cluster # 5372

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5372 cluster # 5372 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5372#0 length = 951 sequences # 2

consensus_5372#1 length = 312 sequences # 1

consensusID : consensus_5372#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 951
fasta sequence

                              [TAATACAGAACCATCATCATATGTTACTCTGTTCTCCAATACACCTGGAAAGTTGACAAAGGAATTAGTAGACCTTAGAGATGAAGAATTTTCTTGTGGGAGGAATAGGGCTATTGATTTTGTTACATTTACCATGAAATATGGCTGTTTGAGTTACGAAGGGACCAATACTGGATGGAGCAAATCAGAAGTGCCAGTGCTCAGTTTGAAAAGTGATTCTGTTACCAATGATGCTCGACAAACAATAATATCAGTTGATACTAAGTCATCTACGCGTTGGTCACTGGCAATCAATAAACAAGAAATTGATGACTTCACAGTTCATGTGGATTCGGAGAACTTGGTTCCACTGGGTAATAAGAGCGAGATCGATGGGTGGCATACAATCCAGTTTGCTGGTGGTAAGGACTCACCAACAAAATTTCAGCTAACCCTTTTCTGGGCAAGTAATTCCAAGGATGCATTCCCAAAGCAAGTCGAATCAGAAGATCATTCTTTCTTACTAAAACTAAGAACGGATGTGAATAGAGTTACACCGAAGGTTGGCAGGGTTCTCGAGAAGCTTCCAGGATGGTGTGCACCCTTTGGCAAGTCTACTTCTCCTTATACATTGGCTTTCTTGACCGCTCTTCCTGTCAATATTTAGCCATACTTATTCTTTACCAGACTTAGGGTATTCGTAGTGTTTACTTTTTCTAATTTAGATATGCATATCCGATCACACCACCACATAGTTTACACTTATAGCCAACAAATGTACACGAAAATTGCCAGCAACTTCCGTTTAACAGAATCATGTGATAGGGGCCTCAAACATACAGGATAGCCACGGGTTCAAATATGTTTCTTACGAACGAGCAGTTTCATAGTTTCATGTGAAAATGCTGAGATGTAATAATGGCTGTAATAAAGACTGATGCTTTGATTCCTCAAAAAAAAAAAAAAAAGAAA]

[+] EMBL AK071665             [TAATACAGAACCATCATCATATGTTACTCTGTTCTCCAATACACCTGGAAAGTTGACAAAGGAATTAGTAGACCTTAGAGATGAAGAATTTTCTTGTGGGAGGAATAGGGCTATTGATTTTGTTACATTTACCATGAAATATGGCTGTTTGAGTTACGAAGGGACCAATACTGGATGGAGCAAATCAGAAGTGCCAGTGCTCAGTTTGAAAAGTGATTCTGTTACCAATGATGCTCGACAAACAATAATATCAGTTGATACTAAGTCATCTACGCGTTGGTCACTGGCAATCAATAAACAAGAAATTGATGACTTCACAGTTCATGTGGATTCGGAGAACTTGGTTCCACTGGGTAATAAGAGCGAGATCGATGGGTGGCATACAATCCAGTTTGCTGGTGGTAAGGACTCACCAACAAAATTTCAGCTAACCCTTTTCTGGGCAAGTAATTCCAAGGATGCATTCCCAAAGCAAGTCGAATCAGAAGATCATTCTTTCTTACTAAAACTAAGAACGGATGTGAATAGAGTTACACCGAAGGTTGGCAGGGTTCTCGAGAAGCTTCCAGGATGGTGTGCACCCTTTGGCAAGTCTACTTCTCCTTATACATTGGCTTTCTTGACCGCTCTTCCTGTCAATATTTAGCCATACTTATTCTTTACCAGACTTAGGGTATTCGTAGTGTTTACTTTTTCTAATTTAGATATGCATATCCGATCACACCACCACATAGTTTACACTTATAGCCAACAAATGTACACGAAAATTGCCAGCAACTTCCGTTTAACAGAATCATGTGATAGGGGCCTCAAACATACAGGATAGCCACGGGTTCAAATATGTTTCTTACGAACGAGCAGTTTCATAGTTTCATGTGAAAATGCTGAGATGTAATAATGGCTGTAATAAAGACTGATGCT                              ]
[-] EMBL CA759541             [                                                                                                                                                                                                                                                                                         CACTGGCAATCAATAAACAAGAAAGTGATGACTTCCCAGTTCATGTGGATTCGGAGAACTTGGTTCCCCTGGGTAATAAGAGCGAGATCGATGGGTGGCATACAATCCAGTTTGCTGGTGGTAAGGACTCACCAACAAAATTTCAGCTAACCCTTTTCTGGGCAAGTAATTCCAAGGATGCATTCCCAAAGCAAGTCGAATCAGAAGATCATTCTTTCTTACTAAAACTAAGAACGGATGTGAATAGAGTTACACCGAAGGTTGGCAGGGTTCTCGAGAAGCTTCCAGGATGGTGTGCACCCTTTGGCAAGTCTACTTCTCCTTATACATTGGCTTTCTTGACCGCTCTTCCTGTCAATATTTAGCCATACTTATTCTTTACCAGACTTAGGGTATTCGTAGTGTTTACTTTTTCTAATTTAGATATGCATATCCGATCCCACCCCCACATAGTTTACACTTATAGCCAACAAATGTACACGAAAATTGCCAGCAACTTCCGTTTAACAGAATCATGTGATAGGGGCCTCAAACATACAGGATAGCCCCGGGTTCAAATATGTTTCTTACGAACGAGCAGTTTCATAGTTTCATGTGAAAATGCTGAGATGTAATAATGGCTGTAATAAAGACTGATGCTTTGATTCCTCAAAAAAAAAAAAAAAAGAAA]




>consensus_5372#0
TAATACAGAACCATCATCATATGTTACTCTGTTCTCCAATACACCTGGAAAGTTGACAAA
GGAATTAGTAGACCTTAGAGATGAAGAATTTTCTTGTGGGAGGAATAGGGCTATTGATTT
TGTTACATTTACCATGAAATATGGCTGTTTGAGTTACGAAGGGACCAATACTGGATGGAG
CAAATCAGAAGTGCCAGTGCTCAGTTTGAAAAGTGATTCTGTTACCAATGATGCTCGACA
AACAATAATATCAGTTGATACTAAGTCATCTACGCGTTGGTCACTGGCAATCAATAAACA
AGAAATTGATGACTTCACAGTTCATGTGGATTCGGAGAACTTGGTTCCACTGGGTAATAA
GAGCGAGATCGATGGGTGGCATACAATCCAGTTTGCTGGTGGTAAGGACTCACCAACAAA
ATTTCAGCTAACCCTTTTCTGGGCAAGTAATTCCAAGGATGCATTCCCAAAGCAAGTCGA
ATCAGAAGATCATTCTTTCTTACTAAAACTAAGAACGGATGTGAATAGAGTTACACCGAA
GGTTGGCAGGGTTCTCGAGAAGCTTCCAGGATGGTGTGCACCCTTTGGCAAGTCTACTTC
TCCTTATACATTGGCTTTCTTGACCGCTCTTCCTGTCAATATTTAGCCATACTTATTCTT
TACCAGACTTAGGGTATTCGTAGTGTTTACTTTTTCTAATTTAGATATGCATATCCGATC
ACACCACCACATAGTTTACACTTATAGCCAACAAATGTACACGAAAATTGCCAGCAACTT
CCGTTTAACAGAATCATGTGATAGGGGCCTCAAACATACAGGATAGCCACGGGTTCAAAT
ATGTTTCTTACGAACGAGCAGTTTCATAGTTTCATGTGAAAATGCTGAGATGTAATAATG
GCTGTAATAAAGACTGATGCTTTGATTCCTCAAAAAAAAAAAAAAAAGAAA

consensusID : consensus_5372#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 312
fasta sequence

                              [TATTTAGCCATACTTATTCTTTACCAGACTTAGGGTATTCGTAGTGTTTACTTTTTCTAATTTAGATATGCATATCCGATCACACCACCACATAGTTTACACTTATAGCCAACAAATGTACACGAAAATTGCCAGCAACTTCCGTGTTAACAGAATCATGTGATAGGCNCCCTCAAACATACAGGATAGCCACGGGTTCAAATATGTTTCTTACGAACGAGCAGTTTCATAGTTTCATGTGAAAATGCTGAGATGTAATAATGGCTGTAATAAAGACTGATGCTTTGATTCCTCAAAAAGGATTGGCGNCNT]

[+] EMBL BQ906468             [TATTTAGCCATACTTATTCTTTACCAGACTTAGGGTATTCGTAGTGTTTACTTTTTCTAATTTAGATATGCATATCCGATCACACCACCACATAGTTTACACTTATAGCCAACAAATGTACACGAAAATTGCCAGCAACTTCCGTGTTAACAGAATCATGTGATAGGCNCCCTCAAACATACAGGATAGCCACGGGTTCAAATATGTTTCTTACGAACGAGCAGTTTCATAGTTTCATGTGAAAATGCTGAGATGTAATAATGGCTGTAATAAAGACTGATGCTTTGATTCCTCAAAAAGGATTGGCGNCNT]




>consensus_5372#1
TATTTAGCCATACTTATTCTTTACCAGACTTAGGGTATTCGTAGTGTTTACTTTTTCTAA
TTTAGATATGCATATCCGATCACACCACCACATAGTTTACACTTATAGCCAACAAATGTA
CACGAAAATTGCCAGCAACTTCCGTGTTAACAGAATCATGTGATAGGCNCCCTCAAACAT
ACAGGATAGCCACGGGTTCAAATATGTTTCTTACGAACGAGCAGTTTCATAGTTTCATGT
GAAAATGCTGAGATGTAATAATGGCTGTAATAAAGACTGATGCTTTGATTCCTCAAAAAG
GATTGGCGNCNT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5372#0      TAATACAGAACCATCATCATATGTTACTCTGTTCTCCAATACACCTGGAAAGTTGACAAA 60
consensus_5372#1      ------------------------------------------------------------
                                                                                  

consensus_5372#0      GGAATTAGTAGACCTTAGAGATGAAGAATTTTCTTGTGGGAGGAATAGGGCTATTGATTT 120
consensus_5372#1      ------------------------------------------------------------
                                                                                  

consensus_5372#0      TGTTACATTTACCATGAAATATGGCTGTTTGAGTTACGAAGGGACCAATACTGGATGGAG 180
consensus_5372#1      ------------------------------------------------------------
                                                                                  

consensus_5372#0      CAAATCAGAAGTGCCAGTGCTCAGTTTGAAAAGTGATTCTGTTACCAATGATGCTCGACA 240
consensus_5372#1      ------------------------------------------------------------
                                                                                  

consensus_5372#0      AACAATAATATCAGTTGATACTAAGTCATCTACGCGTTGGTCACTGGCAATCAATAAACA 300
consensus_5372#1      ------------------------------------------------------------
                                                                                  

consensus_5372#0      AGAAATTGATGACTTCACAGTTCATGTGGATTCGGAGAACTTGGTTCCACTGGGTAATAA 360
consensus_5372#1      ------------------------------------------------------------
                                                                                  

consensus_5372#0      GAGCGAGATCGATGGGTGGCATACAATCCAGTTTGCTGGTGGTAAGGACTCACCAACAAA 420
consensus_5372#1      ------------------------------------------------------------
                                                                                  

consensus_5372#0      ATTTCAGCTAACCCTTTTCTGGGCAAGTAATTCCAAGGATGCATTCCCAAAGCAAGTCGA 480
consensus_5372#1      ------------------------------------------------------------
                                                                                  

consensus_5372#0      ATCAGAAGATCATTCTTTCTTACTAAAACTAAGAACGGATGTGAATAGAGTTACACCGAA 540
consensus_5372#1      ------------------------------------------------------------
                                                                                  

consensus_5372#0      GGTTGGCAGGGTTCTCGAGAAGCTTCCAGGATGGTGTGCACCCTTTGGCAAGTCTACTTC 600
consensus_5372#1      ------------------------------------------------------------
                                                                                  

consensus_5372#0      TCCTTATACATTGGCTTTCTTGACCGCTCTTCCTGTCAATATTTAGCCATACTTATTCTT 660
consensus_5372#1      ---------------------------------------TATTTAGCCATACTTATTCTT 21
                                                             *********************

consensus_5372#0      TACCAGACTTAGGGTATTCGTAGTGTTTACTTTTTCTAATTTAGATATGCATATCCGATC 720
consensus_5372#1      TACCAGACTTAGGGTATTCGTAGTGTTTACTTTTTCTAATTTAGATATGCATATCCGATC 81
                      ************************************************************

consensus_5372#0      ACACCACCACATAGTTTACACTTATAGCCAACAAATGTACACGAAAATTGCCAGCAACTT 780
consensus_5372#1      ACACCACCACATAGTTTACACTTATAGCCAACAAATGTACACGAAAATTGCCAGCAACTT 141
                      ************************************************************

consensus_5372#0      CCGT-TTAACAGAATCATGTGATAGGGGCC-TCAAACATACAGGATAGCCACGGGTTCAA 838
consensus_5372#1      CCGTGTTAACAGAATCATGTGATAGGCNCCCTCAAACATACAGGATAGCCACGGGTTCAA 201
                      **** *********************  ** *****************************

consensus_5372#0      ATATGTTTCTTACGAACGAGCAGTTTCATAGTTTCATGTGAAAATGCTGAGATGTAATAA 898
consensus_5372#1      ATATGTTTCTTACGAACGAGCAGTTTCATAGTTTCATGTGAAAATGCTGAGATGTAATAA 261
                      ************************************************************

consensus_5372#0      TGGCTGTAATAAAGACTGATGCTTTGATTCCTCAAAAAAAAAAAAAAAAGAAA 951
consensus_5372#1      TGGCTGTAATAAAGACTGATGCTTTGATTCCTCAAAAAGGATTGGCGNCNT-- 312
                      **************************************  *