These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5335#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1596 fasta sequence [GCGTTCTGTCGACCGTCTGCGAGCGAATGGCCACGGCTGTGATGGACAGCGAGTTCGGCAGCCTCGTCAAGGTGTCTGCGGCGGTGTGGGCGGCAATGTTCTACGCCCGCCTCGCCGCCGCAAGCCTTCGCCCCGGCGCTCCCCGCCTCGCCGCGCTCCTTCCCGTAGTCGCGCTCTTCTGCGTGGTCCCCTTCTCCTTCTCCACCACCACTTTCCGCGGCTGCTCTGCCTTCTTCCTCAGCTGGCTCGGCGTCTTCAAGCTGCTCCTACTCGCCGCGGGCCGAGGGCCCCTCAACCCCACGCATCCCCTCCACCACTTCGTCTTCTCGGCCTCCCTCCCCGTCAAGCTCCGGCACCTCGCATCCGCCAAGCCGGCCAAAGGTGTAGATCCAGCTCCGGCCAACGAGAGCGCGGCGGGCAAGATCCTCGTCTCCGGCGCCGTCATCCCCCTCATCATCTACACGTACCAGTTCAAGAACGCCATGAGCCGGTACCAGCTCCTCATCCTCTACACCGGGCACATCTACTTCTCCCTGCAGCTCCTCCTGGCCGTCGTCCACGGGCTGATCCATGGCGTGCTCGGGATGGAGATGGAGCCGCAGGTGGACCGGCCGTACCTGGCGTCGTCGCTGCGGAACTTCTGGGGCAGGCGGTGGAACCTCATGGTGCCGGCCATCCTCCGGCCTTCGGTGTACCGCCCGGTGAGGGCGCGTCTCGGCGACGCGGCTGGCGTCCTCGCGGCGTTCCTCGTCTCCGGGCTCATGCACGAGGCGATGTTCTTCTACATCATGTGGCGTCCCCCGAGCGGCGAGGTGACCGTGTTCTTCCTCCTGCACGGCGTGTGCACGGCCGCGGAAGCGTGGTGGGCGCGGCACGCGGGGTGGTGGCGCCCGCCGCGCGCGGCCGCCGTGCCGCTGACTCTGGCGTTCGTGGCCGGGACGGGGTTCTGGCTCTTCTTCCCGGCCATGATCAAGGCTGGCCTGGACGAGATGGTGCTGCACGAGTGCCAGGGCATGGTGGCCGTCATGGAGCAGTCCGGCCGGTGGCTCGCCGGCGCCACCAATCTCACCTTCGCGACACGCTGACCAGAGGAAATGAAAGAATGGGACGTGAGCCACACCATTACTACGATCTGACGAAACCTGTTGCATCGCGACGATTCTGACAGGATGCTGCCGTTTGTGATTTTTTCCGATTTGGGAAATTAAATACTCGAGCCGTTCACATGGCCAGCTTGGACAGCACTGGGTGTTTGCATCGTCTGGGGGTCTGGGCTGTGATGCCAGCTAGAATTATGCTAGATCGATCGTGTTAACAGGGGTTAAAGAAGCATTGATTCGGTTGGAAAATATCTTTACCATTTTTTATTGTACGTTTTCAGCTTTGCTATTTATCAATCCATTTGATTTTTTTTCTTATTATCAGCCACCTACACTATTAGCCCTAGTTTTGAACAACAAAAACCTACTATGTTTTCTTGTATCAATCCCTGAATTAAAAGTTGGTATACACATTTATAGCTAGTAGAAAATTTCAAAATGAATTTAGGCTAAAATAGTTTAATATCTTTACAAGGACCAATAGGGTCTTATCGAA] [+] EMBL AK064156 [GCGTTCTGTCGACCGTCTGCGAGCGAATGGCCACGGCTGTGATGGACAGCGAGTTCGGCAGCCTCGTCAAGGTGTCTGCGGCGGTGTGGGCGGCAATGTTCTACGCCCGCCTCGCCGCCGCAAGCCTTCGCCCCGGCGCTCCCCGCCTCGCCGCGCTCCTTCCCGTAGTCGCGCTCTTCTGCGTGGTCCCCTTCTCCTTCTCCACCACCACTTTCCGCGGCTGCTCTGCCTTCTTCCTCAGCTGGCTCGGCGTCTTCAAGCTGCTCCTACTCGCCGCGGGCCGAGGGCCCCTCAACCCCACGCATCCCCTCCACCACTTCGTCTTCTCGGCCTCCCTCCCCGTCAAGCTCCGGCACCTCGCATCCGCCAAGCCGGCCAAAGGTGTAGATCCAGCTCCGGCCAACGAGAGCGCGGCGGGCAAGATCCTCGTCTCCGGCGCCGTCATCCCCCTCATCATCTACACGTACCAGTTCAAGAACGCCATGAGCCGGTACCAGCTCCTCATCCTCTACACCGGGCACATCTACTTCTCCCTGCAGCTCCTCCTGGCCGTCGTCCACGGGCTGATCCATGGCGTGCTCGGGATGGAGATGGAGCCGCAGGTGGACCGGCCGTACCTGGCGTCGTCGCTGCGGAACTTCTGGGGCAGGCGGTGGAACCTCATGGTGCCGGCCATCCTCCGGCCTTCGGTGTACCGCCCGGTGAGGGCGCGTCTCGGCGACGCGGCTGGCGTCCTCGCGGCGTTCCTCGTCTCCGGGCTCATGCACGAGGCGATGTTCTTCTACATCATGTGGCGTCCCCCGAGCGGCGAGGTGACCGTGTTCTTCCTCCTGCACGGCGTGTGCACGGCCGCGGAAGCGTGGTGGGCGCGGCACGCGGGGTGGTGGCGCCCGCCGCGCGCGGCCGCCGTGCCGCTGACTCTGGCGTTCGTGGCCGGGACGGGGTTCTGGCTCTTCTTCCCGGCCATGATCAAGGCTGGCCTGGACGAGATGGTGCTGCACGAGTGCCAGGGCATGGTGGCCGTCATGGAGCAGTCCGGCCGGTGGCTCGCCGGCGCCACCAATCTCACCTTCGCGACACGCTGACCAGAGGAAATGAAAGAATGGGACGTGAGCCACACCATTACTACGATCTGACGAAACCTGTTGCATCGCGACGATTCTGACAGGATGCTGCCGTTTGTGATTTTTTCCGATTTGGGAAATTAAATACTCGAGCCGTTCACATGGCCAGCTTGGACAGCACTGGGTGTTTGCATCGTCTGGGGGTCTGGGCTGTGATGCCAGCTAGAATTATGCTAGATCGATCGTGTTAACAGGGGTTAAAGAAGCATTGATTCGGTTGGAAAATATCTTTACCATTTTTTATTGTACGTTTTCAGCTTTGCTATTTATCAATCCATTTGATTTTTTTTCTTATTATCAGCCACCTACACTATTAGCCCTAGTTTTGAACAACAAAAACCTACTATGTTTTCTTGTATCAATCCCTGAATTAAAAGTTGGTATACACATTTATAGCTAGTAGAAAATTTCAAAATGAATTTAGGCTAAAATAGTTTAATATCTTTACAAGGACCAATAGGGTCTTATCGAA] [+] EMBL AU173845 [ GTGATGGACAGCGAGTTCGGCAGCCTCGTCAAGGTGTCTGCGGCGGTGTGGGCGGCAATGTTCTACGCCCGCCTCGCCGCCGCAAGCCTTCGCCCCGGCGCTCCCCGCCTCGCCGCGCTCCTTCCCGTAGTCGCGCTCTTCTGCGTGGTCCCCTTCTCCTTCTCCACCACCACTTTCCGCGGCTGCTCTGCCTTCTTCCTCAGCTGGCTCGGCGTCTTCAAGCTGCTCCTACTCGCCGCGGGCCGAGGGCCCCTCAACCCCACGCATCCCCTCCACCACTTCGTCTTCTCGGCCTCCCTCCCCGTCAAGCTCCGGCACCTCGCATCCGCCAAGCCGGCCAAAGGTGTAGATCCAGCTCCGGCCAACGAGAGCGCGGCGGGCAAGATCCTCGTCTCCGGCGCCGTCATCCCCCTCATCATCTACACGTACCAGTTC ] consensusID : consensus_5335#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1249 fasta sequence [CTCCGTTTGTTCAGTGCCCGTCTGAAGCAAGTGGGCGGCGACACCGGCTTGACGGCACGGAGTGGAGCGGAGCTGCGCGCGGCGCGGCCATGGAGCTCCTGCGTGACAGCATCCCCATGGTGTCCCTGGCCTCCTCGGCTGCCGCGCTGTACGCGCGCGTGGCGTCCGCCTTCCTGCGCCCGGGCCTCCCACGCCTCGCCGCGCTGCTCCCCGTGGTCGCGCTCCTCGCCGCGGCGCCCTTGGCCTTCACCTCCTCGGCCATGCTCCGCGGCACCTCCGCCTTCTTCCTCGCGTGGCTCGGCGCCTTCAAGGTCGTCCTCCTCGCCTCCGGCCTGGGCCCGCTCGCAGTCGACGGCCTCCCGGTGCTCTCGTTCCTCTTCACAGCCTTGCTCCCCGTGAAGCTCCGCCGAGGCGGCGGCTGTCCCGGCGCGGCCGCCAAATCGGTGTCCCTCGTTTCTTGCGCGGCCAAGGTCGCCGCCATAGCCACCATCCTCCATCTGTACGAGTCCAAGATCCAGCTGCTGCATCGCTACATACGTCTCGCCATGTACGGGATCCACATCTATTGCTTCTTGGACCTCCTCCTCCCCTGCATCGCGGCCGCCGGATCCGCACTGGGGATGGAGCTGGAGCCGCCGTTCGACCGGCCGTACCTGGCGTCGTCGCTGCGGGACTTCTGGGGCCGGCGGTGGAATCTCATGGTGTCCGCCATCCTCCGGCCGTCGGTGTACGACCCCGTGCGCGCTCGCGCCGGGAAGGCGGCGGGCGTCGTGGCCACGTTCCTCATCTCCGGGCTGATGCACGAGGCCATGGTGTACTACATGACGCTGCGGCTGCCCACCGGCGAGATGACCGCCTTTTTCCTGCTCCACGGCGTGTGCTGCGTGGCGGAGGAGTGGTGCGCGAGGCGGTGGGTGGCGAGGAGATGGCCGCCCCCGCCGCGTCCGCTGGGGTCGCTGCTCGTGATGGCGGTGGCTGCGGGCTCGTCGTTCTGGCTCTTCTTCCCGCCGATTTGCAGGGAGGGGAGCGAGGAGATGCTGCTGGAGGAGTGGGCGGCGGTGGCGGCGTTCTTCCAGGACGCCGGCCGGAAGCTGCGCCGAGCGCCGGTACGGTTCACGGATTAATTAAGGTCGAGTTAAAAAATCAAAAGCTGAATTAAAATTCAGATTTCCAATATAGAAGGAAAGCTTTTTTTTTTTTGAGATGGATAAAACTGTACTAGTAGCAAGACGCCAACCCAATGTGTTTA] [+] EMBL AK108867 [CTCCGTTTGTTCAGTGCCCGTCTGAAGCAAGTGGGCGGCGACACCGGCTTGACGGCACGGAGTGGAGCGGAGCTGCGCGCGGCGCGGCCATGGAGCTCCTGCGTGACAGCATCCCCATGGTGTCCCTGGCCTCCTCGGCTGCCGCGCTGTACGCGCGCGTGGCGTCCGCCTTCCTGCGCCCGGGCCTCCCACGCCTCGCCGCGCTGCTCCCCGTGGTCGCGCTCCTCGCCGCGGCGCCCTTGGCCTTCACCTCCTCGGCCATGCTCCGCGGCACCTCCGCCTTCTTCCTCGCGTGGCTCGGCGCCTTCAAGGTCGTCCTCCTCGCCTCCGGCCTGGGCCCGCTCGCAGTCGACGGCCTCCCGGTGCTCTCGTTCCTCTTCACAGCCTTGCTCCCCGTGAAGCTCCGCCGAGGCGGCGGCTGTCCCGGCGCGGCCGCCAAATCGGTGTCCCTCGTTTCTTGCGCGGCCAAGGTCGCCGCCATAGCCACCATCCTCCATCTGTACGAGTCCAAGATCCAGCTGCTGCATCGCTACATACGTCTCGCCATGTACGGGATCCACATCTATTGCTTCTTGGACCTCCTCCTCCCCTGCATCGCGGCCGCCGGATCCGCACTGGGGATGGAGCTGGAGCCGCCGTTCGACCGGCCGTACCTGGCGTCGTCGCTGCGGGACTTCTGGGGCCGGCGGTGGAATCTCATGGTGTCCGCCATCCTCCGGCCGTCGGTGTACGACCCCGTGCGCGCTCGCGCCGGGAAGGCGGCGGGCGTCGTGGCCACGTTCCTCATCTCCGGGCTGATGCACGAGGCCATGGTGTACTACATGACGCTGCGGCTGCCCACCGGCGAGATGACCGCCTTTTTCCTGCTCCACGGCGTGTGCTGCGTGGCGGAGGAGTGGTGCGCGAGGCGGTGGGTGGCGAGGAGATGGCCGCCCCCGCCGCGTCCGCTGGGGTCGCTGCTCGTGATGGCGGTGGCTGCGGGCTCGTCGTTCTGGCTCTTCTTCCCGCCGATTTGCAGGGAGGGGAGCGAGGAGATGCTGCTGGAGGAGTGGGCGGCGGTGGCGGCGTTCTTCCAGGACGCCGGCCGGAAGCTGCGCCGAGCGCCGGTACGGTTCACGGATTAATTAAGGTCGAGTTAAAAAATCAAAAGCTGAATTAAAATTCAGATTTCCAATATAGAAGGAAAGCTTTTTTTTTTTTGAGATGGATAAAACTGTACTAGTAGCAAGACGCCAACCCAATGTGTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5335#0 -------------------------------------------GCGTTCTGTCGAC-CGT 16 consensus_5335#1 CTCCGTTTGTTCAGTGCCCGTCTGAAGCAAGTGGGCGGCGACACCGGCTTGACGGCACGG 60 ** ** ** * ** consensus_5335#0 CTGCGAGCGAA--TGGCCACGGCT--GTGATGGACAGCGAGTTCGGCAGCCTCGTCAAGG 72 consensus_5335#1 AGTGGAGCGGAGCTGCGCGCGGCGCGGCCATGGAGCTCCTGCGTGACAGCATCCCCATGG 120 ***** * ** * **** * ***** * * * **** ** ** ** consensus_5335#0 TGTCTGCGGCGGTGTGGGCGGCAATGTTCTACGCCCGCCTCGCCGCCGCAAGCCTTCGCC 132 consensus_5335#1 TGTCCCTGGCCTCCTCGGCTGCCGCGCTGTACGCGCGCGTGGCGTCCGCCTTCCTGCGCC 180 **** *** * *** ** * * ***** *** * ** **** *** **** consensus_5335#0 CCGGCGCTCCCCGCCTCGCCGCGCTCCTTCCCGTAGTCGCGCTCTTCTGCGTGGTCCCCT 192 consensus_5335#1 CGGGCCTCCCACGCCTCGCCGCGCTGCTCCCCGTGGTCGCGCTCCTCGCCGCGGCGCCCT 240 * *** ** ************** ** ***** ********* ** ** ** **** consensus_5335#0 TCTCCTTCTCCACC---ACCACTTTCCGCGGCTGCTCTGCCTTCTTCCTCAGCTGGCTCG 249 consensus_5335#1 TGGCCTTCACCTCCTCGGCCATGCTCCGCGGCACCTCCGCCTTCTTCCTCGCGTGGCTCG 300 * ***** ** ** *** ******** *** ************ ******* consensus_5335#0 GCGTCTTCAAGCTGCTCCTACTCGCCGCGGGCCGAGGGCCCCTCA-ACCCCACGCATCCC 308 consensus_5335#1 GCGCCTTCAAGGTCGTCCTCCTCGCCTCCGGCCTGGGCCCGCTCGCAGTCGACGGCCTCC 360 *** ******* * **** ****** * **** ** ** *** * * *** ** consensus_5335#0 C--TCCACCACTTCGTCTTCTCGGCCTCCCTCCCCGTCAAGCTCCGGCACCTCGCATCCG 366 consensus_5335#1 CGGTGCTCTCGTTCCTCTTCACAGCCTTGCTCCCCGTGAAGCTCCGCCGA--GGCGGCGG 418 * * * * *** ***** * **** ******** ******** * ** * * consensus_5335#0 CCAAGCCGGCCAAAGGTGTAGATCCAGCTCCGGCCAACGAGAGCGCGGCGGGCAAGATCC 426 consensus_5335#1 CTGTCCCGGC-GCGGCCGCCAAATCGGTGTCCCTCGTTTCTTGCGCGGC---CAAGGTC- 473 * ***** * * * * * * * ******* **** ** consensus_5335#0 TCGTCTCCGGCGCCGTCATCCCCCTCATCATCTACACGTACCAGTTCAAGAAC--GCCA- 483 consensus_5335#1 -----------GCCGCCATAGCCACCATCCTCCATCTGTACGAGTCCAAGATCCAGCTGC 522 **** *** ** **** ** * **** *** ***** * ** consensus_5335#0 TGAGCCGGTACCAGCTCCTCATCCTCTACACCGGGCACATCTACTTCTCCCTGCAGCTCC 543 consensus_5335#1 TGCATCGCTACATACGTCTCGCCATGTACGGGATCCACATCTATTGCTTCTTGGACCTCC 582 ** ** *** * *** * * *** ******** * ** * ** * **** consensus_5335#0 TCCTGGCCGTCGTCCACGGGCTGATCCATGGCGTGCTCGGGATGGAGATGGAGCCGCAGG 603 consensus_5335#1 TCCTCCCCTGCATCG--CGGCCGCCGGATC-CGCACTGGGGATGGAGCTGGAGCCGCCGT 639 **** ** * ** *** * ** ** ** ********* ********* * consensus_5335#0 TGGACCGGCCGTACCTGGCGTCGTCGCTGCGGAACTTCTGGGGCAGGCGGTGGAACCTCA 663 consensus_5335#1 TCGACCGGCCGTACCTGGCGTCGTCGCTGCGGGACTTCTGGGGCCGGCGGTGGAATCTCA 699 * ****************************** *********** ********** **** consensus_5335#0 TGGTGCCGGCCATCCTCCGGCCTTCGGTGTACCGCCCGGTGAGGGCGCGTCTCGGCGACG 723 consensus_5335#1 TGGTGTCCGCCATCCTCCGGCCGTCGGTGTACGACCCCGTGCGCGCTCGCGCCGGGAAGG 759 ***** * ************** ********* *** *** * ** ** *** * * consensus_5335#0 CGGCTGGCGTCCTCGCGGCGTTCCTCGTCTCCGGGCTCATGCACGAGGCGATGTTCTTCT 783 consensus_5335#1 CGGCGGGCGTCGTGGCCACGTTCCTCATCTCCGGGCTGATGCACGAGGCCATGGTGTACT 819 **** ****** * ** ******** ********** *********** *** * * ** consensus_5335#0 ACATCATGTGGCGTCCCCCGAGCGGCGAGGTGACCGTGTTCTTCCTCCTGCACGGCGTGT 843 consensus_5335#1 ACATGACGCTGCGGCTGCCCACCGGCGAGATGACCGCCTTTTTCCTGCTCCACGGCGTGT 879 **** * * *** * ** * ******* ****** ** ***** ** ********** consensus_5335#0 GCACGGCCGCGGAAGCGTGGTGGGCGCGGCAC------GCGGGGTGGTGGCGCCCGCCGC 897 consensus_5335#1 GCTGCGTGGCGGAGGAGTGGTGCGCGAGGCGGTGGGTGGCGAGGAGATGGCCGCCCCCGC 939 ** * ***** * ****** *** *** *** ** * **** ** **** consensus_5335#0 GCGCGGCCGCCG----TGCCGCTGACTCTGGCGTTCGTGGCCGGGACGGGGTTCTGGCTC 953 consensus_5335#1 -CGCGTCCGCTGGGGTCGCTGCTCGTGATGGCGGTGGCTGCGGGCTCGTCGTTCTGGCTC 998 **** **** * ** *** ***** * * ** ** ** ********** consensus_5335#0 TTCTTCCCGGCCATGATCAAGGCTGGCCTGGACGAGATGGTGCTGCACGAGTGCCAGGGC 1013 consensus_5335#1 TTCTTCCCGCCGATTTGCAGGGAGGGGAGCGAGGAGATGCTGCTGGAGGAGTGGGCGGCG 1058 ********* * ** ** ** ** ** ****** ***** * ***** ** consensus_5335#0 ATGGTGGCCGTCATGGAGCAGTCCGGCCGGTGGCT-CGCCG-GCGCCACCA-ATCTCACC 1070 consensus_5335#1 GTGGCGGCGTTCTTCCAGGACGCCGGCCGGAAGCTGCGCCGAGCGCCGGTACGGTTCACG 1118 *** *** ** * ** * ******** *** ***** ***** * **** consensus_5335#0 TTCGCGACACGCTGACCAGAGGAAATGAAAGAATGGGACGTGAGCCACACCATTACTACG 1130 consensus_5335#1 GATTAATTAAGGTCGAGTTAAAAAATCAAAAGCTGAATTAAAATTCAGA---TTTCCAAT 1175 * * * * **** *** ** * ** * ** * * consensus_5335#0 ATCTGACGAAACCTGTTGCATCGCGACGATTCTGACAGGATGCTGCCGTTTGTGATTTTT 1190 consensus_5335#1 ATAGAAGGAAAGCTTTTTTTTTTTTGAGAT--GGATAAAACTGTACTAGTAGCAAGAC-- 1231 ** * **** ** ** * *** ** * * * * * * * consensus_5335#0 TCCGATTTGGGAAATTAAATACTCGAGCCGTTCACATGGCCAGCTTGGACAGCACTGGGT 1250 consensus_5335#1 GCCAACCCAATGTGTTTA------------------------------------------ 1249 ** * ** * consensus_5335#0 GTTTGCATCGTCTGGGGGTCTGGGCTGTGATGCCAGCTAGAATTATGCTAGATCGATCGT 1310 consensus_5335#1 ------------------------------------------------------------ consensus_5335#0 GTTAACAGGGGTTAAAGAAGCATTGATTCGGTTGGAAAATATCTTTACCATTTTTTATTG 1370 consensus_5335#1 ------------------------------------------------------------ consensus_5335#0 TACGTTTTCAGCTTTGCTATTTATCAATCCATTTGATTTTTTTTCTTATTATCAGCCACC 1430 consensus_5335#1 ------------------------------------------------------------ consensus_5335#0 TACACTATTAGCCCTAGTTTTGAACAACAAAAACCTACTATGTTTTCTTGTATCAATCCC 1490 consensus_5335#1 ------------------------------------------------------------ consensus_5335#0 TGAATTAAAAGTTGGTATACACATTTATAGCTAGTAGAAAATTTCAAAATGAATTTAGGC 1550 consensus_5335#1 ------------------------------------------------------------ consensus_5335#0 TAAAATAGTTTAATATCTTTACAAGGACCAATAGGGTCTTATCGAA 1596 consensus_5335#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||