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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5290#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 905 fasta sequence
[CGATGATGTTAAGTAAGAAAAAAGCGAGACGCTGGAAAATTTCAGTGAAAAGCTGGAGGTCGAAGGGCGCAGCTTGTGGCAGGACGCACGTCGACGTTTTATGCATAACCGTGCGGCGGTTGCCAGTCTGATAGTGCTGGTGCTGATCGCGTTATTTGTAATCCTGGCACCGATGCTTTCCCAGTTTGCCTATGACGATACTGACTGGGCGATGATGTCCAGCGCCCCGGATATGGAGTCCGGTCACTACTTTGGTACTGACTCATCCGGTCGCGACCTGCTTGTGCGCGTTGCGATTGGCGGGCGTATCTCACTCATGGTCGGTGTTGCTGCGGCACTGGTGGCTGTGGTCGTCGGGACACTTTATGGTTCGCTTTCCGGTTATCTGGGCGGTAAAGTGGATTCGGTAATGATGCGTCTGCTGGAAATCCTCAACTCCTTCCCATTCATGTTCTTCGTCATTTTGCTGGTGACCTTTTTCGGTCAAAACATCCTGCTGATTTTCGTGGCGATAGGCATGGTTTCCTGGCTGGATATGGCTCGTATTGTGCGTGGGCAAACCCTGAGTCTGAAGCGCAAAGAGTTTATTGAGGCGGCACAAGTTGGCGGTGTATCGACATCGGGCATTGTTATTCGCCACATTGTGCCGAATGTACTCGGTGTGGTGGTGGTCTACGCATCACTTCTGGTGCCCAGCATGATCCTCTTTGAATCTTTCCTTAGCTTCCTGGGGTTGGGTACGCAAGAGCCGTTAAGCAGCTGGGGTGCATTGCTGAGTGATGGCGCGAACTCGATGGAAGTCTCTCCATGGTTATTGTTGTTCCCAGCGGGATTCCTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATC]
[+] EMBL CF340073 [CGATGATGTTAAGTAAGAAAAAAGCGAGACGCTGGAAAATTTCAGTGAAAAGCTGGAGGTCGAAGGGCGCAGCTTGTGGCAGGACGCACGTCGACGTTTTATGCATAACCGTGCGGCGGTTGCCAGTCTGATAGTGCTGGTGCTGATCGCGTTATTTGTAATCCTGGCACCGATGCTTTCCCAGTTTGCCTATGACGATACTGACTGGGCGATGATGTCCAGCGCCCCGGATATGGAGTCCGGTCACTACTTTGGTACTGACTCATCCGGTCGCGACCTGCTTGTGCGCGTTGCGATTGGCGGGCGTATCTCACTCATGGTCGGTGTTGCTGCGGCACTGGTGGCTGTGGTCGTCGGGACACTTTATGGTTCGCTTTCCGGTTATCTGGGCGGTAAAGTGGATTCGGTAATGATGCGTCTGCTGGAAATCCTCAACTCCTTCCCATTCATGTTCTTCGTCATTTTGCTGGTGACCTTTTTCGGTCAAAACATCCTGCTGATTTTCGTGGCGATAGGCATGGTTTCCTGGCTGGATATGGCTCGTATTGTGCGTGGGCAAACCCTGAGTCTGAAGCGCAAAGAGTTTATTGAGGC ]
[-] EMBL CF306713 [ CGTCGGGACACTTTATGGTTCGCTTTCCGGTTATCTGGGCGGTAAAGTGGATTCGGTAATGATGCGTCTGCTGGAAATCCTCAACTCCTTCCCATTCATGTTCTTCGTCATTTTGCTGGTGACCTTTTTCGGTCAAAACATCCTGCTGATTTTCGTGGCGATAGGCATGGTTTCCTGGCTGGATATGGCTCGTATTGTGCGTGGGCAAACCCTGAGTCTGAAGCGCAAAGAGTTTATTGAGGCGGCACAAGTTGGCGGTGTATCGACATCGGGCATTGTTATTCGCCACATTGTGCCGAATGTACTCGGTGTGGTGGTGGTCTACGCATCACTTCTGGTGCCCAGCATGATCCTCTTTGAATCTTTCCTTAGCTTCCTGGGGTTGGGTACGCAAGAGCCGTTAAGCAGCTGGGGTGCATTGCTGAGTGATGGCGCGAACTCGATGGAAGTCTCTCCATGGTTATTGTTGTTCCCAGCGGGATTCCTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATC]
consensusID : consensus_5290#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence
[GCTGTGGTCGTCGGGACACTTTATGGTTCGCTTTCCGGTTATCTGGGCGGTAAAGTGGATTCNNTAATGATGCGTCTGCTGGAAATCCTCAACTCCTTCCCATTCATGTTCTTCGTCATTTTGCTGGTGACCTTTTTCNNTCAAAACATCCTGCTGATTTTCGTGGCGATAGGCATGGTNTCCTGGCTGGATATGGCTCNNNTTGTGCGTGGGCAAACCCTGNNTCTGNNNNGNNNNNNNNTTATTGAGGCGGCACANGNNNNNGNNNTATCCACN]
[+] EMBL CF195763 [GCTGTGGTCGTCGGGACACTTTATGGTTCGCTTTCCGGTTATCTGGGCGGTAAAGTGGATTCNNTAATGATGCGTCTGCTGGAAATCCTCAACTCCTTCCCATTCATGTTCTTCGTCATTTTGCTGGTGACCTTTTTCNNTCAAAACATCCTGCTGATTTTCGTGGCGATAGGCATGGTNTCCTGGCTGGATATGGCTCNNNTTGTGCGTGGGCAAACCCTGNNTCTGNNNNGNNNNNNNNTTATTGAGGCGGCACANGNNNNNGNNNTATCCACN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5290#0 CGATGATGTTAAGTAAGAAAAAAGCGAGACGCTGGAAAATTTCAGTGAAAAGCTGGAGGT 60
consensus_5290#1 ------------------------------------------------------------
consensus_5290#0 CGAAGGGCGCAGCTTGTGGCAGGACGCACGTCGACGTTTTATGCATAACCGTGCGGCGGT 120
consensus_5290#1 ------------------------------------------------------------
consensus_5290#0 TGCCAGTCTGATAGTGCTGGTGCTGATCGCGTTATTTGTAATCCTGGCACCGATGCTTTC 180
consensus_5290#1 ------------------------------------------------------------
consensus_5290#0 CCAGTTTGCCTATGACGATACTGACTGGGCGATGATGTCCAGCGCCCCGGATATGGAGTC 240
consensus_5290#1 ------------------------------------------------------------
consensus_5290#0 CGGTCACTACTTTGGTACTGACTCATCCGGTCGCGACCTGCTTGTGCGCGTTGCGATTGG 300
consensus_5290#1 ------------------------------------------------------------
consensus_5290#0 CGGGCGTATCTCACTCATGGTCGGTGTTGCTGCGGCACTGGTGGCTGTGGTCGTCGGGAC 360
consensus_5290#1 -------------------------------------------GCTGTGGTCGTCGGGAC 17
*****************
consensus_5290#0 ACTTTATGGTTCGCTTTCCGGTTATCTGGGCGGTAAAGTGGATTCGGTAATGATGCGTCT 420
consensus_5290#1 ACTTTATGGTTCGCTTTCCGGTTATCTGGGCGGTAAAGTGGATTCNNTAATGATGCGTCT 77
********************************************* *************
consensus_5290#0 GCTGGAAATCCTCAACTCCTTCCCATTCATGTTCTTCGTCATTTTGCTGGTGACCTTTTT 480
consensus_5290#1 GCTGGAAATCCTCAACTCCTTCCCATTCATGTTCTTCGTCATTTTGCTGGTGACCTTTTT 137
************************************************************
consensus_5290#0 CGGTCAAAACATCCTGCTGATTTTCGTGGCGATAGGCATGGTTTCCTGGCTGGATATGGC 540
consensus_5290#1 CNNTCAAAACATCCTGCTGATTTTCGTGGCGATAGGCATGGTNTCCTGGCTGGATATGGC 197
* *************************************** *****************
consensus_5290#0 TCGTATTGTGCGTGGGCAAACCCTGAGTCTGAAGCGCAAAGAGTTTATTGAGGCGGCACA 600
consensus_5290#1 TCNNNTTGTGCGTGGGCAAACCCTGNNTCTGNNNNGNNNNNNNNTTATTGAGGCGGCACA 257
** ******************** **** * ****************
consensus_5290#0 AGTTGGCGGTGTATCGACATCGGGCATTGTTATTCGCCACATTGTGCCGAATGTACTCGG 660
consensus_5290#1 NGNNNNNGNNNTATCCACN----------------------------------------- 276
* * **** **
consensus_5290#0 TGTGGTGGTGGTCTACGCATCACTTCTGGTGCCCAGCATGATCCTCTTTGAATCTTTCCT 720
consensus_5290#1 ------------------------------------------------------------
consensus_5290#0 TAGCTTCCTGGGGTTGGGTACGCAAGAGCCGTTAAGCAGCTGGGGTGCATTGCTGAGTGA 780
consensus_5290#1 ------------------------------------------------------------
consensus_5290#0 TGGCGCGAACTCGATGGAAGTCTCTCCATGGTTATTGTTGTTCCCAGCGGGATTCCTCGT 840
consensus_5290#1 ------------------------------------------------------------
consensus_5290#0 GGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAA 900
consensus_5290#1 ------------------------------------------------------------
consensus_5290#0 AGATC 905
consensus_5290#1 -----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||