These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5352#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 645 fasta sequence [CCACCCTCGACCCCTCTTCCTCCTCGATTCCGGCGACCTCGTCGCCGGCGGCGGGTAGGGAGAGGGGTCGTGACCACTACCACATAGTAGATCGGAAATCCAATCATCCAATCCAAGATTCCAAAAGTGGTTGGATTAATCGAGTCATCGAGATGAGCTCGCCGGGCGGCGTGAACGAGTGGGAGGACTCACCGGGGGAGATGGAGTCGGAGGCCGCCTCCGCCGTGGGCATGGGCATGATGGAGGTCGACGCCGACGACCGCCACCCGCCCTCCTCCTCCCTTCCCATCGATGCCGACTTCTTCAATTCCTTCCCCGACGACTTCGACGACCAAGACCTCGCCTGACCTCCTCTCCTCTCCTCTCCTCTCCCCTCCCCTCCCCTCCCCTCCGCATCGCAGGTGCCTGTTGTACCCAACATTCAATCCAAGATCCATCATGTCATCACATTTCCGAACCTAGGGAAATAGCTTCTTCTCCACCTCTAGTATTGTTACCATTATCGTATCCCCATCTAGACCTAAATATATACTATGGTTACCATTATATGTTTTATGCAACCAGTACTGGACCTGGTTAACACGCCCTCTCTGTACTGTACTGTACCTGATCANACGATTACCTGTTGGTAAANAAAAAAAAAAA] [+] EMBL CA754658 [CCACCCTCGACCCCTCTTCCTCCTCGATTCCGGCGACCTCGTCGCCGGCGGCGGGTAGGGAGAGGGGTCGTGACCACTACCACATAGTAGATCGGAAATCCAATCATCCAATCCAAGATTCCAAAAGTGGTTGGATTAATCGAGTCATCGAGATGAGCTCGCCGGGCGGCGTGAACGAGTGGGAGGACTCACCGGGGGAGATGGAGTCGGAGGCCGCCTCCGCCGTGGGCATGGGCATGATGGAGGTCGACGCCGACGACCGCCACCCGCCCTCCTCCTCCCTTCCCATCGATGCCGACTTCTTCAATTCCTTCCCCGACGACTTCGACGACCAAGACCTCGCCTGACCTCCTCTCCTCTCCTCTCCTCTCCCCTCCCCTCCCCTCCCCTCCGCATCGCAGGTGCCTGTTGTACCCAACATTCAATCCAAGATCCATCATGTCATCACATTTCCGAACCTAGGGAAATAGCTTCTTCTCCACCTCTAGTATTGTTACCATTATCGTATCCCCATCTAGACCTAAATATATACTATGGTTACCATTATATGTTTTATGCAACCAGTACTGGACCTGGTTAACACGCCCTCTCTGTACTGTACTGTACCTGATCANACGATTACCTGTTGGTAAANAAAAAAAAAAA] consensusID : consensus_5352#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence [CCTCTGCTGTGGTGTACCCTCCCTCCCTACCTACGACTACNAGTCGTTGTTGAAGTGGAGGAGGCAAAGCGAGGAGGAGGAGATTGGGGATCGGAAATCCAATCATCCGATCCAAGATTCCAAAAGTGGTTGGATTAATCGAGTCATCGAGATGAGCTCGCCGGGCGGCGTGAACGAGTGTGAGGACTCACCGGGGGAGATGGAGTCGGAGGCCGCCTCCGCCGTGGGCATGGGCATGATGGAGGTCGACGCCGACGACGGCCAGCCGCCCTCCTCCTCCGTTCGGATCGATGGCGACTTCTTCGATGTCTTCCCCGACGACGTTGACCGTGATGACCTCGTCTGACCTCGCCTCCGCTGTCTGCCGCTCCGTGCCCTCCCTTCCCTTTCCAGGCCGTTGTCCCGCGCGGTTCGGCCTACCGCGGCTAGTAGCGGTCGGGGCGTCGGCGTGTTGTATTGTGACGCAATGCTTGTTGTGCTACTGATGTCCAGTTTGTAGTATTGTAATCGCCTCTCGAGGTGAATATGTATGGTCGTTACGGTGCATCGTGTCTAGGAGTGGCGCCAGTCCTTGTGCTACACGGTTACTGTCCTCGGTGCTGCC] [+] EMBL CA754619 [CCTCTGCTGTGGTGTACCCTCCCTCCCTACCTACGACTACNAGTCGTTGTTGAAGTGGAGGAGGCAAAGCGAGGAGGAGGAGATTGGGGATCGGAAATCCAATCATCCGATCCAAGATTCCAAAAGTGGTTGGATTAATCGAGTCATCGAGATGAGCTCGCCGGGCGGCGTGAACGAGTGTGAGGACTCACCGGGGGAGATGGAGTCGGAGGCCGCCTCCGCCGTGGGCATGGGCATGATGGAGGTCGACGCCGACGACGGCCAGCCGCCCTCCTCCTCCGTTCGGATCGATGGCGACTTCTTCGATGTCTTCCCCGACGACGTTGACCGTGATGACCTCGTCTGACCTCGCCTCCGCTGTCTGCCGCTCCGTGCCCTCCCTTCCCTTTCCAGGCCGTTGTCCCGCGCGGTTCGGCCTACCGCGGCTAGTAGCGGTCGGGGCGTCGGCGTGTTGTATTGTGACGCAATGCTTGTTGTGCTACTGATGTCCAGTTTGTAGTATTGTAATCGCCTCTCGAGGTGAATATGTATGGTCGTTACGGTGCATCGTGTCTAGGAGTGGCGCCAGTCCTTGTGCTACACGGTTACTGTCCTCGGTGCTGCC] consensusID : consensus_5352#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence [CTTGCTTGCTTCCTCCTCGCTCTCCCTCCCTCTCTTCGCTTCCCTCCCCTCCCCTCCCCATCGCAGGTGCCTGTTGTACCCAACATCAAATCCAAGATCCATCATGTCATCACATTTCGTAGCCAAGGAAATGCTTCTTCTCCACCTCTAGTATTGTTACCATTATTGTATCCCCATCTAGACCTACATATATACTATTGTTACCATTATATGTTTTATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF299720 [CTTGCTTGCTTCCTCCTCGCTCTCCCTCCCTCTCTTCGCTTCCCTCCCCTCCCCTCCCCATCGCAGGTGCCTGTTGTACCCAACATCAAATCCAAGATCCATCATGTCATCACATTTCGTAGCCAAGGAAATGCTTCTTCTCCACCTCTAGTATTGTTACCATTATTGTATCCCCATCTAGACCTACATATATACTATTGTTACCATTATATGTTTTATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5352#0 CCACCCTCGACCCCTCTTCCTCCTCGATTCCGGCGACCTCGTCGCCGGCGGCGGGTAGGG 60 consensus_5352#2 ------------------------------------------------------------ consensus_5352#1 -CCTCTGCTGTGGTGTACCCTCCCTCCCTACCTACGACTACNAGTCGTTGTTGAAGTGGA 59 consensus_5352#0 AGAGGGGTCGTGACCACTACCACATAGTAGATCGGAAATCCAATCATCCAATCCAAGATT 120 consensus_5352#2 ------------------------------------------------------------ consensus_5352#1 GGAGGCAAAGCGAGGAGGAGGAGATTGGGGATCGGAAATCCAATCATCCGATCCAAGATT 119 consensus_5352#0 CCAAAAGTGGTTGGATTAATCGAGTCATCGAGATGAGCTCGCCGGGCGGCGTGAACGAGT 180 consensus_5352#2 ------------------------------------------------------------ consensus_5352#1 CCAAAAGTGGTTGGATTAATCGAGTCATCGAGATGAGCTCGCCGGGCGGCGTGAACGAGT 179 consensus_5352#0 GGGAGGACTCACCGGGGGAGATGGAGTCGGAGGCCGCCTCCGCCGTGGGCATGGGCATGA 240 consensus_5352#2 ------------------------------------------------------------ consensus_5352#1 GTGAGGACTCACCGGGGGAGATGGAGTCGGAGGCCGCCTCCGCCGTGGGCATGGGCATGA 239 consensus_5352#0 TGGAGGTCGACGCCGACGACCGCCACCCGCCCTCCTCCTCCCTTCCCATCGATGCCGACT 300 consensus_5352#2 ------------------------------------------------------------ consensus_5352#1 TGGAGGTCGACGCCGACGACGGCCAGCCGCCCTCCTCCTCCGTTCGGATCGATGGCGACT 299 consensus_5352#0 TCTTCAATTCCTTCCCCGACGACTTCGACGACCAAGACCTCGCCTGACCTCCTCTC---C 357 consensus_5352#2 --------------------------------------CTTGCTTGCTTCCTCCTCGCTC 22 consensus_5352#1 TCTTCGATGTCTTCCCCGACGACGTTGACCGTGATGACCTCGTCTGACCTCGCCTC---C 356 ** * ** * *** * consensus_5352#0 TCTCCTCTCCTCTCCCCTCCCCTCCCCTCCCCTCCGCATCGCAGGTGCCTGTTGTACCCA 417 consensus_5352#2 TCCCTCCCTCTCTTCGCTTCCCTCCCCTCCCCTCCCCATCGCAGGTGCCTGTTGTACCCA 82 consensus_5352#1 GCTGTCTGCCGCTCCGTGCCCTCCCTTCCCTTTCCAGGCCGTTGTCCCGCGCGGTTCGGC 416 * * ** * ** ** ** *** ** * * * ** * consensus_5352#0 ACATTCAATCCAAGATCCATCATGTCATCACATTTCCGAACC-TAGGGAAATAGCTTCTT 476 consensus_5352#2 ACATCAAATCCAAGATCCATCATGTCATCACATTTC-GTAGC-CAAGGAAAT-GCTTCTT 139 consensus_5352#1 CTACCGCGGCTAGTAGCGGTCGGGGCGTCGGCGTGTTGTATTGTGACGCAAT-GCTTGTT 475 * * * * * ** * * ** * * * * *** **** ** consensus_5352#0 CTCCACCTCTAGTATTGTTACCATTATCGTATCCCCATCTAGACCTAAATATATACTATG 536 consensus_5352#2 CTCCACCTCTAGTATTGTTACCATTATTGTATCCCCATCTAGACCTACATATATACTATT 199 consensus_5352#1 GTGCTACTGATGTCCAGTTTGTAGTATTGTAATCGCCTCTCGAGGTGAATATGTATGGTC 535 * * ** ** *** * *** *** * * *** ** * **** ** * consensus_5352#0 GTTACCATTATATGTTTTATGCAACCAGTACTGGACCTGGTTAACACGCCCTCTCTGTAC 596 consensus_5352#2 GTTACCATTATATGTTTTATGCAAAAAAAAAAAAAAAAAAAAAAAAAAA-------AAAA 252 consensus_5352#1 GTTACGGTGCATCGTGTCTAGGAGTGGCGCCAGTCCTTGTGCTACACGGTTACTGTCCTC 595 ***** * ** * * * * * consensus_5352#0 TGTACTGTACCTGATCANACGATTACCTGTTGGTAAANAAAAAAAAAAA 645 consensus_5352#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 301 consensus_5352#1 GGTGCTGCC---------------------------------------- 604 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||