These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5302#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 763 fasta sequence [CACCTCCCAATCTCCTCTCAGCCGCCGCCCTTCCTCCCGGGCTCCCGGCTCCCGCGAGACGCCACCACGGGGGCGGGGCCCGCGTGTGGCGGACGGCGACGGCGACGGCGACGACGGGGGCTGGGCCGCGTGCGGCGAATGGCGACGGCGACATCGGGGGCGGTGCCGCGTAGGGCGGATGGCGACGGCGGTTGCTCGGCGGCGCGAGGCGACGACTTGCGGCTTGCGGCGACGAGCGTAACCGGCCGCGCCGCCGTCGGGGCGGCCGGGTCACGGCGACGGCCAGCGCGAGGCGACGTCGTGTGGGTGCGGCGGACGGCAACGCCGGCCTCGGGGCGGCCGGATCCGGGGTTGGCGGCCCTGGAGCCGCGGGATCCGACGTCGTGAGGCGACGACGACGGAGGGGGCTCGGCGGCGCGAGGGGACGGCGTGCGGCGGACGGCGACGAGCGGATCCGGCGTGCGACGTGCGACGGCAACGGCGGGAACTCGGCGGCGCGAAGCGACGGCGTGCGGCGGACGGCGACGAGCTTTTTTCAATGTTTTAATTTGGATTTTTCTGTTTATTATGATTCGGATATCCGGCAAAAACGGTCGGATAGTTTCCGACCGAATCCGAGTTCTGACGGATACCATCGCTACTGTATTTGAATTCGTATCCGAGAAAAACTATCTGAATTCGTATCCGAATCCGAAAATATCTGAAAAAATCCGACCGCAACAATCCGCATCCGAAAAACAGGATCGGAACTCGGAAATTATCC] [+] EMBL AK111323 [CACCTCCCAATCTCCTCTCAGCCGCCGCCCTTCCTCCCGGGCTCCCGGCTCCCGCGAGACGCCACCACGGGGGCGGGGCCCGCGTGTGGCGGACGGCGACGGCGACGGCGACGACGGGGGCTGGGCCGCGTGCGGCGAATGGCGACGGCGACATCGGGGGCGGTGCCGCGTAGGGCGGATGGCGACGGCGGTTGCTCGGCGGCGCGAGGCGACGACTTGCGGCTTGCGGCGACGAGCGTAACCGGCCGCGCCGCCGTCGGGGCGGCCGGGTCACGGCGACGGCCAGCGCGAGGCGACGTCGTGTGGGTGCGGCGGACGGCAACGCCGGCCTCGGGGCGGCCGGATCCGGGGTTGGCGGCCCTGGAGCCGCGGGATCCGACGTCGTGAGGCGACGACGACGGAGGGGGCTCGGCGGCGCGAGGGGACGGCGTGCGGCGGACGGCGACGAGCGGATCCGGCGTGCGACGTGCGACGGCAACGGCGGGAACTCGGCGGCGCGAAGCGACGGCGTGCGGCGGACGGCGACGAGCTTTTTTCAATGTTTTAATTTGGATTTTTCTGTTTATTATGATTCGGATATCCGGCAAAAACGGTCGGATAGTTTCCGACCGAATCCGAGTTCTGACGGATACCATCGCTACTGTATTTGAATTCGTATCCGAGAAAAACTATCTGAATTCGTATCCGAATCCGAAAATATCTGAAAAAATCCGACCGCAACAATCCGCATCCGAAAAACAGGATCGGAACTCGGAAATTATCC] [-] EMBL CF326619 [ GGCCGGGTCACGGCGACGGCCAGCGCGAGGCGACGTCGTGTGGGTGCGGCGGACGGCAACGCCGGCCTCGGGGCGGCCGGATCCGGGGTTGGCGGCCCTGGAGCCGCGGGATCCGACGTCGTGAGGCGACGACGACGGAGGGGGCTCGGCGGCGCGAGGGGACGGCGTGCGGCGGACGGCGACGAGCGGATCCGGCGTGCGACGTGCGACGGCAACGGCGGGAACTCGGCGGCGCGAAGCGACGGCGTGCGGCGGACGGCGACGAGCTTTTTTCAATGTTTTAATAGAAATTTTTCTGTTTATTATGATTCGGATATCCGGCAAAAACGGTCGGATAGTTTCCGACCGAATCCGAGTTCTGACGGATACCATCGCTACTGTATTTGAATTCGTATCCGAGAAAAACTATCCGAATTCGaaaaa ] consensusID : consensus_5302#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence [CTCAGCCGCCGCCCTTCCTCCCGGGCTCCCGGCTCCCGCGAGACGCCACCACGGGGGCGGGGCCCGCGTGTGGCGGACGGCGACGGCGACGGCGACGACGNGGGCTGGGCCGCGTGCGCGAATGGCGACGGCGACATCGGGGGCGNTGNCGCGTAGGGCGGATGTCGACGNCGGTTGCTCGNCGGCGCGAGGCGACGACTTGCGGCTTGCGTCGACGAGCGTAACCNTNCGTGTCGNCGTCGGGNCGCCCNTNTCANGGCGACGTCANNNNTANNNACGTCGTGTGGGNTGNGNCGTACNGAAANNNTTCTTTNTGNGCGGCNGNATCGTNGNTTTNNGNTCTTGGAATCTNGNGGATTCTTAAGTTGTNAANNTAAGATGAACGAAGNNTGGTTTTGNGTTGTNAANGGAATTTGTTGNNTGNATNTNATNATTGAATTTTGGTTTTAAGTTTNANNGAAAGTNTNAAATTTGNTNTTAAANNTGTNTTNNTGTTAATNTTANNANTTTTTTAAATNTTTAATTNGANTTTNTTGTTATNATATTTNGTTATNGGAAAAATNTNNGTAATTTNNGNAATNTNTTTTNGATNAATNNTNTTTATTANTTGNTTTGAAAATTTNNATTNTTTGAAAANNATNAATANNAAATTGTN] [+] EMBL AU069581 [CTCAGCCGCCGCCCTTCCTCCCGGGCTCCCGGCTCCCGCGAGACGCCACCACGGGGGCGGGGCCCGCGTGTGGCGGACGGCGACGGCGACGGCGACGACGNGGGCTGGGCCGCGTGCGCGAATGGCGACGGCGACATCGGGGGCGNTGNCGCGTAGGGCGGATGTCGACGNCGGTTGCTCGNCGGCGCGAGGCGACGACTTGCGGCTTGCGTCGACGAGCGTAACCNTNCGTGTCGNCGTCGGGNCGCCCNTNTCANGGCGACGTCANNNNTANNNACGTCGTGTGGGNTGNGNCGTACNGAAANNNTTCTTTNTGNGCGGCNGNATCGTNGNTTTNNGNTCTTGGAATCTNGNGGATTCTTAAGTTGTNAANNTAAGATGAACGAAGNNTGGTTTTGNGTTGTNAANGGAATTTGTTGNNTGNATNTNATNATTGAATTTTGGTTTTAAGTTTNANNGAAAGTNTNAAATTTGNTNTTAAANNTGTNTTNNTGTTAATNTTANNANTTTTTTAAATNTTTAATTNGANTTTNTTGTTATNATATTTNGTTATNGGAAAAATNTNNGTAATTTNNGNAATNTNTTTTNGATNAATNNTNTTTATTANTTGNTTTGAAAATTTNNATTNTTTGAAAANNATNAATANNAAATTGTN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5302#0 CACCTCCCAATCTCCTCTCAGCCGCCGCCCTTCCTCCCGGGCTCCCGGCTCCCGCGAGAC 60 consensus_5302#1 ----------------CTCAGCCGCCGCCCTTCCTCCCGGGCTCCCGGCTCCCGCGAGAC 44 ******************************************** consensus_5302#0 GCCACCACGGGGGCGGGGCCCGCGTGTGGCGGACGGCGACGGCGACGGCGACGACGGGGG 120 consensus_5302#1 GCCACCACGGGGGCGGGGCCCGCGTGTGGCGGACGGCGACGGCGACGGCGACGACGNGGG 104 ******************************************************** *** consensus_5302#0 CTGGGCCGCGTGCGGCGAATGGCGACGGCGACATCGGGGGCGGTGCCGCGTAGGGCGGAT 180 consensus_5302#1 CTGGGCCGCGTGCG-CGAATGGCGACGGCGACATCGGGGGCGNTGNCGCGTAGGGCGGAT 163 ************** *************************** ** ************** consensus_5302#0 GGCGACGGCGGTTGCTCGGCGGCGCGAGGCGACGACTTGCGGCTTGCGGCGACGAGCGTA 240 consensus_5302#1 GTCGACGNCGGTTGCTCGNCGGCGCGAGGCGACGACTTGCGGCTTGCGTCGACGAGCGTA 223 * ***** ********** ***************************** *********** consensus_5302#0 ACCGGCCGCGCCGCCGTCGGGGCGGCCGGGTCACGGCGACGGCCAGCGCGAGGCGACGTC 300 consensus_5302#1 ACCNTNCGTGTCGNCGTCGGGNCGCCCNTNTCANGGCGACGTC--ANNNNTANNNACGTC 281 *** ** * ** ******* ** ** *** ******* * ***** consensus_5302#0 GTGTGGGT-GCGGCGGACGGCAACGCCGGCCTCGGGGCGGCCGGATCCGGGGTTGGCGGC 359 consensus_5302#1 GTGTGGGNTGNGNCGTACNGAAANNNTTCTTTNTGNGCGGCNGNATCGTNGNTTTNNGNT 341 ******* * * ** ** * ** * * ***** * *** * ** * consensus_5302#0 CCTGGAGCCGCGGGA--TCCGACGTCGTGAGGCGACGACGA-CGGAGGG-GGCTCGGCGG 415 consensus_5302#1 CTTGGAATCTNGNGGATTCTTAAGTTGTNAANNTAAGATGAACGAAGNNTGGTTTTGNGT 401 * **** * * * ** * ** ** * * ** ** ** ** ** * * * consensus_5302#0 CGCGAGGGGACGGCGTGCGGCGGACGGCGACGAGCGGATCCGGCGTGCGACGTGCGACGG 475 consensus_5302#1 TGTNAANGGAATTTGTTGNNTGNATN-TNATNATTGAATTTTG-GTTTTAAGTTTNANNG 459 * * *** ** * * * * * ** * ** * ** * * consensus_5302#0 CAACGGCGGGAACTCGGCGGCGCGAAGCGACGGCGTGCGGCGGACGGCGACGAGCTTTTT 535 consensus_5302#1 -AAAGTNTNAAATTTGNT-------NTTAAANNTGTNTTNNTGTTAATNTTANNANTTTT 511 ** * ** * * * ** * **** consensus_5302#0 TCAATGTTTTAATTTGGATTTTTCTGTTTATTATGATTCGGATATCCGGCAAAAACGGTC 595 consensus_5302#1 TTAAATNTTTAATTNGANTTTNTTG--TTATNAT-ATTTNGTTATNGG--AAAAATN--T 564 * ** ******* * *** * **** ** *** * *** * ***** consensus_5302#0 GGATAGTTTCCGACCGAATCCGAGTTCTGACGGATACCATC-GCTACTGTATTTGAA--T 652 consensus_5302#1 NNGTAATTTNNG---NAATNTNT-TTTNGATNAATNNTNTTTATTANTTGNTTTGAAAAT 620 ** *** * *** ** ** ** * ** * ****** * consensus_5302#0 TCGTATCCGAGAAAAACTATCTGAATTCGTATCCGAATCCGAAAATATCTGAAAAAATCC 712 consensus_5302#1 TTNNATTNTTTGAAAANNATN--AATANNAAATTGTN----------------------- 655 * ** **** ** *** * * consensus_5302#0 GACCGCAACAATCCGCATCCGAAAAACAGGATCGGAACTCGGAAATTATCC 763 consensus_5302#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||