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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5276#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1576 fasta sequence
[AGCCCCGCGAGGCAAGCGGATTCACGCACGCGCGCCGCCATCCGCCATGGGTCTCCACGACGCGCCGAGCCGCGGCGGCGCCGGGGGCGGGAAGCTGTCGCTGCTCGCCAGCGTCGGCCTCGCCGGCGCCGGGGGCGGGGGGAGCGGCGGCGTGGGAGGAGGAGGCGGAGGAGGAGGAGGAGGAGGGGGTTACAAGGAGCTGCTCGTGATGGCGCTCCCCAAGGACGACGACCTCGACGCCGGCAAGGTCGCCGACGTCCTCGGCTTCCGGCTGCCCGTCGTGGAAGGGGCCGTGAGGGCCTTTTTTTAGGAGTCGAGAGGTTAGAGAATTTGCCAGTGGAGCATTAGCTGGTGCTATGTCTAAAGCTGTTCTTGCTCCTCTCGAGACTATCAGGACAAGAATGGTTGTAGGAGTAGGATCTAGGCATATCGGTGGTAGCTTTGTAGAAATCATCGAACAAAATGGATGGCAAGGGCTTTGGGCAGGTAACACAATCAACATGATCCGTATTATTCCAACTCAAGCAATTGAGCTCGGAACATTCGAGTGTGTCAAAAGGACAATGGCGGAAGCGCAAGAGAAATGGAAAGAAGATGGATGCCCAAAGATACAAATTGGTAAAGTGAAAATTGAATTTCCACTTCAATTTTTATCTCCTGTTGCTGTAGCTGGTGCAGCTGCTGGAATAGCTGGCACATTGGTGTGTCATCCTCTTGAAGTCATTAAGGATCGCTTAACTATTAACCGAGAAGTCTATCCTAGTATTAGCGTCACCTTCAGCAAGATATACCGAACTGATGGAATTCGTGGTCTCTATGCTGGCCTCTGTCCAACACTAATTGGGATGCTTCCTTATAGCACATGCTATTACTTTATGTACGACACAATCAAGACTTCTTACTGCCGCTTACATAAGAAGACGTCTTTGACTCGGCCTGAGCTTCTAGTTATTGGAGCTCTGTCAGGCCTGACCGCAAGCACAATCAGCTTCCCGCTGGAGGTGGCGCGGAAGCGGCTCATGGTGGGTGCCCTGCAAGGGAAGTGCCCACCCCACATGATCGCGGCCCTGGCAGAAGTGATCCAGGAGGAGGGCCTCCCGGGGCTCTACCGCGGGTGGGGGGCCAGCTG-CCTGAAGGTGATGCCCAATTCCGGCATCACCTGGATGTTCTACGAGGCCTGTAAGGACATCCTTTTGGCGGGCAAGGACAAGCGCAAAGCTTAAGGGGAATGTGGCATCGAGCAACTGCAACCTGACGCATTGCATATTTGCAACGTAGAAAACAATAATGAGTTACAAGATTCTTGTATCGGTGGGATTCCTGATCTTTTCCCAGTTTTCGAGTCCCACCCTGGATGACGCCGAAAAAGTGGCTAGATAGGAGACGCTGTTCTTTTTTTTGGCTGGTGGCTGGGAGAGCATGTGTTGTTTCTCGCTAATTTGGAATGCCTGATTAATTACATGTTGTCTAAGTGTTAACCGTGGGGTTTACACACGAGAATGGCTGAAAATGTTGGCATGTACCTCTACCTGATCTTCAGGTGAATACTATCAAATCCTGTGAAATTTCTCTCAAA]
[+] EMBL AK099705 [AGCCCCGCGAGGCAAGCGGATTCACGCACGCGCGCCGCCATCCGCCATGGGTCTCCACGACGCGCCGAGCCGCGGCGGCGCCGGGGGCGGGAAGCTGTCGCTGCTCGCCAGCGTCGGCCTCGCCGGCGCCGGGGGCGGGGGGAGCGGCGGCGTGGGAGGAGGAGGCGGAGGAGGAGGAGGAGGAGGGGGTTACAAGGAGCTGCTCGTGATGGCGCTCCCCAAGGACGACGACCTCGACGCCGGCAAGGTCGCCGACGTCCTCGGCTTCCGGCTGCCCGTCGTGGAAGGGGCCGTGAGGGCCTTTTTTTAGGAGTCGAGAGGTTAGAGAATTTGCCAGTGGAGCATTAGCTGGTGCTATGTCTAAAGCTGTTCTTGCTCCTCTCGAGACTATCAGGACAAGAATGGTTGTAGGAGTAGGATCTAGGCATATCGGTGGTAGCTTTGTAGAAATCATCGAACAAAATGGATGGCAAGGGCTTTGGGCAGGTAACACAATCAACATGATCCGTATTATTCCAACTCAAGCAATTGAGCTCGGAACATTCGAGTGTGTCAAAAGGACAATGGCGGAAGCGCAAGAGAAATGGAAAGAAGATGGATGCCCAAAGATACAAATTGGTAAAGTGAAAATTGAATTTCCACTTCAATTTTTATCTCCTGTTGCTGTAGCTGGTGCAGCTGCTGGAATAGCTGGCACATTGGTGTGTCATCCTCTTGAAGTCATTAAGGATCGCTTAACTATTAACCGAGAAGTCTATCCTAGTATTAGCGTCACCTTCAGCAAGATATACCGAACTGATGGAATTCGTGGTCTCTATGCTGGCCTCTGTCCAACACTAATTGGGATGCTTCCTTATAGCACATGCTATTACTTTATGTACGACACAATCAAGACTTCTTACTGCCGCTTACATAAGAAGACGTCTTTGACTCGGCCTGAGCTTCTAGTTATTGGAGCTCTGTCAGGCCTGACCGCAAGCACAATCAGCTTCCCGCTGGAGGTGGCGCGGAAGCGGCTCATGGTGGGTGCCCTGCAAGGGAAGTGCCCACCCCACATGATCGCGGCCCTGGCAGAAGTGATCCAGGAGGAGGGCCTCCCGGGGCTCTACCGCGGGTGGGGGGCCAGCTG CCTGAAGGTGATGCCCAATTCCGGCATCACCTGGATGTTCTACGAGGCCTGTAAGGACATCCTTTTGGCGGGCAAGGACAAGCGCAAAGCTTAAGGGGAATGTGGCATCGAGCAACTGCAACCTGACGCATTGCATATTTGCAACGTAGAAAACAATAATGAGTTACAAGATTCTTGTATCGGTGGGATTCCTGATCTTTTCCCAGTTTTCGAGTCCCACCCTGGATGACGCCGAAAAAGTGGCTAGATAGGAGACGCTGTTCTTTTTTTTGGCTGGTGGCTGGGAGAGCATGTGTTGTTTCTCGCTAATTTGGAATGCCTGATTAATTACATGTTGTCTAAGTGTTAACCGTGGGGTTTACACACGAGAATGGCTGAAAATGTTGGCATGTACCTCTACCTGATCTTCAGGTGAATACTATCAAATCCTGTGAAATTTCTCTCAAA]
[+] EMBL CA758417 [ GACAATGGCGGAAGCGCAAGAGAAATGGAAAGAAGATGGATGCCCAAAGATACAAATTGGTAAAGTGAAAATTGAATTTCCACTTCAATTTTTATCTCCTGTTGCTGTAGCTGGTGCAGCTGCTGGAATAGCTGGCACATTGGTGTGTCATCCTCTTGAAGTCATTAAGGATCGCTTAACTATTAACCGAGAAGTCTATCCTAGTATTAGCGTCGCCTTCAGCAAGATATACCGAACTGATGGAATTCGTGGTCTCTATGCTGGCCTCTGTCCAACACTAATTGGGATGCTTCCTTATAGCACATGCTATTACTTTATGTACGACACAATCAAGACTTCTTACTGCCGCTTACATAAGAAGACGTCTTTGACTCGGCCTGAGCTTCTAGTTATTGGAGCTCTGTCAGGCCTGACCGCAAGCACAATCAGCTTCCCGCTGGAGGTGGCGCGGAAGCGGCTCATGGTGGGTGCCCTGCAAGGGAAGTGCCCACCCCACATGATCGCGGCCCTGGCAGAAGTGATCCAGGAGGAGGGCCTCCCGGGGCTCTACCGCGGGTGGGGGGCCAGCTGNNCTGAAGGTGATGCCCAA ]
consensusID : consensus_5276#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 223 fasta sequence
[CNAATTCGGCACNAAGTCTAAANCTGTTCTTNNTCCTCTCGAGACTATCAGGACAAGAATGGTTGTGGGAGTACGATCTAAGCATATCGGTGGTAGCTNTGTNGAAATCATCCAACANNATGGATGGCAAGGGCTTTGGGCACGTNACACAATCAACATGATCCGTANTATTCCAACTCAAGCAATTGAGCTCGGAACATTCGAGTGTGTCAAAAGGACAATG]
[+] EMBL BE228926 [CNAATTCGGCACNAAGTCTAAANCTGTTCTTNNTCCTCTCGAGACTATCAGGACAAGAATGGTTGTGGGAGTACGATCTAAGCATATCGGTGGTAGCTNTGTNGAAATCATCCAACANNATGGATGGCAAGGGCTTTGGGCACGTNACACAATCAACATGATCCGTANTATTCCAACTCAAGCAATTGAGCTCGGAACATTCGAGTGTGTCAAAAGGACAATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5276#0 AGCCCCGCGAGGCAAGCGGATTCACGCACGCGCGCCGCCATCCGCCATGGGTCTCCACGA 60
consensus_5276#1 ------------------------------------------------------------
consensus_5276#0 CGCGCCGAGCCGCGGCGGCGCCGGGGGCGGGAAGCTGTCGCTGCTCGCCAGCGTCGGCCT 120
consensus_5276#1 ------------------------------------------------------------
consensus_5276#0 CGCCGGCGCCGGGGGCGGGGGGAGCGGCGGCGTGGGAGGAGGAGGCGGAGGAGGAGGAGG 180
consensus_5276#1 ------------------------------------------------------------
consensus_5276#0 AGGAGGGGGTTACAAGGAGCTGCTCGTGATGGCGCTCCCCAAGGACGACGACCTCGACGC 240
consensus_5276#1 ------------------------------------------------------------
consensus_5276#0 CGGCAAGGTCGCCGACGTCCTCGGCTTCCGGCTGCCCGTCGTGGAAGGGGCCGTGAGGGC 300
consensus_5276#1 ------------------------------------------------------------
consensus_5276#0 CTTTTTTTAGGAGTCGAGAGGTTAGAGAATTTGCCAGTGGAGCATTAGCTGGTGCTATGT 360
consensus_5276#1 -------------------------------------------CNAATTCGGCACNAAGT 17
* ** * * **
consensus_5276#0 CTAAAGCTGTTCTTGCTCCTCTCGAGACTATCAGGACAAGAATGGTTGTAGGAGTAGGAT 420
consensus_5276#1 CTAAANCTGTTCTTNNTCCTCTCGAGACTATCAGGACAAGAATGGTTGTGGGAGTACGAT 77
***** ******** ********************************* ****** ***
consensus_5276#0 CTAGGCATATCGGTGGTAGCTTTGTAGAAATCATCGAACAAAATGGATGGCAAGGGCTTT 480
consensus_5276#1 CTAAGCATATCGGTGGTAGCTNTGTNGAAATCATCCAACANNATGGATGGCAAGGGCTTT 137
*** ***************** *** ********* **** ******************
consensus_5276#0 GGGCAGGTAACACAATCAACATGATCCGTATTATTCCAACTCAAGCAATTGAGCTCGGAA 540
consensus_5276#1 GGGCACGTNACACAATCAACATGATCCGTANTATTCCAACTCAAGCAATTGAGCTCGGAA 197
***** ** ********************* *****************************
consensus_5276#0 CATTCGAGTGTGTCAAAAGGACAATGGCGGAAGCGCAAGAGAAATGGAAAGAAGATGGAT 600
consensus_5276#1 CATTCGAGTGTGTCAAAAGGACAATG---------------------------------- 223
**************************
consensus_5276#0 GCCCAAAGATACAAATTGGTAAAGTGAAAATTGAATTTCCACTTCAATTTTTATCTCCTG 660
consensus_5276#1 ------------------------------------------------------------
consensus_5276#0 TTGCTGTAGCTGGTGCAGCTGCTGGAATAGCTGGCACATTGGTGTGTCATCCTCTTGAAG 720
consensus_5276#1 ------------------------------------------------------------
consensus_5276#0 TCATTAAGGATCGCTTAACTATTAACCGAGAAGTCTATCCTAGTATTAGCGTCACCTTCA 780
consensus_5276#1 ------------------------------------------------------------
consensus_5276#0 GCAAGATATACCGAACTGATGGAATTCGTGGTCTCTATGCTGGCCTCTGTCCAACACTAA 840
consensus_5276#1 ------------------------------------------------------------
consensus_5276#0 TTGGGATGCTTCCTTATAGCACATGCTATTACTTTATGTACGACACAATCAAGACTTCTT 900
consensus_5276#1 ------------------------------------------------------------
consensus_5276#0 ACTGCCGCTTACATAAGAAGACGTCTTTGACTCGGCCTGAGCTTCTAGTTATTGGAGCTC 960
consensus_5276#1 ------------------------------------------------------------
consensus_5276#0 TGTCAGGCCTGACCGCAAGCACAATCAGCTTCCCGCTGGAGGTGGCGCGGAAGCGGCTCA 1020
consensus_5276#1 ------------------------------------------------------------
consensus_5276#0 TGGTGGGTGCCCTGCAAGGGAAGTGCCCACCCCACATGATCGCGGCCCTGGCAGAAGTGA 1080
consensus_5276#1 ------------------------------------------------------------
consensus_5276#0 TCCAGGAGGAGGGCCTCCCGGGGCTCTACCGCGGGTGGGGGGCCAGCTGCCTGAAGGTGA 1140
consensus_5276#1 ------------------------------------------------------------
consensus_5276#0 TGCCCAATTCCGGCATCACCTGGATGTTCTACGAGGCCTGTAAGGACATCCTTTTGGCGG 1200
consensus_5276#1 ------------------------------------------------------------
consensus_5276#0 GCAAGGACAAGCGCAAAGCTTAAGGGGAATGTGGCATCGAGCAACTGCAACCTGACGCAT 1260
consensus_5276#1 ------------------------------------------------------------
consensus_5276#0 TGCATATTTGCAACGTAGAAAACAATAATGAGTTACAAGATTCTTGTATCGGTGGGATTC 1320
consensus_5276#1 ------------------------------------------------------------
consensus_5276#0 CTGATCTTTTCCCAGTTTTCGAGTCCCACCCTGGATGACGCCGAAAAAGTGGCTAGATAG 1380
consensus_5276#1 ------------------------------------------------------------
consensus_5276#0 GAGACGCTGTTCTTTTTTTTGGCTGGTGGCTGGGAGAGCATGTGTTGTTTCTCGCTAATT 1440
consensus_5276#1 ------------------------------------------------------------
consensus_5276#0 TGGAATGCCTGATTAATTACATGTTGTCTAAGTGTTAACCGTGGGGTTTACACACGAGAA 1500
consensus_5276#1 ------------------------------------------------------------
consensus_5276#0 TGGCTGAAAATGTTGGCATGTACCTCTACCTGATCTTCAGGTGAATACTATCAAATCCTG 1560
consensus_5276#1 ------------------------------------------------------------
consensus_5276#0 TGAAATTTCTCTCAAA 1576
consensus_5276#1 ----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||