These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5322#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 735 fasta sequence [AGGGAATTGGACCCAATATGGATGGAANCATGAATAGTCATTAGTTCCGTTTTTTGTATACTAATTCAAACTTGCTTTGCTATCTATGGAGAAATATGAATAAAAGAAATTAAGTATTTATCGGGAAAGACTCCGCAAAGAGCCAATTTATTTAAACCCATATTCTATCATATGAATGAAATATAGTTCGAAAAAAGGGAATAAACAAGTTTGCTTAAGACTTATTTATTATGGAATTTCCATCCTCAACAGAGGACTCGAGATGATCAATCCAATCCTGAAATGATAAGAGAAGAATTGACTCTTCTCCAACAAATAAACTATCAACCTCCCGTTTAATTANTTTAATTAATATATTAGATTAGCAATCTATTTTTCCATACACA-NTNTCCGTAACAAAACTAATTAACTATTAACTAGTTAAACTATTGCAATGAAAAGAAAGTTTTTTGGTAGTTATAGAATTCTCGTATTTCTTCGACTCGAATACCAAAAGAAAGAAAAAAATGAAGTAAAAAAAACGCATTTCCTGTAAAGTAAAATTAAGGTCTTTGCTTTTACTTATTTTTTCTTTTACCTAAAAGAAGCAACGCCAAATCAAAATTGAATCCATTCTATCTAACGAGCAGTTCTTATCTTATCTTTACCGGGATGGATCATCTGGATATTTAAAAAATCGCGGATCGAGATCGTTTTCGCTTAACCAAAAAAAAAAAAAAAAAAAAAAAGCGGNCG] [-] EMBL AU162038 [AGGGAATTGGACCCAATATGGATGGAANCATGAATAGTCATTAGTTCCGTTTTTTGTATACTAATTCAAACTTGCTTTGCTATCTATGGAGAAATATGAATAAAAGAAATTAAGTATTTATCGGGAAAGACTCCGCAAAGAGCCAATTTATTTAAACCCATATTCTATCATATGAATGAAATATAGTTCGAAAAAAGGGAATAAACAAGTTTGCTTAAGACTTATTTATTATGGAATTTCCATCCTCAACAGAGGACTCGAGATGATCAATCCAATCCTGAAATGATAAGAGAAGAATTGACTCTTCTCCAACAAATAAACTATCAACCTCCCGTTTAATTANTTTAATTAATATATTAGATTAGCAATCTATTTTTCCATACACA NTN ] [+] EMBL CA765910 [ AATAGTCATTAGTTTCGTTTTTTGTATACTAATTCAAACTTGCTTTGCTATCTATGGAGAAATATGAATAAAAGAAATTAAGTATTTATCGGGAAAGACTCCGCAAAGAGCCAATTTATTTAAACCCATATTCTATCATATGAATGAAATATAGTTCGAAAAAAGGGAATAAACAAGTTTGCTTAAGACTTATTTATTATGGAATTTCCATCCTCAACAGAGGACTCGAGATGATCAATCCAATCCTGAAATGATAAGAGAAGAATTGACTCTTCTCCAACAAATAAACTATCAACCTCCCGTTTAATTAATTTAATTAATATATTAGATTAGCAATCTATTTTTCCATAC CATTTTTCCGTAACAAAACTAATTAACTATTAACTAGTTAAACTATTGCAATGAAAAGAAAGTTTTTTGGTAGTTATAGAATTCTCGTATTTCTTCGACTCGAATACCAAAAGAAAGAAAAAAATGAAGTAAAAAAAACGCATTTCCTGTAAAGTAAAATTAAGGTCTTTGCTTTTACTTATTTTTTCTTTTACCTAAAAGAAGCAACGCCAAATCAAAATTGAATCCATTCTATCTAACGAGCAGTTCTTATCTTATCTTTACCGGGATGGATCATCTGGATATTTAAAAAATCGCGGATCGAGATCGTTTTCGCTTAACCAAAAAAAAAAAAAAAAAAAAAAAGCGGNCG] consensusID : consensus_5322#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 701 fasta sequence [GCCGCGGCACCCGCCGCTATTACCCTTCGTGCTCCCCTCGGCAAAACGGCGCTCCGGCGGCGCCGCGCCCAGTCGGATGTGCGCGGTAAGGCGTCTACGCCGCCGCCGGCANGCGGCGCGCCGCACCGTACCCGGGNAGCCGATTGCGGGGGCGCCTCCCTCTGGCCTTTCGAGCCTCCGCCGTCTGAGCGCTGCGTGCGCGATCAGCCCGNCCGGTGTACTCGCTGCCCGCGCCTCGCGCGGCCGCCCGACTCGCGCGCGCCCGTCGCCCGACACTCCGGGACGCGCTGTGCGGTGTGCGCCCGCCCTCGGTGCCGCGGTCGACTCGCTGGTGGGCGGGGGGTGGTCCATCGCCGGTGGCCAGGCCACACGCTCGTCTGCTGTCCTTATTGGACAATGGAGGGGGGGGGGGGGGGGAGNNTTTTTTTTGGGGTAAGGTTATTAGAATTCTCGTATTTCTTCGACTCGAATACCAAAAGAAAGAAAAAATGAAGTAAAAAAAACGCATTTNNTCNCTGTAAAGTAAAATTAAGGTCTTTGCTTTTACTTATTTTTTCTTTTACCTAAAAGAAGCAACTCCAAATCAAAATTGAATCCATTCTATCTAACGAGCAGTTCTTATCTTATCTTTACCGGGATGGATCATCTGGATATTTAAAAAATCGCGGATCGAGATCGTTTTCGCTTAACCAAAAAAAAAA] [-] EMBL CA760085 [GCCGCGGCACCCGCCGCTATTACCCTTCGTGCTCCCCTCGGCAAAACGGCGCTCCGGCGGCGCCGCGCCCAGTCGGATGTGCGCGGTAAGGCGTCTACGCCGCCGCCGGCANGCGGCGCGCCGCACCGTACCCGGGNAGCCGATTGCGGGGGCGCCTCCCTCTGGCCTTTCGAGCCTCCGCCGTCTGAGCGCTGCGTGCGCGATCAGCCCGNCCGGTGTACTCGCTGCCCGCGCCTCGCGCGGCCGCCCGACTCGCGCGCGCCCGTCGCCCGACACTCCGGGACGCGCTGTGCGGTGTGCGCCCGCCCTCGGTGCCGCGGTCGACTCGCTGGTGGGCGGGGGGTGGTCCATCGCCGGTGGCCAGGCCACACGCTCGTCTGCTGTCCTTATTGGACAATGGAGGGGGGGGGGGGGGGGAGNNTTTTTTTTGGGGTAAGGTTATTAGAATTCTCGTATTTCTTCGACTCGAATACCAAAAGAAAGAAAAAATGAAGTAAAAAAAACGCATTTNNTCNCTGTAAAGTAAAATTAAGGTCTTTGCTTTTACTTATTTTTTCTTTTACCTAAAAGAAGCAACTCCAAATCAAAATTGAATCCATTCTATCTAACGAGCAGTTCTTATCTTATCTTTACCGGGATGGATCATCTGGATATTTAAAAAATCGCGGATCGAGATCGTTTTCGCTTAACCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5322#0 AGGGAATTGGACCCAATATGGATGGAANCATGAATAGTCATTAGTTCCGTTTTTTGTATA 60 consensus_5322#1 --GCCGCGGCACCCGCCGCT-ATTACCCTTCGTGCTCCCCTCGGCAAAACGGCGCTCCGG 57 * * **** ** * * * * consensus_5322#0 CTAATTCAAACTTGCTTTGCTATCTATGGAGAAATATGAATAAAAGAAATTAAGTATTTA 120 consensus_5322#1 CGGCGCCGCGCCCAGTCGGATGTGCGCGGTAAGGCGTCTACGCCGCCGCCGGCANGCGGC 117 * * * * * * * ** * * * consensus_5322#0 TCGGGAAAGACTCCGCAAAGAGCCAATTTATTTAAACCCATATTCTATCATATGAATGAA 180 consensus_5322#1 GCGCCGCACCGTACCCGGGNAGCCGATTGCGGGGGCGCCTCCCTCTGGCCTTTCGAGCCT 177 ** * * * * **** *** ** *** * * * * consensus_5322#0 ATATAGTTCGAAAAAAGGGAATA-AACAAGTTTGCTTAAGACTTATTTATTATGGAATTT 239 consensus_5322#1 CCGCCGTCTGAGCGCTGCGTGCGCGATCAGCCCGNCC--GGTGTACTCGCTGC------C 229 ** ** * * * ** * * ** * * consensus_5322#0 CCATCCTCAACAGAGGACTCGAGATGATCAATCCAATCCTGAAATGATAAGAGAAGAATT 299 consensus_5322#1 CGCGCCTCGCGCGGCCGCCCGACTCGCGCGCGCCCGTCGCCCGACACTCCGGGACGCGCT 289 * **** * * *** * * ** ** * * * ** * * consensus_5322#0 GACTCTTCTCCAACAAATAAACTATCAACCTCCCGTTTAATTANTTTAATTAATATATTA 359 consensus_5322#1 GTGCGGTGTGCGCCCG-----CCCTCGGTGCCGCGGTCGACTCGC-----TGGTGGGCGG 339 * * * * * * ** * ** * * * * * consensus_5322#0 GATTAGCAATCTATTTTTCCATACACANTNTCCGTAACAAAACTAATTAACTATTAACTA 419 consensus_5322#1 GG--GGTGGTCCATCGC-CGGTGGCCAGGCCACACGCTCGTCTGCTGTCCTTATTGGACA 396 * * ** ** * * ** * * **** * consensus_5322#0 GTTAAACTATTGCAATGAAAAGAAAGTTTTTT---GGTA--GTTAT-AGAATTCTCGTAT 473 consensus_5322#1 ATGGAGGGGGGGGGGGGGGGGAGNNTTTTTTTTGGGGTAAGGTTATTAGAATTCTCGTAT 456 * * * * ****** **** ***** ************* consensus_5322#0 TTCTTCGACTCGAATACCAAAAGAAAGAAAAAAATGAAGTAAAAAAAACGCATTTCCT-- 531 consensus_5322#1 TTCTTCGACTCGAATACCAAAAGAAAGAAAAAA-TGAAGTAAAAAAAACGCATTTNNTCN 515 ********************************* ********************* * consensus_5322#0 --GTAAAGTAAAATTAAGGTCTTTGCTTTTACTTATTTTTTCTTTTACCTAAAAGAAGCA 589 consensus_5322#1 CTGTAAAGTAAAATTAAGGTCTTTGCTTTTACTTATTTTTTCTTTTACCTAAAAGAAGCA 575 ********************************************************** consensus_5322#0 ACGCCAAATCAAAATTGAATCCATTCTATCTAACGAGCAGTTCTTATCTTATCTTTACCG 649 consensus_5322#1 ACTCCAAATCAAAATTGAATCCATTCTATCTAACGAGCAGTTCTTATCTTATCTTTACCG 635 ** ********************************************************* consensus_5322#0 GGATGGATCATCTGGATATTTAAAAAATCGCGGATCGAGATCGTTTTCGCTTAACCAAAA 709 consensus_5322#1 GGATGGATCATCTGGATATTTAAAAAATCGCGGATCGAGATCGTTTTCGCTTAACCAAAA 695 ************************************************************ consensus_5322#0 AAAAAAAAAAAAAAAAAAAGCGGNCG 735 consensus_5322#1 AAAAAA-------------------- 701 ****** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||