cluster # 5352

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Oryza sativa
cluster # 5352 cluster # 5352 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5352#0 length = 645 sequences # 1

consensus_5352#1 length = 604 sequences # 1
consensus_5352#2 length = 301 sequences # 1

consensusID : consensus_5352#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 645
fasta sequence

                              [CCACCCTCGACCCCTCTTCCTCCTCGATTCCGGCGACCTCGTCGCCGGCGGCGGGTAGGGAGAGGGGTCGTGACCACTACCACATAGTAGATCGGAAATCCAATCATCCAATCCAAGATTCCAAAAGTGGTTGGATTAATCGAGTCATCGAGATGAGCTCGCCGGGCGGCGTGAACGAGTGGGAGGACTCACCGGGGGAGATGGAGTCGGAGGCCGCCTCCGCCGTGGGCATGGGCATGATGGAGGTCGACGCCGACGACCGCCACCCGCCCTCCTCCTCCCTTCCCATCGATGCCGACTTCTTCAATTCCTTCCCCGACGACTTCGACGACCAAGACCTCGCCTGACCTCCTCTCCTCTCCTCTCCTCTCCCCTCCCCTCCCCTCCCCTCCGCATCGCAGGTGCCTGTTGTACCCAACATTCAATCCAAGATCCATCATGTCATCACATTTCCGAACCTAGGGAAATAGCTTCTTCTCCACCTCTAGTATTGTTACCATTATCGTATCCCCATCTAGACCTAAATATATACTATGGTTACCATTATATGTTTTATGCAACCAGTACTGGACCTGGTTAACACGCCCTCTCTGTACTGTACTGTACCTGATCANACGATTACCTGTTGGTAAANAAAAAAAAAAA]

[+] EMBL CA754658             [CCACCCTCGACCCCTCTTCCTCCTCGATTCCGGCGACCTCGTCGCCGGCGGCGGGTAGGGAGAGGGGTCGTGACCACTACCACATAGTAGATCGGAAATCCAATCATCCAATCCAAGATTCCAAAAGTGGTTGGATTAATCGAGTCATCGAGATGAGCTCGCCGGGCGGCGTGAACGAGTGGGAGGACTCACCGGGGGAGATGGAGTCGGAGGCCGCCTCCGCCGTGGGCATGGGCATGATGGAGGTCGACGCCGACGACCGCCACCCGCCCTCCTCCTCCCTTCCCATCGATGCCGACTTCTTCAATTCCTTCCCCGACGACTTCGACGACCAAGACCTCGCCTGACCTCCTCTCCTCTCCTCTCCTCTCCCCTCCCCTCCCCTCCCCTCCGCATCGCAGGTGCCTGTTGTACCCAACATTCAATCCAAGATCCATCATGTCATCACATTTCCGAACCTAGGGAAATAGCTTCTTCTCCACCTCTAGTATTGTTACCATTATCGTATCCCCATCTAGACCTAAATATATACTATGGTTACCATTATATGTTTTATGCAACCAGTACTGGACCTGGTTAACACGCCCTCTCTGTACTGTACTGTACCTGATCANACGATTACCTGTTGGTAAANAAAAAAAAAAA]




>consensus_5352#0
CCACCCTCGACCCCTCTTCCTCCTCGATTCCGGCGACCTCGTCGCCGGCGGCGGGTAGGG
AGAGGGGTCGTGACCACTACCACATAGTAGATCGGAAATCCAATCATCCAATCCAAGATT
CCAAAAGTGGTTGGATTAATCGAGTCATCGAGATGAGCTCGCCGGGCGGCGTGAACGAGT
GGGAGGACTCACCGGGGGAGATGGAGTCGGAGGCCGCCTCCGCCGTGGGCATGGGCATGA
TGGAGGTCGACGCCGACGACCGCCACCCGCCCTCCTCCTCCCTTCCCATCGATGCCGACT
TCTTCAATTCCTTCCCCGACGACTTCGACGACCAAGACCTCGCCTGACCTCCTCTCCTCT
CCTCTCCTCTCCCCTCCCCTCCCCTCCCCTCCGCATCGCAGGTGCCTGTTGTACCCAACA
TTCAATCCAAGATCCATCATGTCATCACATTTCCGAACCTAGGGAAATAGCTTCTTCTCC
ACCTCTAGTATTGTTACCATTATCGTATCCCCATCTAGACCTAAATATATACTATGGTTA
CCATTATATGTTTTATGCAACCAGTACTGGACCTGGTTAACACGCCCTCTCTGTACTGTA
CTGTACCTGATCANACGATTACCTGTTGGTAAANAAAAAAAAAAA

consensusID : consensus_5352#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 604
fasta sequence

                              [CCTCTGCTGTGGTGTACCCTCCCTCCCTACCTACGACTACNAGTCGTTGTTGAAGTGGAGGAGGCAAAGCGAGGAGGAGGAGATTGGGGATCGGAAATCCAATCATCCGATCCAAGATTCCAAAAGTGGTTGGATTAATCGAGTCATCGAGATGAGCTCGCCGGGCGGCGTGAACGAGTGTGAGGACTCACCGGGGGAGATGGAGTCGGAGGCCGCCTCCGCCGTGGGCATGGGCATGATGGAGGTCGACGCCGACGACGGCCAGCCGCCCTCCTCCTCCGTTCGGATCGATGGCGACTTCTTCGATGTCTTCCCCGACGACGTTGACCGTGATGACCTCGTCTGACCTCGCCTCCGCTGTCTGCCGCTCCGTGCCCTCCCTTCCCTTTCCAGGCCGTTGTCCCGCGCGGTTCGGCCTACCGCGGCTAGTAGCGGTCGGGGCGTCGGCGTGTTGTATTGTGACGCAATGCTTGTTGTGCTACTGATGTCCAGTTTGTAGTATTGTAATCGCCTCTCGAGGTGAATATGTATGGTCGTTACGGTGCATCGTGTCTAGGAGTGGCGCCAGTCCTTGTGCTACACGGTTACTGTCCTCGGTGCTGCC]

[+] EMBL CA754619             [CCTCTGCTGTGGTGTACCCTCCCTCCCTACCTACGACTACNAGTCGTTGTTGAAGTGGAGGAGGCAAAGCGAGGAGGAGGAGATTGGGGATCGGAAATCCAATCATCCGATCCAAGATTCCAAAAGTGGTTGGATTAATCGAGTCATCGAGATGAGCTCGCCGGGCGGCGTGAACGAGTGTGAGGACTCACCGGGGGAGATGGAGTCGGAGGCCGCCTCCGCCGTGGGCATGGGCATGATGGAGGTCGACGCCGACGACGGCCAGCCGCCCTCCTCCTCCGTTCGGATCGATGGCGACTTCTTCGATGTCTTCCCCGACGACGTTGACCGTGATGACCTCGTCTGACCTCGCCTCCGCTGTCTGCCGCTCCGTGCCCTCCCTTCCCTTTCCAGGCCGTTGTCCCGCGCGGTTCGGCCTACCGCGGCTAGTAGCGGTCGGGGCGTCGGCGTGTTGTATTGTGACGCAATGCTTGTTGTGCTACTGATGTCCAGTTTGTAGTATTGTAATCGCCTCTCGAGGTGAATATGTATGGTCGTTACGGTGCATCGTGTCTAGGAGTGGCGCCAGTCCTTGTGCTACACGGTTACTGTCCTCGGTGCTGCC]




>consensus_5352#1
CCTCTGCTGTGGTGTACCCTCCCTCCCTACCTACGACTACNAGTCGTTGTTGAAGTGGAG
GAGGCAAAGCGAGGAGGAGGAGATTGGGGATCGGAAATCCAATCATCCGATCCAAGATTC
CAAAAGTGGTTGGATTAATCGAGTCATCGAGATGAGCTCGCCGGGCGGCGTGAACGAGTG
TGAGGACTCACCGGGGGAGATGGAGTCGGAGGCCGCCTCCGCCGTGGGCATGGGCATGAT
GGAGGTCGACGCCGACGACGGCCAGCCGCCCTCCTCCTCCGTTCGGATCGATGGCGACTT
CTTCGATGTCTTCCCCGACGACGTTGACCGTGATGACCTCGTCTGACCTCGCCTCCGCTG
TCTGCCGCTCCGTGCCCTCCCTTCCCTTTCCAGGCCGTTGTCCCGCGCGGTTCGGCCTAC
CGCGGCTAGTAGCGGTCGGGGCGTCGGCGTGTTGTATTGTGACGCAATGCTTGTTGTGCT
ACTGATGTCCAGTTTGTAGTATTGTAATCGCCTCTCGAGGTGAATATGTATGGTCGTTAC
GGTGCATCGTGTCTAGGAGTGGCGCCAGTCCTTGTGCTACACGGTTACTGTCCTCGGTGC
TGCC

consensusID : consensus_5352#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 301
fasta sequence

                              [CTTGCTTGCTTCCTCCTCGCTCTCCCTCCCTCTCTTCGCTTCCCTCCCCTCCCCTCCCCATCGCAGGTGCCTGTTGTACCCAACATCAAATCCAAGATCCATCATGTCATCACATTTCGTAGCCAAGGAAATGCTTCTTCTCCACCTCTAGTATTGTTACCATTATTGTATCCCCATCTAGACCTACATATATACTATTGTTACCATTATATGTTTTATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF299720             [CTTGCTTGCTTCCTCCTCGCTCTCCCTCCCTCTCTTCGCTTCCCTCCCCTCCCCTCCCCATCGCAGGTGCCTGTTGTACCCAACATCAAATCCAAGATCCATCATGTCATCACATTTCGTAGCCAAGGAAATGCTTCTTCTCCACCTCTAGTATTGTTACCATTATTGTATCCCCATCTAGACCTACATATATACTATTGTTACCATTATATGTTTTATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_5352#2
CTTGCTTGCTTCCTCCTCGCTCTCCCTCCCTCTCTTCGCTTCCCTCCCCTCCCCTCCCCA
TCGCAGGTGCCTGTTGTACCCAACATCAAATCCAAGATCCATCATGTCATCACATTTCGT
AGCCAAGGAAATGCTTCTTCTCCACCTCTAGTATTGTTACCATTATTGTATCCCCATCTA
GACCTACATATATACTATTGTTACCATTATATGTTTTATGCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5352#0      CCACCCTCGACCCCTCTTCCTCCTCGATTCCGGCGACCTCGTCGCCGGCGGCGGGTAGGG 60
consensus_5352#2      ------------------------------------------------------------
consensus_5352#1      -CCTCTGCTGTGGTGTACCCTCCCTCCCTACCTACGACTACNAGTCGTTGTTGAAGTGGA 59
                                                                                  

consensus_5352#0      AGAGGGGTCGTGACCACTACCACATAGTAGATCGGAAATCCAATCATCCAATCCAAGATT 120
consensus_5352#2      ------------------------------------------------------------
consensus_5352#1      GGAGGCAAAGCGAGGAGGAGGAGATTGGGGATCGGAAATCCAATCATCCGATCCAAGATT 119
                                                                                  

consensus_5352#0      CCAAAAGTGGTTGGATTAATCGAGTCATCGAGATGAGCTCGCCGGGCGGCGTGAACGAGT 180
consensus_5352#2      ------------------------------------------------------------
consensus_5352#1      CCAAAAGTGGTTGGATTAATCGAGTCATCGAGATGAGCTCGCCGGGCGGCGTGAACGAGT 179
                                                                                  

consensus_5352#0      GGGAGGACTCACCGGGGGAGATGGAGTCGGAGGCCGCCTCCGCCGTGGGCATGGGCATGA 240
consensus_5352#2      ------------------------------------------------------------
consensus_5352#1      GTGAGGACTCACCGGGGGAGATGGAGTCGGAGGCCGCCTCCGCCGTGGGCATGGGCATGA 239
                                                                                  

consensus_5352#0      TGGAGGTCGACGCCGACGACCGCCACCCGCCCTCCTCCTCCCTTCCCATCGATGCCGACT 300
consensus_5352#2      ------------------------------------------------------------
consensus_5352#1      TGGAGGTCGACGCCGACGACGGCCAGCCGCCCTCCTCCTCCGTTCGGATCGATGGCGACT 299
                                                                                  

consensus_5352#0      TCTTCAATTCCTTCCCCGACGACTTCGACGACCAAGACCTCGCCTGACCTCCTCTC---C 357
consensus_5352#2      --------------------------------------CTTGCTTGCTTCCTCCTCGCTC 22
consensus_5352#1      TCTTCGATGTCTTCCCCGACGACGTTGACCGTGATGACCTCGTCTGACCTCGCCTC---C 356
                                                            ** *  **    *  ***   *

consensus_5352#0      TCTCCTCTCCTCTCCCCTCCCCTCCCCTCCCCTCCGCATCGCAGGTGCCTGTTGTACCCA 417
consensus_5352#2      TCCCTCCCTCTCTTCGCTTCCCTCCCCTCCCCTCCCCATCGCAGGTGCCTGTTGTACCCA 82
consensus_5352#1      GCTGTCTGCCGCTCCGTGCCCTCCCTTCCCTTTCCAGGCCGTTGTCCCGCGCGGTTCGGC 416
                       *       * ** *    **  **   **  ***    **  *   *  *  ** *   

consensus_5352#0      ACATTCAATCCAAGATCCATCATGTCATCACATTTCCGAACC-TAGGGAAATAGCTTCTT 476
consensus_5352#2      ACATCAAATCCAAGATCCATCATGTCATCACATTTC-GTAGC-CAAGGAAAT-GCTTCTT 139
consensus_5352#1      CTACCGCGGCTAGTAGCGGTCGGGGCGTCGGCGTGTTGTATTGTGACGCAAT-GCTTGTT 475
                        *      * *  * *  **  * * **    *   * *       * *** **** **

consensus_5352#0      CTCCACCTCTAGTATTGTTACCATTATCGTATCCCCATCTAGACCTAAATATATACTATG 536
consensus_5352#2      CTCCACCTCTAGTATTGTTACCATTATTGTATCCCCATCTAGACCTACATATATACTATT 199
consensus_5352#1      GTGCTACTGATGTCCAGTTTGTAGTATTGTAATCGCCTCTCGAGGTGAATATGTATGGTC 535
                       * *  **   **   ***   * *** ***  * * *** **  *  **** **   * 

consensus_5352#0      GTTACCATTATATGTTTTATGCAACCAGTACTGGACCTGGTTAACACGCCCTCTCTGTAC 596
consensus_5352#2      GTTACCATTATATGTTTTATGCAAAAAAAAAAAAAAAAAAAAAAAAAAA-------AAAA 252
consensus_5352#1      GTTACGGTGCATCGTGTCTAGGAGTGGCGCCAGTCCTTGTGCTACACGGTTACTGTCCTC 595
                      *****  *     ** *   * *                    * *              

consensus_5352#0      TGTACTGTACCTGATCANACGATTACCTGTTGGTAAANAAAAAAAAAAA 645
consensus_5352#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 301
consensus_5352#1      GGTGCTGCC---------------------------------------- 604