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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5285#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1226 fasta sequence
[TTCCTCCCTTCCCGGGAACCCCGGCCGGCGGCGACCGGCGACCTCCCCTCCGAGTCGGCGACTGGGTGCCATAGAGGAAGGAGGCGGTGGAGACACCGGCGGTGGCAAGGGCGACATCGGCGAAGAGTTCGCCTCCCTCCTCCTCCCATCCTATCCCACGGAAGCCAGAGGAAAACCTTGCAATTTTGCGGGATGGTGTGGAGCCAAATATAATCTGCTGGAGTCCAAAGTGACCCATGGAAGGACATCATCCGATAGGCATTTGCTGTTGAGACTTTGGGTTCCGGATTTGGCCTTCCCATGGAATCTGATGAAGATGCTAAGAAGGGGTATGCTGATTTTGAGGAGAGGGTAAAGAGAACGATATATATCGATCACCTTTCTCCTCAAGTCACAAGCTCAGTAATTGAAGCAGCTATTTCCCAGTGTGCACGCGTTGTCAATGTGGACTTCATTGTTAATTACACAATCCCATATGATATTCCTTCTGCTGCGTTGGTGGAACTAGATGATGAAATACAAGCTAAGGCTGCTATCGACTTGATGAATAATTTCCCTTTCATAATCGGTGGAAAGCCAAGGCCTGTAAGAGCTATCTATGCAAAGCATGAAATGTTTCTGGATCGGCCTCCTCGCCCTGGAATCAAGAAAGAGTTCCAGTGGGTGAAACAAGAAGATG-GAATAGAGTATGAAGGAATGAACAAACTGCGGCTCCTTGCAAGAAGGCAGGAAACAGAAAATATGGCACTCATAAAGAATCTATTGGAAGAGGACAAGGACCTAGCAAAGCAGCAACAGGAGTTACTTGATGGAATTTACAAGAAGTACTGCATACTAGACAGTGACGTGATGAATGATATCAAGAACCTCTCTCGCCGTTATGGAGTCAACCTGGCCGGTGACTGATCAGTTTTGACCATCCAAGAGACGGACTGCTTCAAAAGGTCCAGATCAGTCCCCAGGGCGAGCAACATGCATTGGTGTGACCCAATAACTGCATCTTCTATGTAAATATTTTTTTTGAGAACTTTCTATGCAAAGATTCTGTAGTGTTACTGTTGTTCCCGCATCCTGACCCACCCAGCAACAGTATGCTCGTTTTGTGATGTGTATAGGAGTAACTTCTTGCGCTGCGCGGAGATGATTCGCTGCTGTCGGATGCTGTCTATTATGCATGTCTGAAATTAACTTGCTGTTGATTAATCGGAGGTTACATTCATAAAAAA]
[+] EMBL AK064519 [TTCCTCCCTTCCCGGGAACCCCGGCCGGCGGCGACCGGCGACCTCCCCTCCGAGTCGGCGACTGGGTGCCATAGAGGAAGGAGGCGGTGGAGACACCGGCGGTGGCAAGGGCGACATCGGCGAAGAGTTCGCCTCCCTCCTCCTCCCATCCTATCCCACGGAAGCCAGAGGAAAACCTTGCAATTTTGCGGGATGGTGTGGAGCCAAATATAATCTGCTGGAGTCCAAAGTGACCCATGGAAGGACATCATCCGATAGGCATTTGCTGTTGAGACTTTGGGTTCCGGATTTGGCCTTCCCATGGAATCTGATGAAGATGCTAAGAAGGGGTATGCTGATTTTGAGGAGAGGGTAAAGAGAACGATATATATCGATCACCTTTCTCCTCAAGTCACAAGCTCAGTAATTGAAGCAGCTATTTCCCAGTGTGCACGCGTTGTCAATGTGGACTTCATTGTTAATTACACAATCCCATATGATATTCCTTCTGCTGCGTTGGTGGAACTAGATGATGAAATACAAGCTAAGGCTGCTATCGACTTGATGAATAATTTCCCTTTCATAATCGGTGGAAAGCCAAGGCCTGTAAGAGCTATCTATGCAAAGCATGAAATGTTTCTGGATCGGCCTCCTCGCCCTGGAATCAAGAAAGAGTTCCAGTGGGTGAAACAAGAAGATG GAATAGAGTATGAAGGAATGAACAAACTGCGGCTCCTTGCAAGAAGGCAGGAAACAGAAAATATGGCACTCATAAAGAATCTATTGGAAGAGGACAAGGACCTAGCAAAGCAGCAACAGGAGTTACTTGATGGAATTTACAAGAAGTACTGCATACTAGACAGTGACGTGATGAATGATATCAAGAACCTCTCTCGCCGTTATGGAGTCAACCTGGCCGGTGACTGATCAGTTTTGACCATCCAAGAGACGGACTGCTTCAAAAGGTCCAGATCAGTCCCCAGGGCGAGCAACATGCATTGGTGTGACCCAATAACTGCATCTTCTATGTAAATATTTTTTTTGAGAACTTTCTATGCAAAGATTCTGTAGTGTTACTGTTGTTCCCGCATCCTGACCCACCCAGCAACAGTATGCTCGTTTTGTGATGTGTATAGGAGTAACTTCTTGCGCTGCGCGGAGATGATTCGCTGCTGTCGGATGCTGTCTATTATGCATGTCTGAAATTAACTTGCTGTTGATTAATCGGAGGTTACATT ]
[-] EMBL CF320174 [ CTTGATGAATAATTTCCCTTTCATAATCGGTGGAAAGCCAAGGCCTGTAAGAGCTATCTATGCAAAGCATGAAATGTTTCTGGATCGGCCTCCTCGCCCTGGAATCAAGAAAGAGTTCCAGTGGGTGAAACAAGAAGATGNGAATAGAGTATGAAGGAATGAACAAACTGCGGCTCCTTGCAAGAAGGCAGGAAACAGAAAATATGGCACTCATAAAGAATCTATTGGAAGAGGACAAGGACCTAGCAAAGCAGCAACAGGAGTTACTTGATGGAATTTACAAGAAGTACTGCATACTAGACAGTGACGTGATGAATGATATCAAGAACCTCTCTCGCCGTTATGGAGTCAACCTGGCCGGTGACTGATCAGTTTTGACCATCCAAGAGACGGACTGCTTCAAAAGGTCCAGATCAGTCCCCAGGGCGAGCAACATGCATTGGTGTGACCCAATAACTGCATCTTCTATGTAAATATTTTTTTTGAGAACTTTCTATGCAAAGATTCTGTAGTGTTACTGTTGTTCCCGCATCCTGACCCACCCAGCAACAGTATGCTCGTTTTGTGATGTGTATAGGAGTAACTTCTTGCGCTGCGCGGAGATGATTCGCTGCTGTCGGATGCTGTCTATTATGCATGTCTGAAATTAACTTGCTGTTGATTAATCGGAGGTTACATTCATAAAAAA]
consensusID : consensus_5285#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence
[TTTCCTCCCTTCCCGGGAACCCCGGCCGGCGGCGACCGGCGACCTCCCCTCCGAGTCGGCGACTGGGTGCCATAGAGGAAGGAGGCGGTGGAGACACCGGCGGTGGCAAGGGCGACATCGGCGAAGAGTTCGCCTCCCTCCTCCTCCCATCCTATCCCACGGAAGATTTGGCCTTCCCATGGAATCTGATGAAGATGCTAAGAAGGGGTATGCTGATTTTGAGGAGAGGGTAAAGAGAACGATATATATCGATCACCTTTCTCCTCAAGTCACAAGCTCAGTAATTGAAGCAGCTATTTCCCAGTGTGCACGCGTTGTCAATGTGGACTTCATTGTTAATTACACAATCCCATATGATATTCCTTCTGCTGCGTTGGTGGAACTAGATGATGAAATACAAGCTAAGGCTGCTATCGACTTGATGAATAATTTCCCTTTCATAATCGGTGGAAAGCCAAGGCCTGTAAGAGCTATCTATGCAAAGCATGAAATGTTTCTGGATCGGCCTCCTCGCCCTGGAATCAAGAAAGAGTTCCAGTNGGGTGAAACAAGAAGATGGAATAGAGTATGAAGGAATGAACAAACTGCGGCTCCTTGCAAGAAGGCAGGAAACAGAAAATATGGCACTC]
[+] EMBL CF320173 [TTTCCTCCCTTCCCGGGAACCCCGGCCGGCGGCGACCGGCGACCTCCCCTCCGAGTCGGCGACTGGGTGCCATAGAGGAAGGAGGCGGTGGAGACACCGGCGGTGGCAAGGGCGACATCGGCGAAGAGTTCGCCTCCCTCCTCCTCCCATCCTATCCCACGGAAGATTTGGCCTTCCCATGGAATCTGATGAAGATGCTAAGAAGGGGTATGCTGATTTTGAGGAGAGGGTAAAGAGAACGATATATATCGATCACCTTTCTCCTCAAGTCACAAGCTCAGTAATTGAAGCAGCTATTTCCCAGTGTGCACGCGTTGTCAATGTGGACTTCATTGTTAATTACACAATCCCATATGATATTCCTTCTGCTGCGTTGGTGGAACTAGATGATGAAATACAAGCTAAGGCTGCTATCGACTTGATGAATAATTTCCCTTTCATAATCGGTGGAAAGCCAAGGCCTGTAAGAGCTATCTATGCAAAGCATGAAATGTTTCTGGATCGGCCTCCTCGCCCTGGAATCAAGAAAGAGTTCCAGTNGGGTGAAACAAGAAGATGGAATAGAGTATGAAGGAATGAACAAACTGCGGCTCCTTGCAAGAAGGCAGGAAACAGAAAATATGGCACTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5285#0 -TTCCTCCCTTCCCGGGAACCCCGGCCGGCGGCGACCGGCGACCTCCCCTCCGAGTCGGC 59
consensus_5285#1 TTTCCTCCCTTCCCGGGAACCCCGGCCGGCGGCGACCGGCGACCTCCCCTCCGAGTCGGC 60
***********************************************************
consensus_5285#0 GACTGGGTGCCATAGAGGAAGGAGGCGGTGGAGACACCGGCGGTGGCAAGGGCGACATCG 119
consensus_5285#1 GACTGGGTGCCATAGAGGAAGGAGGCGGTGGAGACACCGGCGGTGGCAAGGGCGACATCG 120
************************************************************
consensus_5285#0 GCGAAGAGTTCGCCTCCCTCCTCCTCCCATCCTATCCCACGGAAGCCAGAGGAAAACCTT 179
consensus_5285#1 GCGAAGAGTTCGCCTCCCTCCTCCTCCCATCCTATCCCACGGAAG--------------- 165
*********************************************
consensus_5285#0 GCAATTTTGCGGGATGGTGTGGAGCCAAATATAATCTGCTGGAGTCCAAAGTGACCCATG 239
consensus_5285#1 ------------------------------------------------------------
consensus_5285#0 GAAGGACATCATCCGATAGGCATTTGCTGTTGAGACTTTGGGTTCCGGATTTGGCCTTCC 299
consensus_5285#1 ------------------------------------------------ATTTGGCCTTCC 177
************
consensus_5285#0 CATGGAATCTGATGAAGATGCTAAGAAGGGGTATGCTGATTTTGAGGAGAGGGTAAAGAG 359
consensus_5285#1 CATGGAATCTGATGAAGATGCTAAGAAGGGGTATGCTGATTTTGAGGAGAGGGTAAAGAG 237
************************************************************
consensus_5285#0 AACGATATATATCGATCACCTTTCTCCTCAAGTCACAAGCTCAGTAATTGAAGCAGCTAT 419
consensus_5285#1 AACGATATATATCGATCACCTTTCTCCTCAAGTCACAAGCTCAGTAATTGAAGCAGCTAT 297
************************************************************
consensus_5285#0 TTCCCAGTGTGCACGCGTTGTCAATGTGGACTTCATTGTTAATTACACAATCCCATATGA 479
consensus_5285#1 TTCCCAGTGTGCACGCGTTGTCAATGTGGACTTCATTGTTAATTACACAATCCCATATGA 357
************************************************************
consensus_5285#0 TATTCCTTCTGCTGCGTTGGTGGAACTAGATGATGAAATACAAGCTAAGGCTGCTATCGA 539
consensus_5285#1 TATTCCTTCTGCTGCGTTGGTGGAACTAGATGATGAAATACAAGCTAAGGCTGCTATCGA 417
************************************************************
consensus_5285#0 CTTGATGAATAATTTCCCTTTCATAATCGGTGGAAAGCCAAGGCCTGTAAGAGCTATCTA 599
consensus_5285#1 CTTGATGAATAATTTCCCTTTCATAATCGGTGGAAAGCCAAGGCCTGTAAGAGCTATCTA 477
************************************************************
consensus_5285#0 TGCAAAGCATGAAATGTTTCTGGATCGGCCTCCTCGCCCTGGAATCAAGAAAGAGTTCCA 659
consensus_5285#1 TGCAAAGCATGAAATGTTTCTGGATCGGCCTCCTCGCCCTGGAATCAAGAAAGAGTTCCA 537
************************************************************
consensus_5285#0 GTGGG-TGAAACAAGAAGATGGAATAGAGTATGAAGGAATGAACAAACTGCGGCTCCTTG 718
consensus_5285#1 GTNGGGTGAAACAAGAAGATGGAATAGAGTATGAAGGAATGAACAAACTGCGGCTCCTTG 597
** ** ******************************************************
consensus_5285#0 CAAGAAGGCAGGAAACAGAAAATATGGCACTCATAAAGAATCTATTGGAAGAGGACAAGG 778
consensus_5285#1 CAAGAAGGCAGGAAACAGAAAATATGGCACTC---------------------------- 629
********************************
consensus_5285#0 ACCTAGCAAAGCAGCAACAGGAGTTACTTGATGGAATTTACAAGAAGTACTGCATACTAG 838
consensus_5285#1 ------------------------------------------------------------
consensus_5285#0 ACAGTGACGTGATGAATGATATCAAGAACCTCTCTCGCCGTTATGGAGTCAACCTGGCCG 898
consensus_5285#1 ------------------------------------------------------------
consensus_5285#0 GTGACTGATCAGTTTTGACCATCCAAGAGACGGACTGCTTCAAAAGGTCCAGATCAGTCC 958
consensus_5285#1 ------------------------------------------------------------
consensus_5285#0 CCAGGGCGAGCAACATGCATTGGTGTGACCCAATAACTGCATCTTCTATGTAAATATTTT 1018
consensus_5285#1 ------------------------------------------------------------
consensus_5285#0 TTTTGAGAACTTTCTATGCAAAGATTCTGTAGTGTTACTGTTGTTCCCGCATCCTGACCC 1078
consensus_5285#1 ------------------------------------------------------------
consensus_5285#0 ACCCAGCAACAGTATGCTCGTTTTGTGATGTGTATAGGAGTAACTTCTTGCGCTGCGCGG 1138
consensus_5285#1 ------------------------------------------------------------
consensus_5285#0 AGATGATTCGCTGCTGTCGGATGCTGTCTATTATGCATGTCTGAAATTAACTTGCTGTTG 1198
consensus_5285#1 ------------------------------------------------------------
consensus_5285#0 ATTAATCGGAGGTTACATTCATAAAAAA 1226
consensus_5285#1 ----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||