cluster # 5303

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Oryza sativa
cluster # 5303 cluster # 5303 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5303#0 length = 815 sequences # 2

consensus_5303#1 length = 419 sequences # 1

consensusID : consensus_5303#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 815
fasta sequence

                              [GAATTCAGCAGCTGTTTTAAGTCTTTGAATAGCAAGAAGCCATGTTAGGCTTTAGGCTTCTCTGAACGTGACCAACCCTTAAGCTAACAAAACCATGTCCCTGTGCTACCATGATGTACAGCTATCTCAGTGGAACATAAAAATTCTAACTAACCCAAACTGCATAAGCCACAAAGAAAGTAGTAAATCCCATGACTACATCAAGATGACTGCGATTTCCATTGTTGTATCGCCACACGCAAGGAATGGTTGGGAATTATGGATAAATATTGGAGCCTTTGTTTTGTGACAGGGGATGTCTTGTGTTTCTTGAGCCAAGCTTTTATTGCCCTGTGCTCGTAGGTGTGCCCATCAGCAGCAACATAAGGGTCATCCATTACCTCCTGCAATATTGGGCAGATGAAGTGGCTCGGCACAGCTGCGTTTGGACTTCTTAATGTGGGAGAAGCAGTAATTCTGCTCAGAATGCTCTCGATCTCTGGCAGCACCTCCGATTCAAGGCTAGGCCTGTCTCTACATTTTAAAGCTGTACACCGCACCGCCAATTTTGCCAAGATCTCTGCCTCAGCGATTGGCCAATCAATCTGAGAACTGTCAAGAACATCGGAAATTGAGTCTTTTTTTATCGCTTCTTCTGCACTAAGTATCAGCCCGTGTGGGCGCTTGCCAGTCAGTAGTTGAAGAATGATGATCCCCAGAGCATAAACATCAGATTTCGGACGAATTGTCCCAGTTAACTGGTATTCCGGATCCATGTAATACAGTGTGCCGGCAACTGCAGTATCTCTGTACTCTGTGAGCCCTTCCGGCACAAT]

[+] EMBL CB627136             [GAATTCAGCAGCTGTTTTAAGTCTTTGAATAGCAAGAAGCCATGTTAGGCTTTAGGCTTCTCTGAACGTGACCAACCCTTAAGCTAACAAAACCATGTCCCTGTGCTACCATGATGTACAGCTATCTCAGTGGAACATAAAAATTCTAACTAACCCAAACTGCATAAGCCACAAAGAAAGTAGTAAATCCCATGACTACATCAAGATGACTGCGATTTCCATTGTTGTATCGCCACACGCAAGGAATGGTTGGGAATTATGGATAAATATTGGAGCCTTTGTTTTGTGACAGGGGATGTCTTGTGTTTCTTGAGCCAAGCTTTTATTGCCCTGTGCTCGTAGGTGTGCCCATCAGCAGCAACATAAGGGTCATCCATTACCTCCTGCAATATTGGGCAGATGAAGTGGCTCGGCACAGCTGCGTTTGGACTTCTTAATGTGGGAGAAGCAGTAATTCTGCTCAGAATGCTCTCGATCTCTGGCAGCACCTCCGATTCAAGGCTAGGCCTGTCTCTACATTTTAAAGCTGTACACCGCACCGCCAATTTTGCCAAGATCTCTGCCTCAGCGATTGGCCAATCAATCTGAGAACTGTCAAGAACATCGGAAATTGAGTCTTTTTTTATCGCTTCTTCTGCACTAAGTATCAGCCCGTGTGGGCGCTTGCCAGTCAGTAGTTGAAGAATGATGATCCCCAGAGCATAAACATCAGATTTCGGACGAATTGTCCCAGTTAACTGGTATTCCGGATCCATGTAATACAGTGTGCCGGCAACTGCAGTATCTCTGTACTCTGTGAGCCCTTCCGGCACAAT]
[+] EMBL CF568770             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CCGCCAATTTTGCCAAGATCTCTGCCTCAGCGATTGGCCAATCAATCTGAGAACTGTCAAGAACATCGGAAATTGAGTCTTTTTTTATCGCTTCTTCTGCACTAAGTATCAGCCCGTGTGGGCGCTTGCCAGTCAGTAGTTGAAGAATGATGATCCCCAGAGCATAAACATCAGATTTCGGACGAATTGTCCCAGTTAACTGGTA                                                                        ]




>consensus_5303#0
GAATTCAGCAGCTGTTTTAAGTCTTTGAATAGCAAGAAGCCATGTTAGGCTTTAGGCTTC
TCTGAACGTGACCAACCCTTAAGCTAACAAAACCATGTCCCTGTGCTACCATGATGTACA
GCTATCTCAGTGGAACATAAAAATTCTAACTAACCCAAACTGCATAAGCCACAAAGAAAG
TAGTAAATCCCATGACTACATCAAGATGACTGCGATTTCCATTGTTGTATCGCCACACGC
AAGGAATGGTTGGGAATTATGGATAAATATTGGAGCCTTTGTTTTGTGACAGGGGATGTC
TTGTGTTTCTTGAGCCAAGCTTTTATTGCCCTGTGCTCGTAGGTGTGCCCATCAGCAGCA
ACATAAGGGTCATCCATTACCTCCTGCAATATTGGGCAGATGAAGTGGCTCGGCACAGCT
GCGTTTGGACTTCTTAATGTGGGAGAAGCAGTAATTCTGCTCAGAATGCTCTCGATCTCT
GGCAGCACCTCCGATTCAAGGCTAGGCCTGTCTCTACATTTTAAAGCTGTACACCGCACC
GCCAATTTTGCCAAGATCTCTGCCTCAGCGATTGGCCAATCAATCTGAGAACTGTCAAGA
ACATCGGAAATTGAGTCTTTTTTTATCGCTTCTTCTGCACTAAGTATCAGCCCGTGTGGG
CGCTTGCCAGTCAGTAGTTGAAGAATGATGATCCCCAGAGCATAAACATCAGATTTCGGA
CGAATTGTCCCAGTTAACTGGTATTCCGGATCCATGTAATACAGTGTGCCGGCAACTGCA
GTATCTCTGTACTCTGTGAGCCCTTCCGGCACAAT

consensusID : consensus_5303#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 419
fasta sequence

                              [TGAATTCNGCAGCTGTTTTAAGTCTTTGAATAGCAAGAAGCCATGTTAGGCTTTAGGCTTCTCTGAACGTGACCAACCCTTAAGCTAACAAAACCATGTCCCTGTGCTACCATGATGTACAGCTATCTCAGTGGCAACCATCAAAACACATTCTCAACTAACCCAAACGTGCATAAGCCCACAAAGCAAAGTCAGTCAACATCCCATGCACTACATCAAGCATGCACTGCGCATTTCCCATTGCTTGTATCGCCACACGCCAAGGCAATGGTTGGGCAATTATGGATCAAATATTTGGAGCCTTTGTTTTGTGCACAGGGGCATGTCTTGTGTTTACTTGAGCCAAGCTTTAATTCGCCCTGTGCTCGTAGGTGTGCCCATCAGCAGCAACATAAGGGTCATCCATATACCTCCTGCAA]

[-] EMBL BQ907871             [TGAATTCNGCAGCTGTTTTAAGTCTTTGAATAGCAAGAAGCCATGTTAGGCTTTAGGCTTCTCTGAACGTGACCAACCCTTAAGCTAACAAAACCATGTCCCTGTGCTACCATGATGTACAGCTATCTCAGTGGCAACCATCAAAACACATTCTCAACTAACCCAAACGTGCATAAGCCCACAAAGCAAAGTCAGTCAACATCCCATGCACTACATCAAGCATGCACTGCGCATTTCCCATTGCTTGTATCGCCACACGCCAAGGCAATGGTTGGGCAATTATGGATCAAATATTTGGAGCCTTTGTTTTGTGCACAGGGGCATGTCTTGTGTTTACTTGAGCCAAGCTTTAATTCGCCCTGTGCTCGTAGGTGTGCCCATCAGCAGCAACATAAGGGTCATCCATATACCTCCTGCAA]




>consensus_5303#1
TGAATTCNGCAGCTGTTTTAAGTCTTTGAATAGCAAGAAGCCATGTTAGGCTTTAGGCTT
CTCTGAACGTGACCAACCCTTAAGCTAACAAAACCATGTCCCTGTGCTACCATGATGTAC
AGCTATCTCAGTGGCAACCATCAAAACACATTCTCAACTAACCCAAACGTGCATAAGCCC
ACAAAGCAAAGTCAGTCAACATCCCATGCACTACATCAAGCATGCACTGCGCATTTCCCA
TTGCTTGTATCGCCACACGCCAAGGCAATGGTTGGGCAATTATGGATCAAATATTTGGAG
CCTTTGTTTTGTGCACAGGGGCATGTCTTGTGTTTACTTGAGCCAAGCTTTAATTCGCCC
TGTGCTCGTAGGTGTGCCCATCAGCAGCAACATAAGGGTCATCCATATACCTCCTGCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5303#0      -GAATTCAGCAGCTGTTTTAAGTCTTTGAATAGCAAGAAGCCATGTTAGGCTTTAGGCTT 59
consensus_5303#1      TGAATTCNGCAGCTGTTTTAAGTCTTTGAATAGCAAGAAGCCATGTTAGGCTTTAGGCTT 60
                       ****** ****************************************************

consensus_5303#0      CTCTGAACGTGACCAACCCTTAAGCTAACAAAACCATGTCCCTGTGCTACCATGATGTAC 119
consensus_5303#1      CTCTGAACGTGACCAACCCTTAAGCTAACAAAACCATGTCCCTGTGCTACCATGATGTAC 120
                      ************************************************************

consensus_5303#0      AGCTATCTCAGTGGAA--CATAAAAA-----TTCTAACTAACCCAAAC-TGCATAAGCC- 170
consensus_5303#1      AGCTATCTCAGTGGCAACCATCAAAACACATTCTCAACTAACCCAAACGTGCATAAGCCC 180
                      ************** *  *** ****     *   ************* ********** 

consensus_5303#0      ACAAAG-AAAGT-AGTAAA--TCCCATG-ACTACATCAAG-ATG-ACTGCGA--TTTCCA 221
consensus_5303#1      ACAAAGCAAAGTCAGTCAACATCCCATGCACTACATCAAGCATGCACTGCGCATTTCCCA 240
                      ****** ***** *** **  ******* *********** *** ******   ** ***

consensus_5303#0      TTG-TTGTATCGCCACACGCAAGG--AATGGTTGGG-AATTATGGAT-AAATATT-GGAG 275
consensus_5303#1      TTGCTTGTATCGCCACACGCCAAGGCAATGGTTGGGCAATTATGGATCAAATATTTGGAG 300
                      *** **************** * *  ********** ********** ******* ****

consensus_5303#0      CCTTTGTTTTGTG-ACAGGGG-ATGTCTTGTGTTT-CTTGAGCCAAGCTTTTATT-GCCC 331
consensus_5303#1      CCTTTGTTTTGTGCACAGGGGCATGTCTTGTGTTTACTTGAGCCAAGCTTTAATTCGCCC 360
                      ************* ******* ************* *************** *** ****

consensus_5303#0      TGTGCTCGTAGGTGTGCCCATCAGCAGCAACATAAGGGTCATCCAT-TACCTCCTGCAAT 390
consensus_5303#1      TGTGCTCGTAGGTGTGCCCATCAGCAGCAACATAAGGGTCATCCATATACCTCCTGCAA- 419
                      ********************************************** ************ 

consensus_5303#0      ATTGGGCAGATGAAGTGGCTCGGCACAGCTGCGTTTGGACTTCTTAATGTGGGAGAAGCA 450
consensus_5303#1      ------------------------------------------------------------
                                                                                  

consensus_5303#0      GTAATTCTGCTCAGAATGCTCTCGATCTCTGGCAGCACCTCCGATTCAAGGCTAGGCCTG 510
consensus_5303#1      ------------------------------------------------------------
                                                                                  

consensus_5303#0      TCTCTACATTTTAAAGCTGTACACCGCACCGCCAATTTTGCCAAGATCTCTGCCTCAGCG 570
consensus_5303#1      ------------------------------------------------------------
                                                                                  

consensus_5303#0      ATTGGCCAATCAATCTGAGAACTGTCAAGAACATCGGAAATTGAGTCTTTTTTTATCGCT 630
consensus_5303#1      ------------------------------------------------------------
                                                                                  

consensus_5303#0      TCTTCTGCACTAAGTATCAGCCCGTGTGGGCGCTTGCCAGTCAGTAGTTGAAGAATGATG 690
consensus_5303#1      ------------------------------------------------------------
                                                                                  

consensus_5303#0      ATCCCCAGAGCATAAACATCAGATTTCGGACGAATTGTCCCAGTTAACTGGTATTCCGGA 750
consensus_5303#1      ------------------------------------------------------------
                                                                                  

consensus_5303#0      TCCATGTAATACAGTGTGCCGGCAACTGCAGTATCTCTGTACTCTGTGAGCCCTTCCGGC 810
consensus_5303#1      ------------------------------------------------------------
                                                                                  

consensus_5303#0      ACAAT 815
consensus_5303#1      -----