cluster # 5320

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Oryza sativa
cluster # 5320 cluster # 5320 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5320#0 length = 1251 sequences # 1

consensus_5320#1 length = 703 sequences # 2

consensusID : consensus_5320#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1251
fasta sequence

                              [AGCGCAGACCACACACGATCTCACTACAATAGTGCTAGCTACGACGAGAGTGTACTAGGACGATGAGCCAGGAGCAGCCGAGGAGGCCGTCGGAGAAGGCGGCCGGCGGCGGCGGCGGCGAGCAGGGGATCCGGTATGGCGACGTGTTCCCGGTGACCGGAAGCCTCGCGGCCAAGCCCATCGCCCCGCGGGACGCGGCGACGATGCAGTCGGCGGAGAACCTCGTGCTGGGGAAGACGGTCAAGGGCGGCCCCGCCGCCGCCATGGAGTCCGCGGCGAGTCGTAACGAGGAGATGGGCGTCGTCGGGCATGACCAGGCCACGGACGCCGCCGCCGAGCAGGGCGTCAACGTCTCCGACACCCTCGTCCCCGGCGGCGGCCGCATCGTCACCGAGTTCGTCGCCGGCCAGGCGGTGGGTCACTACGTGGAGCAGGACGATGGCGCCGCCGTGGTTGCAGGAGTCGTCGGCGCCGCCCCCGGCGCGGTACGGGTGGAGGAACCTGCGAAGATAACAATCGGCGAGGCGCTGGAGGCGGCGGCGCTGGCGGCAGGAGGGACGCCGGTGGAACGCAGCGACGCGGCGGCCATTCAGGCGGCCGAAGCAAAAGCCACCGGCACGGACACCTACATGCCCGGCGGCTTGGCGGCGCAGGCGCAGTCCGCCGCCGTGGCCAACCTCTGGACGGCGCGCGACGCCGACAAGACCAAGCTCGGCGACGTCCTCTCGAACGCGACGGCGAAGCTCGCGGCGGACAAGGAGGTGGAGAGCGGCGACGCGGCGAGGGTGGCCGGAGCGGAGATGCGCAACAAGCCCGGCGCGGCGGCGAGGCCGGGCGGCGTGGCCGCGTCCATGGCCGCGGCCGCGCGCCTCAACCGCGGCCCAACGACATGAGTGGATACGATCCACGCATCGATCCATGTGTATCAAACAGCTCGTGTCGCGACGCGAGCGCGATGTAAAATTAACACGCTTCGGTGTACGTTTTATATGCTTCCATCCCTTCTAGTTTCCGTTGTTGCATTGCATATGGCCATATGGGTGGCTGAAGCTATGTTAGAATCTGTCAGAAGCCGTTTCTTTTCAGTTAGCCTGTAGCTGTTCTCTAGCTAGTTCTTTGGTTCGGTTGGACTGAATTGGATCGTGGGAGTACGGTCAGGAGTGGATCCAGATCAATCAGGTGTTTTTTTTCTGTTATGCATGTAACAAAGTCTGTAATCGAGGAGAATAAATAGAAAAACCAGAAAAGCTT]

[+] EMBL AK106743             [AGCGCAGACCACACACGATCTCACTACAATAGTGCTAGCTACGACGAGAGTGTACTAGGACGATGAGCCAGGAGCAGCCGAGGAGGCCGTCGGAGAAGGCGGCCGGCGGCGGCGGCGGCGAGCAGGGGATCCGGTATGGCGACGTGTTCCCGGTGACCGGAAGCCTCGCGGCCAAGCCCATCGCCCCGCGGGACGCGGCGACGATGCAGTCGGCGGAGAACCTCGTGCTGGGGAAGACGGTCAAGGGCGGCCCCGCCGCCGCCATGGAGTCCGCGGCGAGTCGTAACGAGGAGATGGGCGTCGTCGGGCATGACCAGGCCACGGACGCCGCCGCCGAGCAGGGCGTCAACGTCTCCGACACCCTCGTCCCCGGCGGCGGCCGCATCGTCACCGAGTTCGTCGCCGGCCAGGCGGTGGGTCACTACGTGGAGCAGGACGATGGCGCCGCCGTGGTTGCAGGAGTCGTCGGCGCCGCCCCCGGCGCGGTACGGGTGGAGGAACCTGCGAAGATAACAATCGGCGAGGCGCTGGAGGCGGCGGCGCTGGCGGCAGGAGGGACGCCGGTGGAACGCAGCGACGCGGCGGCCATTCAGGCGGCCGAAGCAAAAGCCACCGGCACGGACACCTACATGCCCGGCGGCTTGGCGGCGCAGGCGCAGTCCGCCGCCGTGGCCAACCTCTGGACGGCGCGCGACGCCGACAAGACCAAGCTCGGCGACGTCCTCTCGAACGCGACGGCGAAGCTCGCGGCGGACAAGGAGGTGGAGAGCGGCGACGCGGCGAGGGTGGCCGGAGCGGAGATGCGCAACAAGCCCGGCGCGGCGGCGAGGCCGGGCGGCGTGGCCGCGTCCATGGCCGCGGCCGCGCGCCTCAACCGCGGCCCAACGACATGAGTGGATACGATCCACGCATCGATCCATGTGTATCAAACAGCTCGTGTCGCGACGCGAGCGCGATGTAAAATTAACACGCTTCGGTGTACGTTTTATATGCTTCCATCCCTTCTAGTTTCCGTTGTTGCATTGCATATGGCCATATGGGTGGCTGAAGCTATGTTAGAATCTGTCAGAAGCCGTTTCTTTTCAGTTAGCCTGTAGCTGTTCTCTAGCTAGTTCTTTGGTTCGGTTGGACTGAATTGGATCGTGGGAGTACGGTCAGGAGTGGATCCAGATCAATCAGGTGTTTTTTTTCTGTTATGCATGTAACAAAGTCTGTAATCGAGGAGAATAAATAGAAAAACCAGAAAAGCTT]




>consensus_5320#0
AGCGCAGACCACACACGATCTCACTACAATAGTGCTAGCTACGACGAGAGTGTACTAGGA
CGATGAGCCAGGAGCAGCCGAGGAGGCCGTCGGAGAAGGCGGCCGGCGGCGGCGGCGGCG
AGCAGGGGATCCGGTATGGCGACGTGTTCCCGGTGACCGGAAGCCTCGCGGCCAAGCCCA
TCGCCCCGCGGGACGCGGCGACGATGCAGTCGGCGGAGAACCTCGTGCTGGGGAAGACGG
TCAAGGGCGGCCCCGCCGCCGCCATGGAGTCCGCGGCGAGTCGTAACGAGGAGATGGGCG
TCGTCGGGCATGACCAGGCCACGGACGCCGCCGCCGAGCAGGGCGTCAACGTCTCCGACA
CCCTCGTCCCCGGCGGCGGCCGCATCGTCACCGAGTTCGTCGCCGGCCAGGCGGTGGGTC
ACTACGTGGAGCAGGACGATGGCGCCGCCGTGGTTGCAGGAGTCGTCGGCGCCGCCCCCG
GCGCGGTACGGGTGGAGGAACCTGCGAAGATAACAATCGGCGAGGCGCTGGAGGCGGCGG
CGCTGGCGGCAGGAGGGACGCCGGTGGAACGCAGCGACGCGGCGGCCATTCAGGCGGCCG
AAGCAAAAGCCACCGGCACGGACACCTACATGCCCGGCGGCTTGGCGGCGCAGGCGCAGT
CCGCCGCCGTGGCCAACCTCTGGACGGCGCGCGACGCCGACAAGACCAAGCTCGGCGACG
TCCTCTCGAACGCGACGGCGAAGCTCGCGGCGGACAAGGAGGTGGAGAGCGGCGACGCGG
CGAGGGTGGCCGGAGCGGAGATGCGCAACAAGCCCGGCGCGGCGGCGAGGCCGGGCGGCG
TGGCCGCGTCCATGGCCGCGGCCGCGCGCCTCAACCGCGGCCCAACGACATGAGTGGATA
CGATCCACGCATCGATCCATGTGTATCAAACAGCTCGTGTCGCGACGCGAGCGCGATGTA
AAATTAACACGCTTCGGTGTACGTTTTATATGCTTCCATCCCTTCTAGTTTCCGTTGTTG
CATTGCATATGGCCATATGGGTGGCTGAAGCTATGTTAGAATCTGTCAGAAGCCGTTTCT
TTTCAGTTAGCCTGTAGCTGTTCTCTAGCTAGTTCTTTGGTTCGGTTGGACTGAATTGGA
TCGTGGGAGTACGGTCAGGAGTGGATCCAGATCAATCAGGTGTTTTTTTTCTGTTATGCA
TGTAACAAAGTCTGTAATCGAGGAGAATAAATAGAAAAACCAGAAAAGCTT

consensusID : consensus_5320#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 703
fasta sequence

                              [GGTCAAGGGCGGCCCNGCCCGCCGCCATGGAGTCCGCGGCGAGTCGTAACGA-GGAGATGGGCGTCGTCGGGC-ATGACCAGGCCACGGACGCCGCCGCCGAGCAGGGCGTCAACGTCTCCGACACCCTCGTCCCCGGCGGCGGCCGCATCGTCACCGAGTTCGTCGCCGGCCAGGTCACACACTTTGTCGTCGATCGACGTCTCTCCGCTGTGCGTGCAGCGTGAACGATCTCCCTTTTCTTTCTTTTTTTTTTTTTTTTTGCAGGCGGTGGGTCACTACGTGGAGCAGGACGATGGCGCCGCCGTGGTTGCAGGAGTCGTCGGCGCCGCCCCCGGCGCGGTACGGGTGGAGGAACCTGCGAAGATAACAATCGGCGAGGCGCTGGAGGCGGCGGCGCTGGCGGCAGGAGGGACGCCGGTGGAACGCAGCGACGCGGCGGCCATTCAGGCGGCCGAAGCAAAAGCCACCGGCACGGACACCTACATGCCCGGCGGCTTGGCGGCGCAGGCGCAGTCCGCCGCCGTGGCCAACCTCTGGACGGCGCGCGACGCCGACAAGACCAAGCTCGGCGACGTCCTCTCGAACGCGACGGCGAAGCTCGCGGCGGACAAGGAGGTGGAGAGCGGCGACGCGGCGAGGGTGGCCGGAGCGGAGACGCGCAACAAGCCCGGCGCGGCGGCGAGGCCGGGCGGCGTGGCCGCGT]

[-] EMBL BI305977             [GGTCAAGGGCGGCCCNGCCCGCCGCCATGGAGTCCGCGGCGAGTCGTAACGA GGAGATGGGCGTCGTCGGGC ATGACCAGGCCACGGACGCCGCCGCCGAGCAGGGCGTCAACGTCTCCGACACCCTCGTCCCCGGCGGCGGCCGCATCGTCACCGAGTTCGTCGCCGGCCAGGTCACACACTTTGTCGTCGATCGACGTCTCTCCGCTGTGCGTGCAGCGTGAACGATCTCCCTTTTCTTTCTTTTTTTTTTTTTTTTTGCAGGCGGTGGGTCACTACGTGGAGCAGGACGATGGCGCCGCCGTGGTTGCAGGAGTCGTCGGCGCCGCCCCCGGCGCGGTACGGGTGGAGGAACCTGCGAAGATAACAATCGGCGAGGCGCTGGAGGCGGCGGCGCTGGCGGCAGGAGGGACGCCGGTGGAACGCAGCGACGCGGCGGCCATTCAGGCGGCCGAAGCAAAAGCCACCGGCACGGACACCTACATGCCCGGCGGCTTGGCGGCGCAGGCGCAGTCCGCCGCCGTGGCCAACCTCTGGACGGCGCGCGACGCCGACAAGACCAAGCTCGGCGACGTCCTCTCGAACGCGACGGCGAAGCTCGCGGCGGACAAGGAGGTGGAGAGCGGCGACGCGGCGAGGGTGGCCGGAGCGGAGACGCGCAACAAGCCCGGCGCGGCGGCGAGGCCGGGCGGCGTGGCCGCG ]
[-] EMBL CB965706             [                                TCCGCGGCGAGTCGTAACGAGGGAGATGGGCGTCGTCGGGCAATGACCAGGCCACGGACGCCGCCGCCGAGCAGGGCGTCAACGTCTCCGACACCCTCGTCCCCGGCGGCGGCCGCATCGTCACCGAGTTCGTCGCCGGCCAGGTCACACACTTCGTCGTCGATCGACGTCTCTCCGCTGTGCGTGCAGCGTGAACGATCTCCCTGTTCTTTCTTTTTTTTTTTTTTTTTGCAGGCGGTGGGTCACTACGTGGAGCAGGACGATGGCGCCGCCGTGGTTGCAGGAGTCGTCGGCGCCGCCCCCGGCGCGGTACGGGTGGAGGAACCTGCGAAGATAACAATCGGCGAGGCGCTGGAGGCGGCGGCGCTGGCGGCAGGAGGGACGCCGGTGGAACGCAGCGACGCGGCGGCCATTCAGGCGGCCGAAGCAAAAGCCACCGGCACGGACACCTACATGCCCGGCGGCTTGGCGGCGCAGGCGCAGTCCGCCGCCGTGGCCAACCTCTGGACGGCGCGCGACGCCGACAAGACCAAGCTCGGCGACGTCCTCTCGAACGCGACGGCGAAGCTCGCGGCGGACAAGGAGGTGGAGAGCGGCGACGCGGCGAGGGTGGCCGGAGCGGAGACGCGCAACAAGCCCGGCGCGGCGGCGA GCCGGGCGGCGT GCCGCGT]




>consensus_5320#1
GGTCAAGGGCGGCCCNGCCCGCCGCCATGGAGTCCGCGGCGAGTCGTAACGAGGAGATGG
GCGTCGTCGGGCATGACCAGGCCACGGACGCCGCCGCCGAGCAGGGCGTCAACGTCTCCG
ACACCCTCGTCCCCGGCGGCGGCCGCATCGTCACCGAGTTCGTCGCCGGCCAGGTCACAC
ACTTTGTCGTCGATCGACGTCTCTCCGCTGTGCGTGCAGCGTGAACGATCTCCCTTTTCT
TTCTTTTTTTTTTTTTTTTTGCAGGCGGTGGGTCACTACGTGGAGCAGGACGATGGCGCC
GCCGTGGTTGCAGGAGTCGTCGGCGCCGCCCCCGGCGCGGTACGGGTGGAGGAACCTGCG
AAGATAACAATCGGCGAGGCGCTGGAGGCGGCGGCGCTGGCGGCAGGAGGGACGCCGGTG
GAACGCAGCGACGCGGCGGCCATTCAGGCGGCCGAAGCAAAAGCCACCGGCACGGACACC
TACATGCCCGGCGGCTTGGCGGCGCAGGCGCAGTCCGCCGCCGTGGCCAACCTCTGGACG
GCGCGCGACGCCGACAAGACCAAGCTCGGCGACGTCCTCTCGAACGCGACGGCGAAGCTC
GCGGCGGACAAGGAGGTGGAGAGCGGCGACGCGGCGAGGGTGGCCGGAGCGGAGACGCGC
AACAAGCCCGGCGCGGCGGCGAGGCCGGGCGGCGTGGCCGCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5320#0      AGCGCAGACCACACACGATCTCACTACAATAGTGCTAGCTACGACGAGAGTGTACTAGGA 60
consensus_5320#1      ------------------------------------------------------------
                                                                                  

consensus_5320#0      CGATGAGCCAGGAGCAGCCGAGGAGGCCGTCGGAGAAGGCGGCCGGCGGCGGCGGCGGCG 120
consensus_5320#1      ------------------------------------------------------------
                                                                                  

consensus_5320#0      AGCAGGGGATCCGGTATGGCGACGTGTTCCCGGTGACCGGAAGCCTCGCGGCCAAGCCCA 180
consensus_5320#1      ------------------------------------------------------------
                                                                                  

consensus_5320#0      TCGCCCCGCGGGACGCGGCGACGATGCAGTCGGCGGAGAACCTCGTGCTGGGGAAGACGG 240
consensus_5320#1      ----------------------------------------------------------GG 2
                                                                                **

consensus_5320#0      TCAAGGGCGGCCCCGCC-GCCGCCATGGAGTCCGCGGCGAGTCGTAACGAGGAGATGGGC 299
consensus_5320#1      TCAAGGGCGGCCCNGCCCGCCGCCATGGAGTCCGCGGCGAGTCGTAACGAGGAGATGGGC 62
                      ************* *** ******************************************

consensus_5320#0      GTCGTCGGGCATGACCAGGCCACGGACGCCGCCGCCGAGCAGGGCGTCAACGTCTCCGAC 359
consensus_5320#1      GTCGTCGGGCATGACCAGGCCACGGACGCCGCCGCCGAGCAGGGCGTCAACGTCTCCGAC 122
                      ************************************************************

consensus_5320#0      ACCCTCGTCCCCGGCGGCGGCCGCATCGTCACCGAGTTCGTCGCCGGCCAGG-------- 411
consensus_5320#1      ACCCTCGTCCCCGGCGGCGGCCGCATCGTCACCGAGTTCGTCGCCGGCCAGGTCACACAC 182
                      ****************************************************        

consensus_5320#0      ------------------------------------------------------------
consensus_5320#1      TTTGTCGTCGATCGACGTCTCTCCGCTGTGCGTGCAGCGTGAACGATCTCCCTTTTCTTT 242
                                                                                  

consensus_5320#0      -----------------------CGGTGGGTCACTACGTGGAGCAGGACGATGGCGCCGC 448
consensus_5320#1      CTTTTTTTTTTTTTTTTTGCAGGCGGTGGGTCACTACGTGGAGCAGGACGATGGCGCCGC 302
                                             *************************************

consensus_5320#0      CGTGGTTGCAGGAGTCGTCGGCGCCGCCCCCGGCGCGGTACGGGTGGAGGAACCTGCGAA 508
consensus_5320#1      CGTGGTTGCAGGAGTCGTCGGCGCCGCCCCCGGCGCGGTACGGGTGGAGGAACCTGCGAA 362
                      ************************************************************

consensus_5320#0      GATAACAATCGGCGAGGCGCTGGAGGCGGCGGCGCTGGCGGCAGGAGGGACGCCGGTGGA 568
consensus_5320#1      GATAACAATCGGCGAGGCGCTGGAGGCGGCGGCGCTGGCGGCAGGAGGGACGCCGGTGGA 422
                      ************************************************************

consensus_5320#0      ACGCAGCGACGCGGCGGCCATTCAGGCGGCCGAAGCAAAAGCCACCGGCACGGACACCTA 628
consensus_5320#1      ACGCAGCGACGCGGCGGCCATTCAGGCGGCCGAAGCAAAAGCCACCGGCACGGACACCTA 482
                      ************************************************************

consensus_5320#0      CATGCCCGGCGGCTTGGCGGCGCAGGCGCAGTCCGCCGCCGTGGCCAACCTCTGGACGGC 688
consensus_5320#1      CATGCCCGGCGGCTTGGCGGCGCAGGCGCAGTCCGCCGCCGTGGCCAACCTCTGGACGGC 542
                      ************************************************************

consensus_5320#0      GCGCGACGCCGACAAGACCAAGCTCGGCGACGTCCTCTCGAACGCGACGGCGAAGCTCGC 748
consensus_5320#1      GCGCGACGCCGACAAGACCAAGCTCGGCGACGTCCTCTCGAACGCGACGGCGAAGCTCGC 602
                      ************************************************************

consensus_5320#0      GGCGGACAAGGAGGTGGAGAGCGGCGACGCGGCGAGGGTGGCCGGAGCGGAGATGCGCAA 808
consensus_5320#1      GGCGGACAAGGAGGTGGAGAGCGGCGACGCGGCGAGGGTGGCCGGAGCGGAGACGCGCAA 662
                      ***************************************************** ******

consensus_5320#0      CAAGCCCGGCGCGGCGGCGAGGCCGGGCGGCGTGGCCGCGTCCATGGCCGCGGCCGCGCG 868
consensus_5320#1      CAAGCCCGGCGCGGCGGCGAGGCCGGGCGGCGTGGCCGCGT------------------- 703
                      *****************************************                   

consensus_5320#0      CCTCAACCGCGGCCCAACGACATGAGTGGATACGATCCACGCATCGATCCATGTGTATCA 928
consensus_5320#1      ------------------------------------------------------------
                                                                                  

consensus_5320#0      AACAGCTCGTGTCGCGACGCGAGCGCGATGTAAAATTAACACGCTTCGGTGTACGTTTTA 988
consensus_5320#1      ------------------------------------------------------------
                                                                                  

consensus_5320#0      TATGCTTCCATCCCTTCTAGTTTCCGTTGTTGCATTGCATATGGCCATATGGGTGGCTGA 1048
consensus_5320#1      ------------------------------------------------------------
                                                                                  

consensus_5320#0      AGCTATGTTAGAATCTGTCAGAAGCCGTTTCTTTTCAGTTAGCCTGTAGCTGTTCTCTAG 1108
consensus_5320#1      ------------------------------------------------------------
                                                                                  

consensus_5320#0      CTAGTTCTTTGGTTCGGTTGGACTGAATTGGATCGTGGGAGTACGGTCAGGAGTGGATCC 1168
consensus_5320#1      ------------------------------------------------------------
                                                                                  

consensus_5320#0      AGATCAATCAGGTGTTTTTTTTCTGTTATGCATGTAACAAAGTCTGTAATCGAGGAGAAT 1228
consensus_5320#1      ------------------------------------------------------------
                                                                                  

consensus_5320#0      AAATAGAAAAACCAGAAAAGCTT 1251
consensus_5320#1      -----------------------