cluster # 5336

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Oryza sativa
cluster # 5336 cluster # 5336 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5336#0 length = 721 sequences # 2

consensus_5336#1 length = 380 sequences # 1

consensusID : consensus_5336#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 721
fasta sequence

                              [TAATATTCCCTTGAACAATTGATACCTAACCACTAGAGGGAAATCCAGAAATGAGGAGACAAACACCCTGAACAGTAATGCACTTGTCAACAGACCATTCCTACTTCACAATCATATTTCATTTTCCATAAAAAATATTTCCTAAAAGAAAAAGGTCTTAAATTCAGTATGTAACAAGGACTCACCATGAAAAATTGTGTTAGCAAAATGATCATTACGAAGTGACATATACCTAGCTATAAAGCCCCCAAAACAACTCATATAAGGGAGCACAAAGTTGTCCCCAAACTAGCCTCAAGTCATC-TATCATCGATCTTGACATTATTCAGAGCCAACATC-AACACCTTTCTTTGATAGGAATTCCTTTGCCT-CCAAGATATCCTGCTGTAGTAGTACAGCTTCTTGCGGGCAAGTTGGGAAGAACATAAGCCCAAATCCAACCATAAAAAGGCCATAGCATCCAAGTGCCACTACCAAGTAGATGGGAAGCAACCAAGTATAACTTCGAGGAACAGTCGCGGTTTCAAGAAGGGCAATCCAAATAGCTGAGACTGCCACCAGCATAGCAATTATCTTGAATATGTGCTTCATTTGGGAAACCAAGTGTTTTCAGGATCCCCTCCCCTC-CCGCGCCCTGCTCTGCTCGCCAATGGAGATCGGCGCCCCTCCCCTGTTCAGCCCCGAGATGGCGCAAGGAGCGGAGGCGGCGACGACGAGACGG]

[+] EMBL CB652609             [TAATATTCCCTTGAACAATTGATACCTAACCACTAGAGGGAAATCCAGAAATGAGGAGACAAACACCCTGAACAGTAATGCACTTGTCAACAGACCATTCCTACTTCACAATCATATTTCATTTTCCATAAAAAATATTTCCTAAAAGAAAAAGGTCTTAAATTCAGTATGTAACAAGGACTCACCATGAAAAATTGTGTTAGCAAAATGATCATTACGAAGTGACATATACCTAGCTATAAAGCCCCCAAAACAACTCATATAAGGGAGCACAAAGTTGTCCCCAAACTAGCCTCAAGTCATC TATCATCGATCTTGACATTATTCAGAGCCAACATC AACACCTTTCTTTGATAGGAATTCCTTTGCCT CCAAGATATCCTGCTGTAGTAGTACAGCTTCTTGCGGGCAAGTTGGGAAGAACATAAGCCCAAATCCAACCATAAAAAGGCCATAGCATCCAAGTGCCACTACCAAGTAGATGGGAAGCAACCAAGTATAACTTCGAGGAACAGTCGCGGTTTCAAGAAGGGCAATCCAAATAGCTGAGACTGCCACCAGCATAGCAATTATCTTGAATATGTGCTTCATTTGGGAAACCAAGTGTTTTCAGGATCCCCTCCCCTC CCGCGCCCTGCTCTGCTCGCCAATGGAGATCGGCGCCCCTCCCCTGTTCAGCCCCGA                                     ]
[-] EMBL C73662               [                                                                                                                                                                                                                                                                                                             ATCTTATCATCGATCTTGACATTATTCAGAGCCAACATCNAACACCTTTCTTTGATAGNANTTCCTTTGCCTCCCAAGATATCCTGCTGTAGTAGTACAGCTTCTTGCGGGCAAGTTGGGAAGAACATAAGCCCAAATCCAACCATAAAAAGGCCATAGCATCCAAGTGCCACTACCAAGTAGATGGGAAGCAACCAAGTATAACTTCGAGGAACAGTCGCGGTTTCAAGAAGGGCAATCCAAATAGCTGAGACTGCCACCAGCATAGCAATTATCTTGAATATGTGCTTCATTTGGGAAACCAAGTGTTTTCAGGATCCCCTCCCCTCNCCGCGCCCT NTCTGCTCGCNAATGGAGATCGGCGCCCCTCCCCTGTTCAGCCGCGAGATGGCGCAAGGAGCGGAGGCGGCGACGACGAGACGG]




>consensus_5336#0
TAATATTCCCTTGAACAATTGATACCTAACCACTAGAGGGAAATCCAGAAATGAGGAGAC
AAACACCCTGAACAGTAATGCACTTGTCAACAGACCATTCCTACTTCACAATCATATTTC
ATTTTCCATAAAAAATATTTCCTAAAAGAAAAAGGTCTTAAATTCAGTATGTAACAAGGA
CTCACCATGAAAAATTGTGTTAGCAAAATGATCATTACGAAGTGACATATACCTAGCTAT
AAAGCCCCCAAAACAACTCATATAAGGGAGCACAAAGTTGTCCCCAAACTAGCCTCAAGT
CATCTATCATCGATCTTGACATTATTCAGAGCCAACATCAACACCTTTCTTTGATAGGAA
TTCCTTTGCCTCCAAGATATCCTGCTGTAGTAGTACAGCTTCTTGCGGGCAAGTTGGGAA
GAACATAAGCCCAAATCCAACCATAAAAAGGCCATAGCATCCAAGTGCCACTACCAAGTA
GATGGGAAGCAACCAAGTATAACTTCGAGGAACAGTCGCGGTTTCAAGAAGGGCAATCCA
AATAGCTGAGACTGCCACCAGCATAGCAATTATCTTGAATATGTGCTTCATTTGGGAAAC
CAAGTGTTTTCAGGATCCCCTCCCCTCCCGCGCCCTGCTCTGCTCGCCAATGGAGATCGG
CGCCCCTCCCCTGTTCAGCCCCGAGATGGCGCAAGGAGCGGAGGCGGCGACGACGAGACG
G

consensusID : consensus_5336#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 380
fasta sequence

                              [TTTTTTTTTTTTTTTTTCATTTNCCATAAAAAATATTTCCTAAAANAAAAAGGTCTTAAATTCAGTNTGTAACANGGACTCACCATGAAAAATTGTGTTAGCAAAATGATCATTACGAAGTGACATATNCCTAGCTATAAAGCCCCCAAAACAACTCATATAAGGGAGCACAAAGTTGNCCCCAAACTAGCCTNAAGTCATNTATNATCGATCTTGACATTATTCANAGCCAACATCAACACCTTTNTTTGATAGGAATTCCTTTGCCTCCAANATATCCTGCTGTAGTAGTACAGCTTNTTGCGGGCAAGTTGGGAAGAACATAANCCCAAATCCAACCATAAAAAGGCCATAGCATCCAAGTGCCACTACCAAGTAGA]

[-] EMBL AU172742             [TTTTTTTTTTTTTTTTTCATTTNCCATAAAAAATATTTCCTAAAANAAAAAGGTCTTAAATTCAGTNTGTAACANGGACTCACCATGAAAAATTGTGTTAGCAAAATGATCATTACGAAGTGACATATNCCTAGCTATAAAGCCCCCAAAACAACTCATATAAGGGAGCACAAAGTTGNCCCCAAACTAGCCTNAAGTCATNTATNATCGATCTTGACATTATTCANAGCCAACATCAACACCTTTNTTTGATAGGAATTCCTTTGCCTCCAANATATCCTGCTGTAGTAGTACAGCTTNTTGCGGGCAAGTTGGGAAGAACATAANCCCAAATCCAACCATAAAAAGGCCATAGCATCCAAGTGCCACTACCAAGTAGA]




>consensus_5336#1
TTTTTTTTTTTTTTTTTCATTTNCCATAAAAAATATTTCCTAAAANAAAAAGGTCTTAAA
TTCAGTNTGTAACANGGACTCACCATGAAAAATTGTGTTAGCAAAATGATCATTACGAAG
TGACATATNCCTAGCTATAAAGCCCCCAAAACAACTCATATAAGGGAGCACAAAGTTGNC
CCCAAACTAGCCTNAAGTCATNTATNATCGATCTTGACATTATTCANAGCCAACATCAAC
ACCTTTNTTTGATAGGAATTCCTTTGCCTCCAANATATCCTGCTGTAGTAGTACAGCTTN
TTGCGGGCAAGTTGGGAAGAACATAANCCCAAATCCAACCATAAAAAGGCCATAGCATCC
AAGTGCCACTACCAAGTAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5336#0      TAATATTCCCTTGAACAATTGATACCTAACCACTAGAGGGAAATCCAGAAATGAGGAGAC 60
consensus_5336#1      ------------------------------------------------------------
                                                                                  

consensus_5336#0      AAACACCCTGAACAGTAATGCACTTGTCAACAGACCATTCCTACTTCACAATCATATTTC 120
consensus_5336#1      ------------------------------------------TTTTTTTTTTTTTTTTTC 18
                                                                  **     *  * ****

consensus_5336#0      ATTTTCCATAAAAAATATTTCCTAAAAGAAAAAGGTCTTAAATTCAGTATGTAACAAGGA 180
consensus_5336#1      ATTTNCCATAAAAAATATTTCCTAAAANAAAAAGGTCTTAAATTCAGTNTGTAACANGGA 78
                      **** ********************** ******************** ******* ***

consensus_5336#0      CTCACCATGAAAAATTGTGTTAGCAAAATGATCATTACGAAGTGACATATACCTAGCTAT 240
consensus_5336#1      CTCACCATGAAAAATTGTGTTAGCAAAATGATCATTACGAAGTGACATATNCCTAGCTAT 138
                      ************************************************** *********

consensus_5336#0      AAAGCCCCCAAAACAACTCATATAAGGGAGCACAAAGTTGTCCCCAAACTAGCCTCAAGT 300
consensus_5336#1      AAAGCCCCCAAAACAACTCATATAAGGGAGCACAAAGTTGNCCCCAAACTAGCCTNAAGT 198
                      **************************************** ************** ****

consensus_5336#0      CATCTATCATCGATCTTGACATTATTCAGAGCCAACATCAACACCTTTCTTTGATAGGAA 360
consensus_5336#1      CATNTATNATCGATCTTGACATTATTCANAGCCAACATCAACACCTTTNTTTGATAGGAA 258
                      *** *** ******************** ******************* ***********

consensus_5336#0      TTCCTTTGCCTCCAAGATATCCTGCTGTAGTAGTACAGCTTCTTGCGGGCAAGTTGGGAA 420
consensus_5336#1      TTCCTTTGCCTCCAANATATCCTGCTGTAGTAGTACAGCTTNTTGCGGGCAAGTTGGGAA 318
                      *************** ************************* ******************

consensus_5336#0      GAACATAAGCCCAAATCCAACCATAAAAAGGCCATAGCATCCAAGTGCCACTACCAAGTA 480
consensus_5336#1      GAACATAANCCCAAATCCAACCATAAAAAGGCCATAGCATCCAAGTGCCACTACCAAGTA 378
                      ******** ***************************************************

consensus_5336#0      GATGGGAAGCAACCAAGTATAACTTCGAGGAACAGTCGCGGTTTCAAGAAGGGCAATCCA 540
consensus_5336#1      GA---------------------------------------------------------- 380
                      **                                                          

consensus_5336#0      AATAGCTGAGACTGCCACCAGCATAGCAATTATCTTGAATATGTGCTTCATTTGGGAAAC 600
consensus_5336#1      ------------------------------------------------------------
                                                                                  

consensus_5336#0      CAAGTGTTTTCAGGATCCCCTCCCCTCCCGCGCCCTGCTCTGCTCGCCAATGGAGATCGG 660
consensus_5336#1      ------------------------------------------------------------
                                                                                  

consensus_5336#0      CGCCCCTCCCCTGTTCAGCCCCGAGATGGCGCAAGGAGCGGAGGCGGCGACGACGAGACG 720
consensus_5336#1      ------------------------------------------------------------
                                                                                  

consensus_5336#0      G 721
consensus_5336#1      -