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Oryza sativa
cluster # 5286 cluster # 5286       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5286#0 length = 1525 sequences # 3  

consensusID : consensus_5286#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1525
fasta sequence
                              [GCAAAACCCTACCGTCGCCGCCGCCCCCGCAGCTATGACGTCATCGCCGGCGGCGAGGCGCCGGCCGCCGGGTCCGCTGGCGCTGGGGCTGGAGTCGTCGGCGAACAAGATCGGCATCGGCGTCGTCTCCCTCTCGGGGGAGATCCTCTCCAACCCGCGTCACACCTACGTCACCCCGCCGGGGCACGGCTTCCTGCCGCGGGAGACGGCGCACCACCACCTCGCCCACCTCCTCCCGCTCCTCCGCGCGGCGCTGGGCGAGGCCGGGGTGACCCCCGCCGACCTCGCCTGCGTGTGCTACACCAAGGGGCCCGGGATGGGCGCGCCGCTCCAGGTCGCCGCCGCCGCGGCGCGCGCGCTCTCGCTGCTCTGGGGGAAGCCGCTCGTCGGCGTGAACCACTGCGTCGCGCACGTCGAGATGGGCCGCGCGGTCACCGGCGCCGTCGACCCCGTCGTGCTCCACGTCTCCGGCGGGAACACGCAGGTCATCGCGTACAGCGAAGGGAGGTACAGGATCTTCGGCGAGACCATCGACATCGCGGTGGGGAACTGCCTCGATCGCTTTGCCAGGGTGCTTGAGCTGTCCAATGATCCTAGCCCTGGGTATAACATCGAGCAGCTTGCGAAGAAGGGAGAGAAGTTCATTGATCTCCCTTATGTTGTAAAGGGTATGGACGTGTCATTTAGTGGCATACTGAGCTTCATTGAAGCTACAGCAATTGAGAAGCTTAAAAATAATGAGTGCACGCCTGCAGATCTATGCTACTCATTGCAGGAAACTCTCTTTGCTATGCTTGTTGAAATCACTGAGCGTGCCATGGCACATTGTGATTCGAAGGATGTTCTTATTGTTGGTGGTGTTGGGTGCAATGAACGTTTGCAAGAGATGATGAGGATAATGTGTTCAGAAAGAGGGGGTAGGCTGTTCGCAACCGATGATCGATACTGTATTGACAACGGGGCAATGATTGCATACACTGGTTTACTGGCATACGCACATGGCATGACCACTCCCCTAGAGGAGTCCACTTTTACTCAAAGATTCCGAACGGACGAAGTTCATGCAATCTGGAGGGAGAAGGAGATGCCAGTGTTAACTAACATCCGTGCCCATGCAATGGCTGAAGTATCCAAAGATGAAGCTTCCGTTCCGACTCCAATTGCTGTAGATTCATGAGGTAATTCTTGTTCTTTTCCTTCCTATCCAAGGAAATAGAATACTTGGAAAGGAAGCCAGAGTCCAGAGACATGTACTTCGGTTGATGATACGAAAGCCTTTGTGGCGGCACATGGGAAGTTTCTTGTACTGCTGTGTGGGGTTAACCTGGTGAAAGATTTGGATCATCGGCAACCTCGTAACACTTATGTATTTCATGTTGTATCTCTCAATAGATGAACCATGATTAAACAAACCACACCGTCTATTTGGTCAGTTAAGCCCTACTCCCTTTTATGTGATCCATTCATTTGATGTAAAAGCGATTCCTGCTGCTAATTTCACTCCCATGCTGTACCTCCTAGGGTG]

[+] EMBL AK102487             [GCAAAACCCTACCGTCGCCGCCGCCCCCGCAGCTATGACGTCATCGCCGGCGGCGAGGCGCCGGCCGCCGGGTCCGCTGGCGCTGGGGCTGGAGTCGTCGGCGAACAAGATCGGCATCGGCGTCGTCTCCCTCTCGGGGGAGATCCTCTCCAACCCGCGTCACACCTACGTCACCCCGCCGGGGCACGGCTTCCTGCCGCGGGAGACGGCGCACCACCACCTCGCCCACCTCCTCCCGCTCCTCCGCGCGGCGCTGGGCGAGGCCGGGGTGACCCCCGCCGACCTCGCCTGCGTGTGCTACACCAAGGGGCCCGGGATGGGCGCGCCGCTCCAGGTCGCCGCCGCCGCGGCGCGCGCGCTCTCGCTGCTCTGGGGGAAGCCGCTCGTCGGCGTGAACCACTGCGTCGCGCACGTCGAGATGGGCCGCGCGGTCACCGGCGCCGTCGACCCCGTCGTGCTCCACGTCTCCGGCGGGAACACGCAGGTCATCGCGTACAGCGAAGGGAGGTACAGGATCTTCGGCGAGACCATCGACATCGCGGTGGGGAACTGCCTCGATCGCTTTGCCAGGGTGCTTGAGCTGTCCAATGATCCTAGCCCTGGGTATAACATCGAGCAGCTTGCGAAGAAGGGAGAGAAGTTCATTGATCTCCCTTATGTTGTAAAGGGTATGGACGTGTCATTTAGTGGCATACTGAGCTTCATTGAAGCTACAGCAATTGAGAAGCTTAAAAATAATGAGTGCACGCCTGCAGATCTATGCTACTCATTGCAGGAAACTCTCTTTGCTATGCTTGTTGAAATCACTGAGCGTGCCATGGCACATTGTGATTCGAAGGATGTTCTTATTGTTGGTGGTGTTGGGTGCAATGAACGTTTGCAAGAGATGATGAGGATAATGTGTTCAGAAAGAGGGGGTAGGCTGTTCGCAACCGATGATCGATACTGTATTGACAACGGGGCAATGATTGCATACACTGGTTTACTGGCATACGCACATGGCATGACCACTCCCCTAGAGGAGTCCACTTTTACTCAAAGATTCCGAACGGACGAAGTTCATGCAATCTGGAGGGAGAAGGAGATGCCAGTGTTAACTAACATCCGTGCCCATGCAATGGCTGAAGTATCCAAAGATGAAGCTTCCGTTCCGACTCCAATTGCTGTAGATTCATGAGGTAATTCTTGTTCTTTTCCTTCCTATCCAAGGAAATAGAATACTTGGAAAGGAAGCCAGAGTCCAGAGACATGTACTTCGGTTGATGATACGAAAGCCTTTGTGGCGGCACATGGGAAGTTTCTTGTACTGCTGTGTGGGGTTAACCTGGTGAAAGATTTGGATCATCGGCAACCTCGTAACACTTATGTATTTCATGTTGTATCTCTCAATAGATGAACCATGATTAAACAAACCACACCGTCTATTTGGTCAGTTAAGCCCTACTCCCTTTTATGTGATCCATTCATTTGATGTAAAAGCGATTCCTGCTGCTAATTTCACTCCCATGCTGTACCTCCTAGGGTG]
[+] EMBL AK059566             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AATGTGTTCAGAAAGAGGGGGTAGGCTGTTCGCAACCGATGATCGATACTGTATTGACAACGGGGCAATGATTGCATACACTGGTTTACTGGCATACGCACATGGCATGACCACTCCCCTAGAGGAGTCCACTTTTACTCAAAGATTCCGAACGGACGAAGTTCATGCAATCTGGAGGGAGAAGGAGATGCCAGTGTTAACTAACATCCGTGCCCATGCAATGGCTGAAGTATCCAAAGATGAAGCTTCCGTTCCGACTCCAATTGCTGTAGATTCATGAGGTAATTCTTGTTCTTTTCCTTCCTATCCAAGGAAATAGAATACTTGGAAAGGAAGCCAGAGTCCAGAGACATGTACTTCGGTTGATGATACGAAAGCCTTTGTGGCGGCACATGGGAAGTTTCTTGTACTGCTGTGTGGGGTTAACCTGGTGAAAGATTTGGATCATCGGCAACCTCGTAACACTTATGTATTTCATGTTGTATCTCTCAATAGATGAACCATGATTAAACAAACCACACCGTCTATTTGGTCAGTTAAGCCCTACTCCCTTTTATGTGATCCATTCATTTGATGTAAAAGCGAT                                          ]
[+] EMBL CA767437             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AACGGGGCAATGATTGCATACACTGGTTTACTGGCATACGCACATGGCATGACCACTCCCCTAGAGGAGTCCACTTTTACTCAAAGATTCCGAACGGACGAAGTTCATGCAATCTGGAGGGAGAAGGAGATGCCAGTGTTAACTAACATCCGTGCCCATGCAATGGCTGAAGTATCCAAAGATGAAGCTTCCGTTCCGACTCCAATTGCTGTAGATTCATGAGGTAATTCTTGTTCTTTTCCTTCCTATCCAAGGAAATAGAATACTTGGAAAGGAAGCCAGAGTCCAGAGACATGTACTTCGGTTGAAGATACGAAAGCCTTTGTGGCGGCACATGGGAAGTTTCTTGTACTGCTGTGTGGGGTTAACCTGGTGAAAGATTTGGATCATCGGCAACCTCGTAACACTTGTGTATTTCATGTTGTATCTCTCAATAGATGAACCATGATTAAACAAACCACACCGTCTATTTGGTCAGTTAAGCCCTACTCCCTTTTATGTGATCCATTCATTTGATGTAAAAGCGATTCCTACTGCTAATTTC                          ]


>consensus_5286#0 GCAAAACCCTACCGTCGCCGCCGCCCCCGCAGCTATGACGTCATCGCCGGCGGCGAGGCG CCGGCCGCCGGGTCCGCTGGCGCTGGGGCTGGAGTCGTCGGCGAACAAGATCGGCATCGG CGTCGTCTCCCTCTCGGGGGAGATCCTCTCCAACCCGCGTCACACCTACGTCACCCCGCC GGGGCACGGCTTCCTGCCGCGGGAGACGGCGCACCACCACCTCGCCCACCTCCTCCCGCT CCTCCGCGCGGCGCTGGGCGAGGCCGGGGTGACCCCCGCCGACCTCGCCTGCGTGTGCTA CACCAAGGGGCCCGGGATGGGCGCGCCGCTCCAGGTCGCCGCCGCCGCGGCGCGCGCGCT CTCGCTGCTCTGGGGGAAGCCGCTCGTCGGCGTGAACCACTGCGTCGCGCACGTCGAGAT GGGCCGCGCGGTCACCGGCGCCGTCGACCCCGTCGTGCTCCACGTCTCCGGCGGGAACAC GCAGGTCATCGCGTACAGCGAAGGGAGGTACAGGATCTTCGGCGAGACCATCGACATCGC GGTGGGGAACTGCCTCGATCGCTTTGCCAGGGTGCTTGAGCTGTCCAATGATCCTAGCCC TGGGTATAACATCGAGCAGCTTGCGAAGAAGGGAGAGAAGTTCATTGATCTCCCTTATGT TGTAAAGGGTATGGACGTGTCATTTAGTGGCATACTGAGCTTCATTGAAGCTACAGCAAT TGAGAAGCTTAAAAATAATGAGTGCACGCCTGCAGATCTATGCTACTCATTGCAGGAAAC TCTCTTTGCTATGCTTGTTGAAATCACTGAGCGTGCCATGGCACATTGTGATTCGAAGGA TGTTCTTATTGTTGGTGGTGTTGGGTGCAATGAACGTTTGCAAGAGATGATGAGGATAAT GTGTTCAGAAAGAGGGGGTAGGCTGTTCGCAACCGATGATCGATACTGTATTGACAACGG GGCAATGATTGCATACACTGGTTTACTGGCATACGCACATGGCATGACCACTCCCCTAGA GGAGTCCACTTTTACTCAAAGATTCCGAACGGACGAAGTTCATGCAATCTGGAGGGAGAA GGAGATGCCAGTGTTAACTAACATCCGTGCCCATGCAATGGCTGAAGTATCCAAAGATGA AGCTTCCGTTCCGACTCCAATTGCTGTAGATTCATGAGGTAATTCTTGTTCTTTTCCTTC CTATCCAAGGAAATAGAATACTTGGAAAGGAAGCCAGAGTCCAGAGACATGTACTTCGGT TGATGATACGAAAGCCTTTGTGGCGGCACATGGGAAGTTTCTTGTACTGCTGTGTGGGGT TAACCTGGTGAAAGATTTGGATCATCGGCAACCTCGTAACACTTATGTATTTCATGTTGT ATCTCTCAATAGATGAACCATGATTAAACAAACCACACCGTCTATTTGGTCAGTTAAGCC CTACTCCCTTTTATGTGATCCATTCATTTGATGTAAAAGCGATTCCTGCTGCTAATTTCA CTCCCATGCTGTACCTCCTAGGGTG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)