cluster # 5331

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Oryza sativa
cluster # 5331 cluster # 5331 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5331#0 length = 685 sequences # 1

consensus_5331#1 length = 660 sequences # 2

consensusID : consensus_5331#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 685
fasta sequence

                              [TTTTTTTTTTTTGATAATATAAACATGTATACAGTTCTCAGAAATTAATCATATGATCCTATTGCAAGTTTGCAACTTATGAAGTACCATGTACCCGACTTCTAGGATTCAGAGATGAAGCTATCAATGATGATTTTAGTCACCCTGCACAACTACGCAAGATAAAAAGACATGCACAAAAGCTACAACAATAGTAACTCCAGAAAGTCAATGGGCAGAGAGCTGCAAAGGGTGAGCATTTTGAGTCATTTCTATCGAAGCATGATCATAAGCTATAAGCCAGTGTCTTCTGATACCTATCAAGCCATCTCACTTCTTAACCAAATCAAGGCAGATTCGGCATCTTCTTGACAAGTGCTCACAAAAATCTCTCTATTCTCTGCATTCTTGAAGACGGTATAAGCTTTGGCCTTCTCTTGTTTTGTCACTACCACCATCGAGTTGAGAATGGATATGCACTTCTTGATTGAAGAATCATTGTTTTCCTTTTCTTTTGCTAGATGAGCCTCCCTTTCTCTTGCCAATTGTGCCGCCTCATCTTCAGCTTGTTTGGTTCTCATATCAAGGTACCTTTCCATAAGTCCTTCTACGCCAACACTCTTCTTTTGCTTCTTGGGNTCTTTTTCTTCTTTGGTTCTTGCTCCACTAGAACTCAACAAATGTAGTGCAGGGAAAATAAACAACA]

[+] EMBL CA760168             [TTTTTTTTTTTTGATAATATAAACATGTATACAGTTCTCAGAAATTAATCATATGATCCTATTGCAAGTTTGCAACTTATGAAGTACCATGTACCCGACTTCTAGGATTCAGAGATGAAGCTATCAATGATGATTTTAGTCACCCTGCACAACTACGCAAGATAAAAAGACATGCACAAAAGCTACAACAATAGTAACTCCAGAAAGTCAATGGGCAGAGAGCTGCAAAGGGTGAGCATTTTGAGTCATTTCTATCGAAGCATGATCATAAGCTATAAGCCAGTGTCTTCTGATACCTATCAAGCCATCTCACTTCTTAACCAAATCAAGGCAGATTCGGCATCTTCTTGACAAGTGCTCACAAAAATCTCTCTATTCTCTGCATTCTTGAAGACGGTATAAGCTTTGGCCTTCTCTTGTTTTGTCACTACCACCATCGAGTTGAGAATGGATATGCACTTCTTGATTGAAGAATCATTGTTTTCCTTTTCTTTTGCTAGATGAGCCTCCCTTTCTCTTGCCAATTGTGCCGCCTCATCTTCAGCTTGTTTGGTTCTCATATCAAGGTACCTTTCCATAAGTCCTTCTACGCCAACACTCTTCTTTTGCTTCTTGGGNTCTTTTTCTTCTTTGGTTCTTGCTCCACTAGAACTCAACAAATGTAGTGCAGGGAAAATAAACAACA]




>consensus_5331#0
TTTTTTTTTTTTGATAATATAAACATGTATACAGTTCTCAGAAATTAATCATATGATCCT
ATTGCAAGTTTGCAACTTATGAAGTACCATGTACCCGACTTCTAGGATTCAGAGATGAAG
CTATCAATGATGATTTTAGTCACCCTGCACAACTACGCAAGATAAAAAGACATGCACAAA
AGCTACAACAATAGTAACTCCAGAAAGTCAATGGGCAGAGAGCTGCAAAGGGTGAGCATT
TTGAGTCATTTCTATCGAAGCATGATCATAAGCTATAAGCCAGTGTCTTCTGATACCTAT
CAAGCCATCTCACTTCTTAACCAAATCAAGGCAGATTCGGCATCTTCTTGACAAGTGCTC
ACAAAAATCTCTCTATTCTCTGCATTCTTGAAGACGGTATAAGCTTTGGCCTTCTCTTGT
TTTGTCACTACCACCATCGAGTTGAGAATGGATATGCACTTCTTGATTGAAGAATCATTG
TTTTCCTTTTCTTTTGCTAGATGAGCCTCCCTTTCTCTTGCCAATTGTGCCGCCTCATCT
TCAGCTTGTTTGGTTCTCATATCAAGGTACCTTTCCATAAGTCCTTCTACGCCAACACTC
TTCTTTTGCTTCTTGGGNTCTTTTTCTTCTTTGGTTCTTGCTCCACTAGAACTCAACAAA
TGTAGTGCAGGGAAAATAAACAACA

consensusID : consensus_5331#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 660
fasta sequence

                              [TTTTTTTTTTGTCATCCAACTATAGATAATATAAACATGTATACAGTTCTCAGAAATTAATCATATGATCCTATTGCAAGTTTGCAACTTATGAAGTACCATGTACCCGACTTCTAGGATTCAGAGATGAAGCTATCAATGATGATTTTAGTCACCC-T-GCACAACTACGCAAGATAAAAAGA-CATG-CACAAAAGCTACAATAATAGTAACTCCAGAAAGT-CAATGAGCAGAGAGCTGCAGAGGGTGAGCATTTTGAGTCATTTCTATCGAAGCATGATCATAAGCTATAAGCCAGTGTCTTCTGATACCTATCAAGCCATCTCGCTTCTTAACCAAATCAAGGCAGATTCGGCATCTTCTTGACAA-GTGCTCACAAAAATCTCTCTATTCTCTGCATTCTTGAAGACGGTATAAGCTTTGGCCTTCTCT-TGTTTTGTCACTACCACCATCGAGTTGAGAA-TGGATATGCACTTCTTGAT-TGAAAAATCAT-TGTTTTCCTTT-TCTTT--TGCTAGATGAGCCTCCCCTTCTCTTGCCAAT-TGTGCCGCCTCATCTTCAGCTTGTTTGGTTCTCATATCAGGGTACCTTTCCATAAGTCCTTCTACGCCAACACTCTTCTTTTGCTTCTTGGGNTCTTTTTCTTCTTTGNTTCTTGCTCCACTA]

[+] EMBL CA760167             [TTTTTTTTTTGTCATCCAACTATAGATAATATAAACATGTATACAGTTCTCAGAAATTAATCATATGATCCTATTGCAAGTTTGCAACTTATGAAGTACCATGTACCCGACTTCTAGGATTCAGAGATGAAGCTATCAATGATGATTTTAGTCACCC T GCACAACTACGCAAGATAAAAAGA CATG CACAAAAGCTACAATAATAGTAACTCCAGAAAGT CAATGAGCAGAGAGCTGCAGAGGGTGAGCATTTTGAGTCATTTCTATCGAAGCATGATCATAAGCTATAAGCCAGTGTCTTCTGATACCTATCAAGCCATCTCGCTTCTTAACCAAATCAAGGCAGATTCGGCATCTTCTTGACAA GTGCTCACAAAAATCTCTCTATTCTCTGCATTCTTGAAGACGGTATAAGCTTTGGCCTTCTCT TGTTTTGTCACTACCACCATCGAGTTGAGAA TGGATATGCACTTCTTGAT TGAAAAATCAT TGTTTTCCTTT TCTTT  TGCTAGATGAGCCTCCCCTTCTCTTGCCAAT TGTGCCGCCTCATCTTCAGCTTGTTTGGTTCTCATATCAGGGTACCTTTCCATAAGTCCTTCTACGCCAACACTCTTCTTTTGCTTCTTGGGNTCTTTTTCTTCTTTGNTTCTTGCTCCACTA]
[-] EMBL BI802174             [      agTTGGCCTCCCACTATAGATAATATAAACATGTATACAGTTCTCAGAAATTAATCATATGATCCTA TG AAG TTG AACTTATGAAGTACCATGTACCCGACTTCTAGGATTCAGAGATGAAGCTATCAATGATGATTTTAGTCACCCGTGGCACAACTACGCAAGATAAAAAGACCATGCCACAAAAGCTACAACAATAGTAACTCCAGAAAGTCCAATGAGCAGAGAGCTGCAGAGGGTGAGCATTTGGAGTCATTTCTATCGAAGCATGATCATAAGCTATAAGCCAGGGTCTTCTGATACCTATCAAGCCATCTCACTTCTTAACCAAATCAAGGCAGATTCGGCATCTTCTTGACAAGGTGCTCACAAAAATCTCTCTATTCTCTGCATTCTTGAAGACGGTATAAGCTTGGGCCTTCTCTGTGTTTGGTCACTACCACCATCGAGTTGAGAAGTGGATATGCACTTCTTGATGTGAAAAATCATGTGTTTTCCTTTATCTTTAGTGCTAGATGAGCCTCCCTTTCTCTTGCCAATGTGTGCCG CTCATCT                                                                                                            ]




>consensus_5331#1
TTTTTTTTTTGTCATCCAACTATAGATAATATAAACATGTATACAGTTCTCAGAAATTAA
TCATATGATCCTATTGCAAGTTTGCAACTTATGAAGTACCATGTACCCGACTTCTAGGAT
TCAGAGATGAAGCTATCAATGATGATTTTAGTCACCCTGCACAACTACGCAAGATAAAAA
GACATGCACAAAAGCTACAATAATAGTAACTCCAGAAAGTCAATGAGCAGAGAGCTGCAG
AGGGTGAGCATTTTGAGTCATTTCTATCGAAGCATGATCATAAGCTATAAGCCAGTGTCT
TCTGATACCTATCAAGCCATCTCGCTTCTTAACCAAATCAAGGCAGATTCGGCATCTTCT
TGACAAGTGCTCACAAAAATCTCTCTATTCTCTGCATTCTTGAAGACGGTATAAGCTTTG
GCCTTCTCTTGTTTTGTCACTACCACCATCGAGTTGAGAATGGATATGCACTTCTTGATT
GAAAAATCATTGTTTTCCTTTTCTTTTGCTAGATGAGCCTCCCCTTCTCTTGCCAATTGT
GCCGCCTCATCTTCAGCTTGTTTGGTTCTCATATCAGGGTACCTTTCCATAAGTCCTTCT
ACGCCAACACTCTTCTTTTGCTTCTTGGGNTCTTTTTCTTCTTTGNTTCTTGCTCCACTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5331#0      TTTTTTTTTTTT------------GATAATATAAACATGTATACAGTTCTCAGAAATTAA 48
consensus_5331#1      TTTTTTTTTTGTCATCCAACTATAGATAATATAAACATGTATACAGTTCTCAGAAATTAA 60
                      ********** *            ************************************

consensus_5331#0      TCATATGATCCTATTGCAAGTTTGCAACTTATGAAGTACCATGTACCCGACTTCTAGGAT 108
consensus_5331#1      TCATATGATCCTATTGCAAGTTTGCAACTTATGAAGTACCATGTACCCGACTTCTAGGAT 120
                      ************************************************************

consensus_5331#0      TCAGAGATGAAGCTATCAATGATGATTTTAGTCACCCTGCACAACTACGCAAGATAAAAA 168
consensus_5331#1      TCAGAGATGAAGCTATCAATGATGATTTTAGTCACCCTGCACAACTACGCAAGATAAAAA 180
                      ************************************************************

consensus_5331#0      GACATGCACAAAAGCTACAACAATAGTAACTCCAGAAAGTCAATGGGCAGAGAGCTGCAA 228
consensus_5331#1      GACATGCACAAAAGCTACAATAATAGTAACTCCAGAAAGTCAATGAGCAGAGAGCTGCAG 240
                      ******************** ************************ ************* 

consensus_5331#0      AGGGTGAGCATTTTGAGTCATTTCTATCGAAGCATGATCATAAGCTATAAGCCAGTGTCT 288
consensus_5331#1      AGGGTGAGCATTTTGAGTCATTTCTATCGAAGCATGATCATAAGCTATAAGCCAGTGTCT 300
                      ************************************************************

consensus_5331#0      TCTGATACCTATCAAGCCATCTCACTTCTTAACCAAATCAAGGCAGATTCGGCATCTTCT 348
consensus_5331#1      TCTGATACCTATCAAGCCATCTCGCTTCTTAACCAAATCAAGGCAGATTCGGCATCTTCT 360
                      *********************** ************************************

consensus_5331#0      TGACAAGTGCTCACAAAAATCTCTCTATTCTCTGCATTCTTGAAGACGGTATAAGCTTTG 408
consensus_5331#1      TGACAAGTGCTCACAAAAATCTCTCTATTCTCTGCATTCTTGAAGACGGTATAAGCTTTG 420
                      ************************************************************

consensus_5331#0      GCCTTCTCTTGTTTTGTCACTACCACCATCGAGTTGAGAATGGATATGCACTTCTTGATT 468
consensus_5331#1      GCCTTCTCTTGTTTTGTCACTACCACCATCGAGTTGAGAATGGATATGCACTTCTTGATT 480
                      ************************************************************

consensus_5331#0      GAAGAATCATTGTTTTCCTTTTCTTTTGCTAGATGAGCCTCCCTTTCTCTTGCCAATTGT 528
consensus_5331#1      GAAAAATCATTGTTTTCCTTTTCTTTTGCTAGATGAGCCTCCCCTTCTCTTGCCAATTGT 540
                      *** *************************************** ****************

consensus_5331#0      GCCGCCTCATCTTCAGCTTGTTTGGTTCTCATATCAAGGTACCTTTCCATAAGTCCTTCT 588
consensus_5331#1      GCCGCCTCATCTTCAGCTTGTTTGGTTCTCATATCAGGGTACCTTTCCATAAGTCCTTCT 600
                      ************************************ ***********************

consensus_5331#0      ACGCCAACACTCTTCTTTTGCTTCTTGGGNTCTTTTTCTTCTTTGGTTCTTGCTCCACTA 648
consensus_5331#1      ACGCCAACACTCTTCTTTTGCTTCTTGGGNTCTTTTTCTTCTTTGNTTCTTGCTCCACTA 660
                      ********************************************* **************

consensus_5331#0      GAACTCAACAAATGTAGTGCAGGGAAAATAAACAACA 685
consensus_5331#1      -------------------------------------