These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5368#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 803 fasta sequence [TGCTGGTGCGCCCGCCGCGCTCGCCCCGAGAGGACCCTATGGCGACGCAGCTCTCCGCCACCTTCGCCCCTGCCGCGACCACCACCGCCACGCCCCTCCCGGCGCCGCAGCAGCGGCTCCGGCACGGCCGCCGCTGCTACCACGCGCTGTCGCTGCGCCCTCCCCGCGCGGCGTCCGGCGATGACGGCGCCGGCGGCGAGGTGGAGCCCGCTGCCCCGGCGGCGCCCGCCAAGACGGCCACCGCCACGGACGACGGCGGCGACGACTTCGAGGAGCGCGTCCTGCGCATCAAGTCCCGCGTCGGGCCCAAGAAGCGAGGCAGCGCCGCGGCGCGGAAGAGGAAGGGCGGCGCCGGGGCGTCGTCCAAGTCCAAGGCTGCCGTGACGCTCCCGCCCGTGCCGCTGCGGGAGGCCCGGTCTTCCGTGGGCGTGCCCGTTGAGTTCGGGTTCAGCGCGTACAGCGAGAGGCTCAACGGCGCGCTCGCGGCGGTCGGCCTGGCGGCGCTGCTGCTCGTGGAGCTCGGCTCCGGGAAGGCGCTCGTCAAGTACCACCAGCCGGCCACGCTGTTCCTCCAGGTGTACACCGTCGCCGCGGCGGGCGCCGTGTTCGTCAAGTACGAGAAGGAGCGGATCAGCGTGTGGCCCGGGCCGCCGGCGACCAAGCCGCCGGCTACC-GGTGAATGATTGGCACATGGGGGTTTCTATTTGACTTTTTTGTAGGATATGCTTCTTTTTTTGTAATTTACCCATATACCTCGTTGAGTTACTGTACTTTATCGACAAATTGTGTTGTGAAATATTGAA] [+] EMBL AK108194 [TGCTGGTGCGCCCGCCGCGCTCGCCCCGAGAGGACCCTATGGCGACGCAGCTCTCCGCCACCTTCGCCCCTGCCGCGACCACCACCGCCACGCCCCTCCCGGCGCCGCAGCAGCGGCTCCGGCACGGCCGCCGCTGCTACCACGCGCTGTCGCTGCGCCCTCCCCGCGCGGCGTCCGGCGATGACGGCGCCGGCGGCGAGGTGGAGCCCGCTGCCCCGGCGGCGCCCGCCAAGACGGCCACCGCCACGGACGACGGCGGCGACGACTTCGAGGAGCGCGTCCTGCGCATCAAGTCCCGCGTCGGGCCCAAGAAGCGAGGCAGCGCCGCGGCGCGGAAGAGGAAGGGCGGCGCCGGGGCGTCGTCCAAGTCCAAGGCTGCCGTGACGCTCCCGCCCGTGCCGCTGCGGGAGGCCCGGTCTTCCGTGGGCGTGCCCGTTGAGTTCGGGTTCAGCGCGTACAGCGAGAGGCTCAACGGCGCGCTCGCGGCGGTCGGCCTGGCGGCGCTGCTGCTCGTGGAGCTCGGCTCCGGGAAGGCGCTCGTCAAGTACCACCAGCCGGCCACGCTGTTCCTCCAGGTGTACACCGTCGCCGCGGCGGGCGCCGTGTTCGTCAAGTACGAGAAGGAGCGGATCAGCGTGTGGCCCGGGCCGCCGGCGACCAAGCCGCCGGCTACC GGTGAATGATTGGCACATGGGGGTTTCTATTTGACTTTTTTGTAGGATATGCTTCTTTTTTTGTAATTTACCCATATACCTCGTTGAGTTACTGTACTTTATCGACAAATTGTGTTGTGAAATATTG ] [+] EMBL AU173951 [ GCTCCGGGAAGGCGCTCGTCAAGTACCNCCAGCCGGCCNCGCTGTTCCTCCAGGTGTACNCCGTCGCCGCGGCGGGCGCCGTGTTNGTCAAGTACGAGAAGGAGCGGATCAGCGTGTGGCCCGGGCCGCCGGCGACCNANCCGCCGGCTACCGGGTGAATGATTGGCACATGGGGGTTTNTATTTGACTTTTTTGTAGGATATGCTTCTTTTTTTGTAATTTACCCATATACCTCGTTGAGTTACTGTACTTTATCGACAAATTGTGTTGTGAAAaaaaaaa] consensusID : consensus_5368#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 247 fasta sequence [NTNCGCNTGNCACCCTCCCCGCGCGGCGTCCGGCGATGACGGCGCCGGCGGNAAGGTTGGAGCCCGCTGCCCCGGCGGCGCCCGCTAAGACGGCCACCGCCACGGACGACGGCGGCGACGACTTCGAGGAGCGCGTNCTGCGCATCAAGTCCCGCGTCGGGCCCAAGAAGCNAGGCAGCNCCGCGGCNGGAAAGATGAAGGGCGGCGCNGGGCGTCGTCCAATTCAAAGGTTGCGTTANCNTTCCCG] [+] EMBL C73585 [NTNCGCNTGNCACCCTCCCCGCGCGGCGTCCGGCGATGACGGCGCCGGCGGNAAGGTTGGAGCCCGCTGCCCCGGCGGCGCCCGCTAAGACGGCCACCGCCACGGACGACGGCGGCGACGACTTCGAGGAGCGCGTNCTGCGCATCAAGTCCCGCGTCGGGCCCAAGAAGCNAGGCAGCNCCGCGGCNGGAAAGATGAAGGGCGGCGCNGGGCGTCGTCCAATTCAAAGGTTGCGTTANCNTTCCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5368#0 TGCTGGTGCGCCCGCCGCGCTCGCCCCGAGAGGACCCTATGGCGACGCAGCTCTCCGCCA 60 consensus_5368#1 ------------------------------------------------------------ consensus_5368#0 CCTTCGCCCCTGCCGCGACCACCACCGCCACGCCCCTCCCGGCGCCGCAGCAGCGGCTCC 120 consensus_5368#1 ------------------------------------------------------------ consensus_5368#0 GGCACGGCCGCCGCTGCTACCACGCGCTGTCGCTGCGCCCTCCCCGCGCGGCGTCCGGCG 180 consensus_5368#1 -------------------------NTNCGCNTGNCACCCTCCCCGCGCGGCGTCCGGCG 35 * * *********************** consensus_5368#0 ATGACGGCGCCGGCGGCGAGGT-GGAGCCCGCTGCCCCGGCGGCGCCCGCCAAGACGGCC 239 consensus_5368#1 ATGACGGCGCCGGCGGNAAGGTTGGAGCCCGCTGCCCCGGCGGCGCCCGCTAAGACGGCC 95 **************** **** *************************** ********* consensus_5368#0 ACCGCCACGGACGACGGCGGCGACGACTTCGAGGAGCGCGTCCTGCGCATCAAGTCCCGC 299 consensus_5368#1 ACCGCCACGGACGACGGCGGCGACGACTTCGAGGAGCGCGTNCTGCGCATCAAGTCCCGC 155 ***************************************** ****************** consensus_5368#0 GTCGGGCCCAAGAAGCGAGGCAGCGCCGCGGCGCGGAAGAGGAAGGGCGGCGCCGGGGCG 359 consensus_5368#1 GTCGGGCCCAAGAAGCNAGGCAGCNCCGCGGCNGGAAAGATGAAGGGCGGCGCNGGG-CG 214 **************** ******* ******* * **** ************ *** ** consensus_5368#0 TCGTCCAAGTCCAAGGCTGCCGTGACGCTCCCGCCCGTGCCGCTGCGGGAGGCCCGGTCT 419 consensus_5368#1 TCGTCCAATTCAAAGGTTGCGTTANCNTTCCCG--------------------------- 247 ******** ** **** *** * * ***** consensus_5368#0 TCCGTGGGCGTGCCCGTTGAGTTCGGGTTCAGCGCGTACAGCGAGAGGCTCAACGGCGCG 479 consensus_5368#1 ------------------------------------------------------------ consensus_5368#0 CTCGCGGCGGTCGGCCTGGCGGCGCTGCTGCTCGTGGAGCTCGGCTCCGGGAAGGCGCTC 539 consensus_5368#1 ------------------------------------------------------------ consensus_5368#0 GTCAAGTACCACCAGCCGGCCACGCTGTTCCTCCAGGTGTACACCGTCGCCGCGGCGGGC 599 consensus_5368#1 ------------------------------------------------------------ consensus_5368#0 GCCGTGTTCGTCAAGTACGAGAAGGAGCGGATCAGCGTGTGGCCCGGGCCGCCGGCGACC 659 consensus_5368#1 ------------------------------------------------------------ consensus_5368#0 AAGCCGCCGGCTACCGGTGAATGATTGGCACATGGGGGTTTCTATTTGACTTTTTTGTAG 719 consensus_5368#1 ------------------------------------------------------------ consensus_5368#0 GATATGCTTCTTTTTTTGTAATTTACCCATATACCTCGTTGAGTTACTGTACTTTATCGA 779 consensus_5368#1 ------------------------------------------------------------ consensus_5368#0 CAAATTGTGTTGTGAAATATTGAA 803 consensus_5368#1 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||