGGGGTATTTGTTGAGAAGTGCAAATATTTGGAAGAGAGCAAATGCCTTGGTGTTTGTATCAACACATGCAAACTGCCAACTCAGACATTCTTCAAGGATCACATGGGTGTTGATTTGTATATGGAACCAAACTTTGAAGACTATAGCTGCCAGTTCAACTTTGGGGTGTCACCTCCACCTCTTGACACCGACAAAGCCCTAAAGGAGCCCTGCTTGGACATATGCACGAACGCGAGAAGACGGAAAGAGCTCGGAACTGGTAGTAGCACAGATGGTTTGCAATGCCCCCAAGTTTGATGAGACGCTTTTGAAAGTTTGGACAGCATAACTGAAGATGGGAATGAGATCCTCTGCAGTACTGCGACTGACATGTGGGCCACACTTACCAAGAGCCCAGATGTCAGTGACTTCTACT GCAGGAGAATACTGCAGAGTCTCTGAAGATGCCT GGGCATACAGCCATTGTGCCCCTTTTTCAGTTACTGCCACTAGACTTAACTGCTATAGTCTGATATCAATACTAACACTGTTGTCTCAAACAACAACTTATATTTTTGGGATGTAACACAATTCTACTTGGAAATCAATTTGG ]
[+] EMBL AU065948 [ CACATGCAAACTGCCAACTCAGACATTCTTCAAGGATCACATGGGTGTTGATTTGTATATGGAACCAAACTTTGAAGACTATAGCTGCCAGTTCAACTTTGGGGTGTCACCTCCACCTCTTGACACCGACAAAGCCCTAAAGGAGCCCTGCTTGGACATATGCACGAACGCGAGAAGACGGAAAGAGCTCGGAACTGGTAGTAGCACAGATGGTTTGCAATGCCCCCAAGTTTGATGAGACGCTTTTGAAAGTTTGGACAGCATAACTGAAGATGGGAATGAGATCCTCTGCAGTACTGCGACTGACATGTGGGCCACACTTACCAAGAGCCCAGATGTCAGTGACTTCTACTGGCAGGAGAATACTGCAGAGTCTCTGAAGATGCCTGGGGCATACAGCCATTGTGCCCCTTTTTCAGTTACTGCCACTAGACTTAACTGCTATAGTCTGATATCAATACTAACACTGTTGTCTCAAACAACAACTTATATTTTTGGGATGTAACACAATTCTACTTGGAAATCAATTTGGAGAGATGCTCATGTGAATGATTTGTCTGCATTGCTAAA]
consensusID : consensus_5275#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence
[AGAGGACGAGACAAGGGGGGAACTGGTAGTAGCACAGATGGTTTGCAATGTCCCCAAGTTTGATGAGACGCTTTTGAAAGTTTGGACAGCATAACTGAAGATGGGAATGAGATCCTCTGCAGTACTGCGACTGACATGTGGGCCACACTTACCAAGGGCCCAGATGTCAGCGACTTTTACTGCAGGAGAATACTGCAGAGTTGAATCTCTGAAGATGCCTGGGCATACAGCCATTGTGCCCCTTTTTCAGTTACTGCCCCTAGACTTAACTGCTATAGTTTGATTATCAATACTAACACTGTTGTCTCAAACAACAGCTTATATTTTTGGGATGTAACACAATTTTACTTGGAAATCAATTTGGAGAGATGCTCATGTGAAAAAAAAAAAAAA]
[-] EMBL CA761656 [AGAGGACGAGACAAGGGGGGAACTGGTAGTAGCACAGATGGTTTGCAATGTCCCCAAGTTTGATGAGACGCTTTTGAAAGTTTGGACAGCATAACTGAAGATGGGAATGAGATCCTCTGCAGTACTGCGACTGACATGTGGGCCACACTTACCAAGGGCCCAGATGTCAGCGACTTTTACTGCAGGAGAATACTGCAGAGTTGAATCTCTGAAGATGCCTGGGCATACAGCCATTGTGCCCCTTTTTCAGTTACTGCCCCTAGACTTAACTGCTATAGTTTGATTATCAATACTAACACTGTTGTCTCAAACAACAGCTTATATTTTTGGGATGTAACACAATTTTACTTGGAAATCAATTTGGAGAGATGCTCATGTGAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5275#0 GCCTCAGCCTCTGTCCGTCTCGCGCGCCGGCTGCCGCTGCACTTGCCCATGGCCATGGCG 60
consensus_5275#1 ------------------------------------------------------------
consensus_5275#0 CCGCCGTCTCCTCCCTGCCTCCTCCGCGCCCTCCTCCCTGTCGCCTCCTCCTCTTCTCGG 120
consensus_5275#1 ------------------------------------------------------------
consensus_5275#0 GGGCTCCGCCGCCGGCCTACTACCTCCTTGCTCCGCTGCTCCTCGCCGTCGGCGGATGCG 180
consensus_5275#1 ------------------------------------------------------------
consensus_5275#0 GCGTCGCCGTCGGGGGAGGGTGGCCGCGAGTACGAGCCCTCCTTCGCCGACGACTTCCTC 240
consensus_5275#1 ------------------------------------------------------------
consensus_5275#0 CTCGCCTTCTTCCGTGCCAAGATGGTGGAGGAGGTTGGATGGGATTCTGAAAAGCCTGGC 300
consensus_5275#1 ------------------------------------------------------------
consensus_5275#0 TACAATGGACTGATTGAAGTTGCCAACCGCCTCATGATCAAGGGGAAGAGTGCGTTGGAG 360
consensus_5275#1 ------------------------------------------------------------
consensus_5275#0 ACAGAGCAATCAGCTGTCCGAGTACTCCGATCACTGTTTCCCCCTCTCTTGCTTGTTCTC 420
consensus_5275#1 ------------------------------------------------------------
consensus_5275#0 TTCAAAGCTCTTTTAGCACCAATTGCTAATGGTCAATTGGCTTCCATGATGGTTGCTAGA 480
consensus_5275#1 ------------------------------------------------------------
consensus_5275#0 GCAACAGCACTTTCATGCCAATGGCTGATGGGGCCATGTTTGTTAAATTCCATAACATTA 540
consensus_5275#1 ------------------------------------------------------------
consensus_5275#0 TCCAATGGAAAATCATTATCAAGCGGGGTATTTGTTGAGAAGTGCAAATATTTGGAAGAG 600
consensus_5275#1 ------------------------------------------------------------
consensus_5275#0 AGCAAATGCCTTGGTGTTTGTATCAACACATGCAAACTGCCAACTCAGACATTCTTCAAG 660
consensus_5275#1 ------------------------------------------------------------
consensus_5275#0 GATCACATGGGTGTTGATTTGTATATGGAACCAAACTTTGAAGACTATAGCTGCCAGTTC 720
consensus_5275#1 ------------------------------------------------------------
consensus_5275#0 AACTTTGGGGTGTCACCTCCACCTCTTGACACCGACAAAGCCCTAAAGGAGCCCTGCTTG 780
consensus_5275#1 ------------------------------------------------------------
consensus_5275#0 GACATATGCACGAACGCGAGAAGACGGAAAGAGCTCGGAACTGGTAGTAGCACAGATGGT 840
consensus_5275#1 ------------------AGAGGACGAGACAAGGGGGGAACTGGTAGTAGCACAGATGGT 42
*** **** * ** ************************
consensus_5275#0 TTGCAATGCCCCCAAGTTTGATGAGACGCTTTTGAAAGTTTGGACAGCATAACTGAAGAT 900
consensus_5275#1 TTGCAATGTCCCCAAGTTTGATGAGACGCTTTTGAAAGTTTGGACAGCATAACTGAAGAT 102
******** ***************************************************
consensus_5275#0 GGGAATGAGATCCTCTGCAGTACTGCGACTGACATGTGGGCCACACTTACCAAGAGCCCA 960
consensus_5275#1 GGGAATGAGATCCTCTGCAGTACTGCGACTGACATGTGGGCCACACTTACCAAGGGCCCA 162
****************************************************** *****
consensus_5275#0 GATGTCAGTGACTTCTACTGCAGGAGAATACTGCAGAGT-----CTCTGAAGATGCCTGG 1015
consensus_5275#1 GATGTCAGCGACTTTTACTGCAGGAGAATACTGCAGAGTTGAATCTCTGAAGATGCCTGG 222
******** ***** ************************ ****************
consensus_5275#0 GCATACAGCCATTGTGCCCCTTTTTCAGTTACTGCCACTAGACTTAACTGCTATAGTCTG 1075
consensus_5275#1 GCATACAGCCATTGTGCCCCTTTTTCAGTTACTGCCCCTAGACTTAACTGCTATAGTTTG 282
************************************ ******************** **
consensus_5275#0 AT-ATCAATACTAACACTGTTGTCTCAAACAACAACTTATATTTTTGGGATGTAACACAA 1134
consensus_5275#1 ATTATCAATACTAACACTGTTGTCTCAAACAACAGCTTATATTTTTGGGATGTAACACAA 342
** ******************************* *************************
consensus_5275#0 TTCTACTTGGAAATCAATTTGGAGAGATGCTCATGTGAATGATTTGTCTGCATTGCTAAA 1194
consensus_5275#1 TTTTACTTGGAAATCAATTTGGAGAGATGCTCATGTGAAAAAAAAAAAAAA--------- 393
** ************************************ *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||