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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5335#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1596 fasta sequence
[GCGTTCTGTCGACCGTCTGCGAGCGAATGGCCACGGCTGTGATGGACAGCGAGTTCGGCAGCCTCGTCAAGGTGTCTGCGGCGGTGTGGGCGGCAATGTTCTACGCCCGCCTCGCCGCCGCAAGCCTTCGCCCCGGCGCTCCCCGCCTCGCCGCGCTCCTTCCCGTAGTCGCGCTCTTCTGCGTGGTCCCCTTCTCCTTCTCCACCACCACTTTCCGCGGCTGCTCTGCCTTCTTCCTCAGCTGGCTCGGCGTCTTCAAGCTGCTCCTACTCGCCGCGGGCCGAGGGCCCCTCAACCCCACGCATCCCCTCCACCACTTCGTCTTCTCGGCCTCCCTCCCCGTCAAGCTCCGGCACCTCGCATCCGCCAAGCCGGCCAAAGGTGTAGATCCAGCTCCGGCCAACGAGAGCGCGGCGGGCAAGATCCTCGTCTCCGGCGCCGTCATCCCCCTCATCATCTACACGTACCAGTTCAAGAACGCCATGAGCCGGTACCAGCTCCTCATCCTCTACACCGGGCACATCTACTTCTCCCTGCAGCTCCTCCTGGCCGTCGTCCACGGGCTGATCCATGGCGTGCTCGGGATGGAGATGGAGCCGCAGGTGGACCGGCCGTACCTGGCGTCGTCGCTGCGGAACTTCTGGGGCAGGCGGTGGAACCTCATGGTGCCGGCCATCCTCCGGCCTTCGGTGTACCGCCCGGTGAGGGCGCGTCTCGGCGACGCGGCTGGCGTCCTCGCGGCGTTCCTCGTCTCCGGGCTCATGCACGAGGCGATGTTCTTCTACATCATGTGGCGTCCCCCGAGCGGCGAGGTGACCGTGTTCTTCCTCCTGCACGGCGTGTGCACGGCCGCGGAAGCGTGGTGGGCGCGGCACGCGGGGTGGTGGCGCCCGCCGCGCGCGGCCGCCGTGCCGCTGACTCTGGCGTTCGTGGCCGGGACGGGGTTCTGGCTCTTCTTCCCGGCCATGATCAAGGCTGGCCTGGACGAGATGGTGCTGCACGAGTGCCAGGGCATGGTGGCCGTCATGGAGCAGTCCGGCCGGTGGCTCGCCGGCGCCACCAATCTCACCTTCGCGACACGCTGACCAGAGGAAATGAAAGAATGGGACGTGAGCCACACCATTACTACGATCTGACGAAACCTGTTGCATCGCGACGATTCTGACAGGATGCTGCCGTTTGTGATTTTTTCCGATTTGGGAAATTAAATACTCGAGCCGTTCACATGGCCAGCTTGGACAGCACTGGGTGTTTGCATCGTCTGGGGGTCTGGGCTGTGATGCCAGCTAGAATTATGCTAGATCGATCGTGTTAACAGGGGTTAAAGAAGCATTGATTCGGTTGGAAAATATCTTTACCATTTTTTATTGTACGTTTTCAGCTTTGCTATTTATCAATCCATTTGATTTTTTTTCTTATTATCAGCCACCTACACTATTAGCCCTAGTTTTGAACAACAAAAACCTACTATGTTTTCTTGTATCAATCCCTGAATTAAAAGTTGGTATACACATTTATAGCTAGTAGAAAATTTCAAAATGAATTTAGGCTAAAATAGTTTAATATCTTTACAAGGACCAATAGGGTCTTATCGAA]
[+] EMBL AK064156 [GCGTTCTGTCGACCGTCTGCGAGCGAATGGCCACGGCTGTGATGGACAGCGAGTTCGGCAGCCTCGTCAAGGTGTCTGCGGCGGTGTGGGCGGCAATGTTCTACGCCCGCCTCGCCGCCGCAAGCCTTCGCCCCGGCGCTCCCCGCCTCGCCGCGCTCCTTCCCGTAGTCGCGCTCTTCTGCGTGGTCCCCTTCTCCTTCTCCACCACCACTTTCCGCGGCTGCTCTGCCTTCTTCCTCAGCTGGCTCGGCGTCTTCAAGCTGCTCCTACTCGCCGCGGGCCGAGGGCCCCTCAACCCCACGCATCCCCTCCACCACTTCGTCTTCTCGGCCTCCCTCCCCGTCAAGCTCCGGCACCTCGCATCCGCCAAGCCGGCCAAAGGTGTAGATCCAGCTCCGGCCAACGAGAGCGCGGCGGGCAAGATCCTCGTCTCCGGCGCCGTCATCCCCCTCATCATCTACACGTACCAGTTCAAGAACGCCATGAGCCGGTACCAGCTCCTCATCCTCTACACCGGGCACATCTACTTCTCCCTGCAGCTCCTCCTGGCCGTCGTCCACGGGCTGATCCATGGCGTGCTCGGGATGGAGATGGAGCCGCAGGTGGACCGGCCGTACCTGGCGTCGTCGCTGCGGAACTTCTGGGGCAGGCGGTGGAACCTCATGGTGCCGGCCATCCTCCGGCCTTCGGTGTACCGCCCGGTGAGGGCGCGTCTCGGCGACGCGGCTGGCGTCCTCGCGGCGTTCCTCGTCTCCGGGCTCATGCACGAGGCGATGTTCTTCTACATCATGTGGCGTCCCCCGAGCGGCGAGGTGACCGTGTTCTTCCTCCTGCACGGCGTGTGCACGGCCGCGGAAGCGTGGTGGGCGCGGCACGCGGGGTGGTGGCGCCCGCCGCGCGCGGCCGCCGTGCCGCTGACTCTGGCGTTCGTGGCCGGGACGGGGTTCTGGCTCTTCTTCCCGGCCATGATCAAGGCTGGCCTGGACGAGATGGTGCTGCACGAGTGCCAGGGCATGGTGGCCGTCATGGAGCAGTCCGGCCGGTGGCTCGCCGGCGCCACCAATCTCACCTTCGCGACACGCTGACCAGAGGAAATGAAAGAATGGGACGTGAGCCACACCATTACTACGATCTGACGAAACCTGTTGCATCGCGACGATTCTGACAGGATGCTGCCGTTTGTGATTTTTTCCGATTTGGGAAATTAAATACTCGAGCCGTTCACATGGCCAGCTTGGACAGCACTGGGTGTTTGCATCGTCTGGGGGTCTGGGCTGTGATGCCAGCTAGAATTATGCTAGATCGATCGTGTTAACAGGGGTTAAAGAAGCATTGATTCGGTTGGAAAATATCTTTACCATTTTTTATTGTACGTTTTCAGCTTTGCTATTTATCAATCCATTTGATTTTTTTTCTTATTATCAGCCACCTACACTATTAGCCCTAGTTTTGAACAACAAAAACCTACTATGTTTTCTTGTATCAATCCCTGAATTAAAAGTTGGTATACACATTTATAGCTAGTAGAAAATTTCAAAATGAATTTAGGCTAAAATAGTTTAATATCTTTACAAGGACCAATAGGGTCTTATCGAA]
[+] EMBL AU173845 [ GTGATGGACAGCGAGTTCGGCAGCCTCGTCAAGGTGTCTGCGGCGGTGTGGGCGGCAATGTTCTACGCCCGCCTCGCCGCCGCAAGCCTTCGCCCCGGCGCTCCCCGCCTCGCCGCGCTCCTTCCCGTAGTCGCGCTCTTCTGCGTGGTCCCCTTCTCCTTCTCCACCACCACTTTCCGCGGCTGCTCTGCCTTCTTCCTCAGCTGGCTCGGCGTCTTCAAGCTGCTCCTACTCGCCGCGGGCCGAGGGCCCCTCAACCCCACGCATCCCCTCCACCACTTCGTCTTCTCGGCCTCCCTCCCCGTCAAGCTCCGGCACCTCGCATCCGCCAAGCCGGCCAAAGGTGTAGATCCAGCTCCGGCCAACGAGAGCGCGGCGGGCAAGATCCTCGTCTCCGGCGCCGTCATCCCCCTCATCATCTACACGTACCAGTTC ]
consensusID : consensus_5335#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1249 fasta sequence
[CTCCGTTTGTTCAGTGCCCGTCTGAAGCAAGTGGGCGGCGACACCGGCTTGACGGCACGGAGTGGAGCGGAGCTGCGCGCGGCGCGGCCATGGAGCTCCTGCGTGACAGCATCCCCATGGTGTCCCTGGCCTCCTCGGCTGCCGCGCTGTACGCGCGCGTGGCGTCCGCCTTCCTGCGCCCGGGCCTCCCACGCCTCGCCGCGCTGCTCCCCGTGGTCGCGCTCCTCGCCGCGGCGCCCTTGGCCTTCACCTCCTCGGCCATGCTCCGCGGCACCTCCGCCTTCTTCCTCGCGTGGCTCGGCGCCTTCAAGGTCGTCCTCCTCGCCTCCGGCCTGGGCCCGCTCGCAGTCGACGGCCTCCCGGTGCTCTCGTTCCTCTTCACAGCCTTGCTCCCCGTGAAGCTCCGCCGAGGCGGCGGCTGTCCCGGCGCGGCCGCCAAATCGGTGTCCCTCGTTTCTTGCGCGGCCAAGGTCGCCGCCATAGCCACCATCCTCCATCTGTACGAGTCCAAGATCCAGCTGCTGCATCGCTACATACGTCTCGCCATGTACGGGATCCACATCTATTGCTTCTTGGACCTCCTCCTCCCCTGCATCGCGGCCGCCGGATCCGCACTGGGGATGGAGCTGGAGCCGCCGTTCGACCGGCCGTACCTGGCGTCGTCGCTGCGGGACTTCTGGGGCCGGCGGTGGAATCTCATGGTGTCCGCCATCCTCCGGCCGTCGGTGTACGACCCCGTGCGCGCTCGCGCCGGGAAGGCGGCGGGCGTCGTGGCCACGTTCCTCATCTCCGGGCTGATGCACGAGGCCATGGTGTACTACATGACGCTGCGGCTGCCCACCGGCGAGATGACCGCCTTTTTCCTGCTCCACGGCGTGTGCTGCGTGGCGGAGGAGTGGTGCGCGAGGCGGTGGGTGGCGAGGAGATGGCCGCCCCCGCCGCGTCCGCTGGGGTCGCTGCTCGTGATGGCGGTGGCTGCGGGCTCGTCGTTCTGGCTCTTCTTCCCGCCGATTTGCAGGGAGGGGAGCGAGGAGATGCTGCTGGAGGAGTGGGCGGCGGTGGCGGCGTTCTTCCAGGACGCCGGCCGGAAGCTGCGCCGAGCGCCGGTACGGTTCACGGATTAATTAAGGTCGAGTTAAAAAATCAAAAGCTGAATTAAAATTCAGATTTCCAATATAGAAGGAAAGCTTTTTTTTTTTTGAGATGGATAAAACTGTACTAGTAGCAAGACGCCAACCCAATGTGTTTA]
[+] EMBL AK108867 [CTCCGTTTGTTCAGTGCCCGTCTGAAGCAAGTGGGCGGCGACACCGGCTTGACGGCACGGAGTGGAGCGGAGCTGCGCGCGGCGCGGCCATGGAGCTCCTGCGTGACAGCATCCCCATGGTGTCCCTGGCCTCCTCGGCTGCCGCGCTGTACGCGCGCGTGGCGTCCGCCTTCCTGCGCCCGGGCCTCCCACGCCTCGCCGCGCTGCTCCCCGTGGTCGCGCTCCTCGCCGCGGCGCCCTTGGCCTTCACCTCCTCGGCCATGCTCCGCGGCACCTCCGCCTTCTTCCTCGCGTGGCTCGGCGCCTTCAAGGTCGTCCTCCTCGCCTCCGGCCTGGGCCCGCTCGCAGTCGACGGCCTCCCGGTGCTCTCGTTCCTCTTCACAGCCTTGCTCCCCGTGAAGCTCCGCCGAGGCGGCGGCTGTCCCGGCGCGGCCGCCAAATCGGTGTCCCTCGTTTCTTGCGCGGCCAAGGTCGCCGCCATAGCCACCATCCTCCATCTGTACGAGTCCAAGATCCAGCTGCTGCATCGCTACATACGTCTCGCCATGTACGGGATCCACATCTATTGCTTCTTGGACCTCCTCCTCCCCTGCATCGCGGCCGCCGGATCCGCACTGGGGATGGAGCTGGAGCCGCCGTTCGACCGGCCGTACCTGGCGTCGTCGCTGCGGGACTTCTGGGGCCGGCGGTGGAATCTCATGGTGTCCGCCATCCTCCGGCCGTCGGTGTACGACCCCGTGCGCGCTCGCGCCGGGAAGGCGGCGGGCGTCGTGGCCACGTTCCTCATCTCCGGGCTGATGCACGAGGCCATGGTGTACTACATGACGCTGCGGCTGCCCACCGGCGAGATGACCGCCTTTTTCCTGCTCCACGGCGTGTGCTGCGTGGCGGAGGAGTGGTGCGCGAGGCGGTGGGTGGCGAGGAGATGGCCGCCCCCGCCGCGTCCGCTGGGGTCGCTGCTCGTGATGGCGGTGGCTGCGGGCTCGTCGTTCTGGCTCTTCTTCCCGCCGATTTGCAGGGAGGGGAGCGAGGAGATGCTGCTGGAGGAGTGGGCGGCGGTGGCGGCGTTCTTCCAGGACGCCGGCCGGAAGCTGCGCCGAGCGCCGGTACGGTTCACGGATTAATTAAGGTCGAGTTAAAAAATCAAAAGCTGAATTAAAATTCAGATTTCCAATATAGAAGGAAAGCTTTTTTTTTTTTGAGATGGATAAAACTGTACTAGTAGCAAGACGCCAACCCAATGTGTTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5335#0 -------------------------------------------GCGTTCTGTCGAC-CGT 16
consensus_5335#1 CTCCGTTTGTTCAGTGCCCGTCTGAAGCAAGTGGGCGGCGACACCGGCTTGACGGCACGG 60
** ** ** * **
consensus_5335#0 CTGCGAGCGAA--TGGCCACGGCT--GTGATGGACAGCGAGTTCGGCAGCCTCGTCAAGG 72
consensus_5335#1 AGTGGAGCGGAGCTGCGCGCGGCGCGGCCATGGAGCTCCTGCGTGACAGCATCCCCATGG 120
***** * ** * **** * ***** * * * **** ** ** **
consensus_5335#0 TGTCTGCGGCGGTGTGGGCGGCAATGTTCTACGCCCGCCTCGCCGCCGCAAGCCTTCGCC 132
consensus_5335#1 TGTCCCTGGCCTCCTCGGCTGCCGCGCTGTACGCGCGCGTGGCGTCCGCCTTCCTGCGCC 180
**** *** * *** ** * * ***** *** * ** **** *** ****
consensus_5335#0 CCGGCGCTCCCCGCCTCGCCGCGCTCCTTCCCGTAGTCGCGCTCTTCTGCGTGGTCCCCT 192
consensus_5335#1 CGGGCCTCCCACGCCTCGCCGCGCTGCTCCCCGTGGTCGCGCTCCTCGCCGCGGCGCCCT 240
* *** ** ************** ** ***** ********* ** ** ** ****
consensus_5335#0 TCTCCTTCTCCACC---ACCACTTTCCGCGGCTGCTCTGCCTTCTTCCTCAGCTGGCTCG 249
consensus_5335#1 TGGCCTTCACCTCCTCGGCCATGCTCCGCGGCACCTCCGCCTTCTTCCTCGCGTGGCTCG 300
* ***** ** ** *** ******** *** ************ *******
consensus_5335#0 GCGTCTTCAAGCTGCTCCTACTCGCCGCGGGCCGAGGGCCCCTCA-ACCCCACGCATCCC 308
consensus_5335#1 GCGCCTTCAAGGTCGTCCTCCTCGCCTCCGGCCTGGGCCCGCTCGCAGTCGACGGCCTCC 360
*** ******* * **** ****** * **** ** ** *** * * *** **
consensus_5335#0 C--TCCACCACTTCGTCTTCTCGGCCTCCCTCCCCGTCAAGCTCCGGCACCTCGCATCCG 366
consensus_5335#1 CGGTGCTCTCGTTCCTCTTCACAGCCTTGCTCCCCGTGAAGCTCCGCCGA--GGCGGCGG 418
* * * * *** ***** * **** ******** ******** * ** * *
consensus_5335#0 CCAAGCCGGCCAAAGGTGTAGATCCAGCTCCGGCCAACGAGAGCGCGGCGGGCAAGATCC 426
consensus_5335#1 CTGTCCCGGC-GCGGCCGCCAAATCGGTGTCCCTCGTTTCTTGCGCGGC---CAAGGTC- 473
* ***** * * * * * * * ******* **** **
consensus_5335#0 TCGTCTCCGGCGCCGTCATCCCCCTCATCATCTACACGTACCAGTTCAAGAAC--GCCA- 483
consensus_5335#1 -----------GCCGCCATAGCCACCATCCTCCATCTGTACGAGTCCAAGATCCAGCTGC 522
**** *** ** **** ** * **** *** ***** * **
consensus_5335#0 TGAGCCGGTACCAGCTCCTCATCCTCTACACCGGGCACATCTACTTCTCCCTGCAGCTCC 543
consensus_5335#1 TGCATCGCTACATACGTCTCGCCATGTACGGGATCCACATCTATTGCTTCTTGGACCTCC 582
** ** *** * *** * * *** ******** * ** * ** * ****
consensus_5335#0 TCCTGGCCGTCGTCCACGGGCTGATCCATGGCGTGCTCGGGATGGAGATGGAGCCGCAGG 603
consensus_5335#1 TCCTCCCCTGCATCG--CGGCCGCCGGATC-CGCACTGGGGATGGAGCTGGAGCCGCCGT 639
**** ** * ** *** * ** ** ** ********* ********* *
consensus_5335#0 TGGACCGGCCGTACCTGGCGTCGTCGCTGCGGAACTTCTGGGGCAGGCGGTGGAACCTCA 663
consensus_5335#1 TCGACCGGCCGTACCTGGCGTCGTCGCTGCGGGACTTCTGGGGCCGGCGGTGGAATCTCA 699
* ****************************** *********** ********** ****
consensus_5335#0 TGGTGCCGGCCATCCTCCGGCCTTCGGTGTACCGCCCGGTGAGGGCGCGTCTCGGCGACG 723
consensus_5335#1 TGGTGTCCGCCATCCTCCGGCCGTCGGTGTACGACCCCGTGCGCGCTCGCGCCGGGAAGG 759
***** * ************** ********* *** *** * ** ** *** * *
consensus_5335#0 CGGCTGGCGTCCTCGCGGCGTTCCTCGTCTCCGGGCTCATGCACGAGGCGATGTTCTTCT 783
consensus_5335#1 CGGCGGGCGTCGTGGCCACGTTCCTCATCTCCGGGCTGATGCACGAGGCCATGGTGTACT 819
**** ****** * ** ******** ********** *********** *** * * **
consensus_5335#0 ACATCATGTGGCGTCCCCCGAGCGGCGAGGTGACCGTGTTCTTCCTCCTGCACGGCGTGT 843
consensus_5335#1 ACATGACGCTGCGGCTGCCCACCGGCGAGATGACCGCCTTTTTCCTGCTCCACGGCGTGT 879
**** * * *** * ** * ******* ****** ** ***** ** **********
consensus_5335#0 GCACGGCCGCGGAAGCGTGGTGGGCGCGGCAC------GCGGGGTGGTGGCGCCCGCCGC 897
consensus_5335#1 GCTGCGTGGCGGAGGAGTGGTGCGCGAGGCGGTGGGTGGCGAGGAGATGGCCGCCCCCGC 939
** * ***** * ****** *** *** *** ** * **** ** ****
consensus_5335#0 GCGCGGCCGCCG----TGCCGCTGACTCTGGCGTTCGTGGCCGGGACGGGGTTCTGGCTC 953
consensus_5335#1 -CGCGTCCGCTGGGGTCGCTGCTCGTGATGGCGGTGGCTGCGGGCTCGTCGTTCTGGCTC 998
**** **** * ** *** ***** * * ** ** ** **********
consensus_5335#0 TTCTTCCCGGCCATGATCAAGGCTGGCCTGGACGAGATGGTGCTGCACGAGTGCCAGGGC 1013
consensus_5335#1 TTCTTCCCGCCGATTTGCAGGGAGGGGAGCGAGGAGATGCTGCTGGAGGAGTGGGCGGCG 1058
********* * ** ** ** ** ** ****** ***** * ***** **
consensus_5335#0 ATGGTGGCCGTCATGGAGCAGTCCGGCCGGTGGCT-CGCCG-GCGCCACCA-ATCTCACC 1070
consensus_5335#1 GTGGCGGCGTTCTTCCAGGACGCCGGCCGGAAGCTGCGCCGAGCGCCGGTACGGTTCACG 1118
*** *** ** * ** * ******** *** ***** ***** * ****
consensus_5335#0 TTCGCGACACGCTGACCAGAGGAAATGAAAGAATGGGACGTGAGCCACACCATTACTACG 1130
consensus_5335#1 GATTAATTAAGGTCGAGTTAAAAAATCAAAAGCTGAATTAAAATTCAGA---TTTCCAAT 1175
* * * * **** *** ** * ** * ** * *
consensus_5335#0 ATCTGACGAAACCTGTTGCATCGCGACGATTCTGACAGGATGCTGCCGTTTGTGATTTTT 1190
consensus_5335#1 ATAGAAGGAAAGCTTTTTTTTTTTTGAGAT--GGATAAAACTGTACTAGTAGCAAGAC-- 1231
** * **** ** ** * *** ** * * * * * * *
consensus_5335#0 TCCGATTTGGGAAATTAAATACTCGAGCCGTTCACATGGCCAGCTTGGACAGCACTGGGT 1250
consensus_5335#1 GCCAACCCAATGTGTTTA------------------------------------------ 1249
** * ** *
consensus_5335#0 GTTTGCATCGTCTGGGGGTCTGGGCTGTGATGCCAGCTAGAATTATGCTAGATCGATCGT 1310
consensus_5335#1 ------------------------------------------------------------
consensus_5335#0 GTTAACAGGGGTTAAAGAAGCATTGATTCGGTTGGAAAATATCTTTACCATTTTTTATTG 1370
consensus_5335#1 ------------------------------------------------------------
consensus_5335#0 TACGTTTTCAGCTTTGCTATTTATCAATCCATTTGATTTTTTTTCTTATTATCAGCCACC 1430
consensus_5335#1 ------------------------------------------------------------
consensus_5335#0 TACACTATTAGCCCTAGTTTTGAACAACAAAAACCTACTATGTTTTCTTGTATCAATCCC 1490
consensus_5335#1 ------------------------------------------------------------
consensus_5335#0 TGAATTAAAAGTTGGTATACACATTTATAGCTAGTAGAAAATTTCAAAATGAATTTAGGC 1550
consensus_5335#1 ------------------------------------------------------------
consensus_5335#0 TAAAATAGTTTAATATCTTTACAAGGACCAATAGGGTCTTATCGAA 1596
consensus_5335#1 ----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||