Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5364 cluster # 5364       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5364#0 length = 916 sequences # 3  

consensusID : consensus_5364#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 916
fasta sequence
                              [AAGTCTTCTTTATAAAGCTTTGGTGACCACCCGGAACCATCACACCTAAGTTTCTGATATCCCTAGTGTTGTTATTAGAATGGTAAAGTTACTCATTGTTTAAAAAAAATAAAAAAGAATGTAGGTACTCTCTAGCTTCATAATATACGATAAAGTCTTTATCAACTCTAGAGCTGCAAGCATGCCAAGGTCAGTAAATTGGTGTGTAGAATGATTGAACCTTACATTAACTGCTGTGTTTTACTGCTCTCTGCAGATGTTTATCTCGCTGGAACACGTCATGCTGATCTTTGGGATGGGCTTGTACGGGCTGTTCATCAGCAATACTTCTACTGATGTTCCTTCTGAGTCTGACAGAGCTCTGCAGGGATCATCCTTATTTGGGATGTTTGCTTTAAAGGAAAGACCAAGTGGATGAAGATTACCTCCCCTGGACGAACTGAAAACCCAAGTAGGGCATGTCATCGTCATGATCCTTCTGGTGAAGATGTTCGAGAGGAGC-AAATGGTGAAGATAACAACGGGGTTGGACCTGCTGAGCTACTCGGTCTGCATCTTCCTGTCGTCCGCTTCACTGTACATCCTGCACAACCTTCACAGGCCTGAACAGGATGACTCGGTTATGCCAAACTTGTAAAGTCATCGAGAGTTAGGAAAAGAAAAAAAAATCATACCACCATCAAATCATGAGCTCATGATCTGTAGCACCGGATGGAATTGTATTAGTACCATCCTGATGTGCCCAAAGCA-GGGTAAAAAAAAGAGAGCAAAGAACCCCTGAACC-ATCTCTCTGTGAAAAGGCAAGATCAAGGACAGCTTCAAATATAGCTAC-AAAAGAATTAAAGCCCTGAAAAAAAATATAGAATTCTTGGTATATTACTATATTATGTTAATTAAGGTNTAAAAAAAAAAAAAAA]

[+] EMBL BI807583             [AAGTCTTCTTTATAAAGCTTTGGTGACCACCCGGAACCATCACACCTAAGTTTCTGATATCCCTAGTGTTGTTATTAGAATGGTAAAGTTACTCATTGTTTAAAAAAAATAAAAAAGAATGTAGGTACTCTCTAGCTTCATAATATACGATAAAGTCTTTATCAACTCTAGAGCTGCAAGCATGCCAAGGTCAGTAAATTGGTGTGTAGAATGATTGAACCTTACATTAACTGCTGTGTTTTACTGCTCTCTGCAGATGTTTATCTCGCTGGAACACGTCATGCTGATCTTTGGGATGGGCTTGTACGGGCTGTTCATCAGCAATACTTCTACTGATGTTCCTTCTGAGTCTGACAGAGCTCTGCAGGGATCATCCTTATTTGGGATGTTTGCTTTAAAGGAAAGACCAAGTGGATGAAGATTACCTCCCCTGGACGAACTGAAAACCCAAGTAGGGCATGTCATCGTCATGATCCTTCTGGTGAAGATGTTCGAGAGGAGC AAATGGTGAAGATAACAACGGGGTTGGACCTGCTGAGCTACTCGGTCTGCATCTTCCTGTCGTCCGCTTCACTGTACATCCTGCAC ACCTTCACAGGCCTGAACAGGATGACTCGGTTATGCCCAACTTGTAAAGTCATCGAGAGTTA  AAAAAAAAA                                                                                                                                                                                                                                                                 ]
[+] EMBL BI799145             [                                                                                                                                                                                                                                                                                                                                                                                                                                      TACCT  CCTGGACGAACTGAAAA CCAAGTAGGGCATGTCATCGTCATGATCCTTCTGGTGAAGATGTTCGAGAGGAGC AAATGGTGAAGATAACAACGGGGTTGGACCTGCTGAGCTACTCGGTCTGCATCTTCCTGTCGTCCGCTTCACTGTACATCCTGCACAACCTTCACAGGCCTGAACAGGATGACTCGGTTATGCCAAACTTGTAAAGTCATCGAGAGTTAGGAAAAGAAAAAAAAATCATACCACCATCAAATCATGAGCTCATGATCTGTAGCACCGGATGGAATTGTATTAGTACCATCCTGATGTGCCCAAAGCACGGGTAAAAAAAAGAGAGCAAAGAACCCCTGAACC ATCTCTCTGTGAAAAGGCAAGATCAAGGACAGCTTCAAATATAGCTAC AAAAGAATTAAAGCCCTGAAAAAAAA                                                           ]
[+] EMBL AU173917             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GTGAAGATGTTCGAGAGGAGCAAAATGGTGAAGATAACAACGGGGTTGGACCTGCTGAGCTACTCGGTCTGCATCTTCCTGTCGTCCGCTTCACTGTACATCCTGCACAACCTTCACAGGCCTGAACAGGATGACTCGGTTATGCCAAACTTGTAAAGTCATCGAGAGTTAGGAAAAGAAAAAAAAATCATACCCCCATCAAATCATGAGCTCATGATCTGTAGCNCCGGATGGAATTGTATTAGTACCATCCTGATGTGCCAAAAGCA GGGTAAAAAAAAGAGAGCAAAGAACCCCTGAACCAATCTCTNTGTGAAAAGGCAAGATCAAGGACAGCTTCAAATATAGCTACAAAAAGAATTAAAGCNCTGAAATTTTGTATAGAATTCTTGGTATATTACTATATTATGTTAATTAAGGTNTAAAAAAAAAAAAAAA]


>consensus_5364#0 AAGTCTTCTTTATAAAGCTTTGGTGACCACCCGGAACCATCACACCTAAGTTTCTGATAT CCCTAGTGTTGTTATTAGAATGGTAAAGTTACTCATTGTTTAAAAAAAATAAAAAAGAAT GTAGGTACTCTCTAGCTTCATAATATACGATAAAGTCTTTATCAACTCTAGAGCTGCAAG CATGCCAAGGTCAGTAAATTGGTGTGTAGAATGATTGAACCTTACATTAACTGCTGTGTT TTACTGCTCTCTGCAGATGTTTATCTCGCTGGAACACGTCATGCTGATCTTTGGGATGGG CTTGTACGGGCTGTTCATCAGCAATACTTCTACTGATGTTCCTTCTGAGTCTGACAGAGC TCTGCAGGGATCATCCTTATTTGGGATGTTTGCTTTAAAGGAAAGACCAAGTGGATGAAG ATTACCTCCCCTGGACGAACTGAAAACCCAAGTAGGGCATGTCATCGTCATGATCCTTCT GGTGAAGATGTTCGAGAGGAGCAAATGGTGAAGATAACAACGGGGTTGGACCTGCTGAGC TACTCGGTCTGCATCTTCCTGTCGTCCGCTTCACTGTACATCCTGCACAACCTTCACAGG CCTGAACAGGATGACTCGGTTATGCCAAACTTGTAAAGTCATCGAGAGTTAGGAAAAGAA AAAAAAATCATACCACCATCAAATCATGAGCTCATGATCTGTAGCACCGGATGGAATTGT ATTAGTACCATCCTGATGTGCCCAAAGCAGGGTAAAAAAAAGAGAGCAAAGAACCCCTGA ACCATCTCTCTGTGAAAAGGCAAGATCAAGGACAGCTTCAAATATAGCTACAAAAGAATT AAAGCCCTGAAAAAAAATATAGAATTCTTGGTATATTACTATATTATGTTAATTAAGGTN TAAAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)