cluster # 5341

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Oryza sativa
cluster # 5341 cluster # 5341 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5341#0 length = 657 sequences # 2

consensus_5341#1 length = 285 sequences # 1

consensusID : consensus_5341#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 657
fasta sequence

                              [GTAACACCAAAAATTTATTAAATACGAATGACGTAACACCAAAAATTTTATAATAGTAGAGATTTAGACAAACCTGTTAAACTGGTAAAAAGGTCAGCTCGACCCAGCTCGACCCAACTGTGACGTCGACCATTTAATACTGGAAAAAGTACACCGAAGGTCCCTCAACTTGTCATCGAGTTACAAGATCGTCCCCTAACCGCAAAACACCGGATGTAGCGCATCCTTCATCTTATAAAACCAGTGCAAAGTAGGTCCCTCGGCGATTTTGACTCCAGTTTTGTCCACGTGGCAGCTGACTCACGGTGGGACCCACGTGGCCCCCACCCGTCAGCCTCTTCATCCCCTCCCCTCTCTCCGATCCTCTCCTCTCTCATCCCCTCTCTTCTCTCTCATCCCACCCGTGGAGCGGCGGCGCATGGAGCCGGCAGGATGGAGCGGGGCGGCGGCGGGCGGAGTGGGCCGATGATGAGGTAAACCGGTGGTGGGCGGAAAGGGGCGACGGCGAGGTAAACCGGCGGCGGGTGGAGAAGGCGAAAAGGGAGATGGCGGTGGAGACAACGGTGGCGCGATGGAAGGCATCAAAGGAGATGGGGAGCGCACTCCACGCCGTCGTGTCTCGTCGTCGCTGCTCCAAACACTGCTCCTCGTCCCCTC]

[+] EMBL CB642644             [GTAACACCAAAAATTTATTAAATACGAATGACGTAACACCAAAAATTTTATAATAGTAGAGATTTAGACAAACCTGTTAAACTGGTAAAAAGGTCAGCTCGACCCAGCTCGACCCAACTGTGACGTCGACCATTTAATACTGGAAAAAGTACACCGAAGGTCCCTCAACTTGTCATCGAGTTACAAGATCGTCCCCTAACCGCAAAACACCGGATGTAGCGCATCCTTCATCTTATAAAACCAGTGCAAAGTAGGTCCCTCGGCGATTTTGACTCCAGTTTTGTCCACGTGGCAGCTGACTCACGGTGGGACCCACGTGGCCCCCACCCGTCAGCCTCTTCATCCCCTCCCCTCTCTCCGATCCTCTCCTCTCTCATCCCCTCTCTTCTCTCTCATCCCACCCGTGGAGCGGCGGCGCATGGAGCCGGCAGGATGGAGCGGGGCGGCGGCGGGCGGAGTGGGCCGATGATGAGGTAAACCGGTGGTGGGCGGAAAGGGGCGACGGCGAGGTAAACCGGCGGCGGGTGGAGAAGGCGAAAAGGGAGATGGCGGTGGAGACAACGGTGGCGCGATGGAAGGCATCAAAGGAGATGGGGAGCGCACTCCACGCCGTCGTGTCTCGTCGTCGCTGCTCCAAACACTGCTCCTCGTCCCCTC]
[-] EMBL AU070980             [                                                                                                                                                                                                                                           TAAAACCAGTGCAAAGTAGGTCCCTCGGCGATTTTGACTCCAGTTTTGTCCACGTGGCAGCTGACTCACGGTGGGACCCACGTGGCCCCCACCCGTCAGCCTCTTCATCCCCTCCCCTCTCTCCGATCCTCTCCTCTCTCATCCCCTCTCTTCTCTCTCATCCCACCCGTGGAGCGGCGGCGNATGGAGCCGGNAGGATGGNGCGGGGCGGCGGCGGGCGGNGTGGGCCGATGATGAGGTAGACCGGTGGTGGGCGGAGAGGGGCGACGGCGAGGTAGACCGGCGGCGGGTGGAGAAGGCGAAAAGGGAGATGGCGGTGGAGACAACGGCGG                                                                                          ]




>consensus_5341#0
GTAACACCAAAAATTTATTAAATACGAATGACGTAACACCAAAAATTTTATAATAGTAGA
GATTTAGACAAACCTGTTAAACTGGTAAAAAGGTCAGCTCGACCCAGCTCGACCCAACTG
TGACGTCGACCATTTAATACTGGAAAAAGTACACCGAAGGTCCCTCAACTTGTCATCGAG
TTACAAGATCGTCCCCTAACCGCAAAACACCGGATGTAGCGCATCCTTCATCTTATAAAA
CCAGTGCAAAGTAGGTCCCTCGGCGATTTTGACTCCAGTTTTGTCCACGTGGCAGCTGAC
TCACGGTGGGACCCACGTGGCCCCCACCCGTCAGCCTCTTCATCCCCTCCCCTCTCTCCG
ATCCTCTCCTCTCTCATCCCCTCTCTTCTCTCTCATCCCACCCGTGGAGCGGCGGCGCAT
GGAGCCGGCAGGATGGAGCGGGGCGGCGGCGGGCGGAGTGGGCCGATGATGAGGTAAACC
GGTGGTGGGCGGAAAGGGGCGACGGCGAGGTAAACCGGCGGCGGGTGGAGAAGGCGAAAA
GGGAGATGGCGGTGGAGACAACGGTGGCGCGATGGAAGGCATCAAAGGAGATGGGGAGCG
CACTCCACGCCGTCGTGTCTCGTCGTCGCTGCTCCAAACACTGCTCCTCGTCCCCTC

consensusID : consensus_5341#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 285
fasta sequence

                              [TTNTTTTTTNTCGACCCAACTGTGACGTCGACCATTTAATACTGGAAAAAGTACACCGAAGTCCCTCAACTTGTCATCGAGTTACAAGATCGTCCCCTAACCGCAAAACACCGGATGTAGCGCATCCTTCATCTTATAAAACCAGTGCAAAGTAGGTCCCTCGGCGATTTTGACTCCAGTTTTGTCCACGTGGCANCTGACTCACGGTGGGACCCACGTGGCCCCCACCCGTCAGCCTCTTCATCCCCTCCCCTCTCTCCGATCNTCTCCTCTCTCATNCCCTCT]

[-] EMBL AU078150             [TTNTTTTTTNTCGACCCAACTGTGACGTCGACCATTTAATACTGGAAAAAGTACACCGAAGTCCCTCAACTTGTCATCGAGTTACAAGATCGTCCCCTAACCGCAAAACACCGGATGTAGCGCATCCTTCATCTTATAAAACCAGTGCAAAGTAGGTCCCTCGGCGATTTTGACTCCAGTTTTGTCCACGTGGCANCTGACTCACGGTGGGACCCACGTGGCCCCCACCCGTCAGCCTCTTCATCCCCTCCCCTCTCTCCGATCNTCTCCTCTCTCATNCCCTCT]




>consensus_5341#1
TTNTTTTTTNTCGACCCAACTGTGACGTCGACCATTTAATACTGGAAAAAGTACACCGAA
GTCCCTCAACTTGTCATCGAGTTACAAGATCGTCCCCTAACCGCAAAACACCGGATGTAG
CGCATCCTTCATCTTATAAAACCAGTGCAAAGTAGGTCCCTCGGCGATTTTGACTCCAGT
TTTGTCCACGTGGCANCTGACTCACGGTGGGACCCACGTGGCCCCCACCCGTCAGCCTCT
TCATCCCCTCCCCTCTCTCCGATCNTCTCCTCTCTCATNCCCTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5341#0      GTAACACCAAAAATTTATTAAATACGAATGACGTAACACCAAAAATTTTATAATAGTAGA 60
consensus_5341#1      ------------------------------------------------------------
                                                                                  

consensus_5341#0      GATTTAGACAAACCTGTTAAACTGGTAAAAAGGTCAGCTCGACCCAGCTCGACCCAACTG 120
consensus_5341#1      --------------------------------------TTNTTTTTTNTCGACCCAACTG 22
                                                            *         ************

consensus_5341#0      TGACGTCGACCATTTAATACTGGAAAAAGTACACCGAAGGTCCCTCAACTTGTCATCGAG 180
consensus_5341#1      TGACGTCGACCATTTAATACTGGAAAAAGTACACCGAAG-TCCCTCAACTTGTCATCGAG 81
                      *************************************** ********************

consensus_5341#0      TTACAAGATCGTCCCCTAACCGCAAAACACCGGATGTAGCGCATCCTTCATCTTATAAAA 240
consensus_5341#1      TTACAAGATCGTCCCCTAACCGCAAAACACCGGATGTAGCGCATCCTTCATCTTATAAAA 141
                      ************************************************************

consensus_5341#0      CCAGTGCAAAGTAGGTCCCTCGGCGATTTTGACTCCAGTTTTGTCCACGTGGCAGCTGAC 300
consensus_5341#1      CCAGTGCAAAGTAGGTCCCTCGGCGATTTTGACTCCAGTTTTGTCCACGTGGCANCTGAC 201
                      ****************************************************** *****

consensus_5341#0      TCACGGTGGGACCCACGTGGCCCCCACCCGTCAGCCTCTTCATCCCCTCCCCTCTCTCCG 360
consensus_5341#1      TCACGGTGGGACCCACGTGGCCCCCACCCGTCAGCCTCTTCATCCCCTCCCCTCTCTCCG 261
                      ************************************************************

consensus_5341#0      ATCCTCTCCTCTCTCATCCCCTCTCTTCTCTCTCATCCCACCCGTGGAGCGGCGGCGCAT 420
consensus_5341#1      ATCNTCTCCTCTCTCATNCCCTCT------------------------------------ 285
                      *** ************* ******                                    

consensus_5341#0      GGAGCCGGCAGGATGGAGCGGGGCGGCGGCGGGCGGAGTGGGCCGATGATGAGGTAAACC 480
consensus_5341#1      ------------------------------------------------------------
                                                                                  

consensus_5341#0      GGTGGTGGGCGGAAAGGGGCGACGGCGAGGTAAACCGGCGGCGGGTGGAGAAGGCGAAAA 540
consensus_5341#1      ------------------------------------------------------------
                                                                                  

consensus_5341#0      GGGAGATGGCGGTGGAGACAACGGTGGCGCGATGGAAGGCATCAAAGGAGATGGGGAGCG 600
consensus_5341#1      ------------------------------------------------------------
                                                                                  

consensus_5341#0      CACTCCACGCCGTCGTGTCTCGTCGTCGCTGCTCCAAACACTGCTCCTCGTCCCCTC 657
consensus_5341#1      ---------------------------------------------------------