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Oryza sativa
cluster # 5314 cluster # 5314       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5314#0 length = 692 sequences # 3  

consensusID : consensus_5314#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 692
fasta sequence
                              [GCGCGGGTGCTCTGTATTTTATTTTTATATTTTTTGGGTTTTATAGTTATAACATTACGTACTAAAGACTATCAGTACTAAGGTACTACACATGTCCATCACAGCGTAAATTCATCCATCTTTTTTTTTGGTGTTTTCAAGAGCCCGTGCCAGACCTCCG-CGGTGAAAGTGCAGCCTAGTGCCC-GTTTTTCTCTTCATATCCTTCATTTCCAAGTCG-TAAGGAGCGTCTTTAG-GAAGCTATGTAGCAATATTGACTATGTGCT-GTGCTGGA-GGGTTCTCTCTCGA-GAGTGGGTTGTCGGACCAAGTTCATATGGTTTCTTG-TCGTTGGAAGTCTTGTGCGGGTGCTGGACAAGCTTTTGGGGAACAAAGTCTTTGTCAGGAGGTGAATGGAAGCCTGAAAGCGGGCTCGTGACCGGGTTCGATGCCGCTTAGAGACCAGCAGGAGTCTGGCAGAGGATGCTTTGTCCAAGGATGGGCAGAACGCAGCA-GCGGGCGCGCTGGCCAACACCGGCGCAAGTGGCCTGGAACTGGGCGGCAGAAGTAAGAGTCTTGCCAGGGCCGGCACAGTCGAGGTCAGCAACACCCAAGACGTCGGTGGCACAGCACTGAGGGCTGTCGTAGAGGCCAGAGCACGGGTCGTAGGAGCCCGCTCCGTTACCACCGCCTTCGTTACCACCACCACCATGACCACC]

[+] EMBL CB964464             [GCGCGGGTGCTCTGTATTTTATTTTTATATTTTTTGGGTTTTATAGTTATAACATTACGTACTAAAGACTATCAGTACTAAGGTACTACACATGTCCATCACAGCGTAAATTCATCCATCTTTTTTTTTGGTGTTTTCAAGAGCCCGTGCCAGACCTCCGTCGGTGAAAGTGCAGCCTAGTGCCCTGTTTTTCTCTTCATATCCTTCATTTCCAAGTCGATAAGGAGCGTCTTTAGAGAAGCTATGTAGCAATATTGACTATGTGCTNGTGCTGGACGGGTTCTCTCTCGACGAGTGGGTTGTCGGACCAAGTTCATATGGTTTCTTGATCGTTGGAAGTCTTGTGCGGGTGCTGGACAAGCTTTTGGGGAACAAAGTCTTGGTCAGGAGGTGAATGGAAGCCTGAAAGCGGGCTCGTGACCGGGTTCGATGCCGCTTAGAGACCAGCAGGAGTCTGGCAGAGGATGCTTGGTCCAAGGATGGGCAGAACGCAGCACGCGGGCGCGCTGGCCAACACCGGCGCAAGTGGCCTGGAACTGGGCGGCAGAAGTACGAGTCTTGCCAGAGCCGGCACAGTCGAGGTCAGCAACACCCAAGACGTCGGTGGCACAGACCTGAGGGCTGTCGTAGAGGCCAGAGCACGGGTCGTAGG                                                 ]
[+] EMBL BI305982             [                                            AGTTATAACATTACGTACTAAAGACTATCAGTACTAAGGTACTACACATGTCCATCACAGCGTAAATTCATCCATCTTTTTTTTTGGTGTTTTCAAGAGCCCGTGCCAGACCTCCG CGGTGAAAGTGCAGCCTAGTGCCC GTTTTTCTCTTCATATCCTTCATTTCCAAGTCG TAAGGAGCGTCTTTAG GAAGCTATGTAGCAATATTGACTATGTGCT GTGCTGGA GGGTTCTCTCTCGA GAGTGGGTTGTCGGACCAAGTTCATATGGTTTCTTG TCGTTGGAAGTCTTGTGCGGGTGCTGGACAAGCTTTTGGGGAACAAAGTCTTTGTCAGGAGGTGAATGGAAGCCTGAAAGCGGGCTCGTGACCGGGTTCGATGCCGCTTAGAGACCAGCAGGAGTCTGGCAGAGGATGCTTTGTCCAAGGATGGGCAGAACGCAGCA GCGGGCGCGCTGGCCAACACCGGCGCAAGTGGCCTGGAACTGGGCGGCAGAAGTAAGAGTCTTGCCAGGGCCGGCACAGTCGAGGTCAGCAACACCCAAGACGTCGGTGGCACAGCACTGAGGGCTGTCGTAGAGGCCAGAGCACGGGTCGTAGGAGCCCGCTCCGTTACCACCGCCTTCGTTACCACCACCACCATGACCACC]
[+] EMBL CB967249             [                                            AGTTATAACATTACGTACTAAAGACTATCAGTACTAAGGTACTACACATGTCCATCACAGCGTAAATTCATCCATCTTTTTTTTTGGTGTTTTCAAGAGCCCGTGCCAGACCTCCG CGGTGAAAGTGCAGCCTAGTGCCC GTTTTTCTCTTCATATCCTTCATTTCCAAGTCG TAAGGAGCGTCTTTAG GAAGCTATGTAGCAATATTGACTATGTGCT GTGCTGGA GGGTTCTCTCTCGA GAGTGGGTTGTCGGACCAAGTTCATATGGTTTCTTG TCGTTGGAAGTCTTGTGCGGGTGCTGGCCAAGCTTTTGGGGAACAAAGTCTTTGTCAGGAGGTGAATGGAAGCCTGAAAGCGGGCTCGTGACCGGGTTCGATGCCGCTTAGAGACCAGCAGGAGTCTGGCAGAGGATGCTTTGTCCAAGGATGGGCAGAACGCAGCA GCGGGCGCGCTGGCCAACACCGGCGCAAGTGGCCTGGAACTGGGCGGCAGAAGTAAGAGTCTTGCCAGGGCCGGCACAGTCGAGGTCAGCAACACCCAAGACGTCGGTGGCACAGCACTGAGGGCTGTCGTAGAGGCCAGAGCACGGGTCGTAGGAGCCGCCTCCGTTACCACCGNCTCCGTTACCAC                ]


>consensus_5314#0 GCGCGGGTGCTCTGTATTTTATTTTTATATTTTTTGGGTTTTATAGTTATAACATTACGT ACTAAAGACTATCAGTACTAAGGTACTACACATGTCCATCACAGCGTAAATTCATCCATC TTTTTTTTTGGTGTTTTCAAGAGCCCGTGCCAGACCTCCGCGGTGAAAGTGCAGCCTAGT GCCCGTTTTTCTCTTCATATCCTTCATTTCCAAGTCGTAAGGAGCGTCTTTAGGAAGCTA TGTAGCAATATTGACTATGTGCTGTGCTGGAGGGTTCTCTCTCGAGAGTGGGTTGTCGGA CCAAGTTCATATGGTTTCTTGTCGTTGGAAGTCTTGTGCGGGTGCTGGACAAGCTTTTGG GGAACAAAGTCTTTGTCAGGAGGTGAATGGAAGCCTGAAAGCGGGCTCGTGACCGGGTTC GATGCCGCTTAGAGACCAGCAGGAGTCTGGCAGAGGATGCTTTGTCCAAGGATGGGCAGA ACGCAGCAGCGGGCGCGCTGGCCAACACCGGCGCAAGTGGCCTGGAACTGGGCGGCAGAA GTAAGAGTCTTGCCAGGGCCGGCACAGTCGAGGTCAGCAACACCCAAGACGTCGGTGGCA CAGCACTGAGGGCTGTCGTAGAGGCCAGAGCACGGGTCGTAGGAGCCCGCTCCGTTACCA CCGCCTTCGTTACCACCACCACCATGACCACC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)