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Oryza sativa
cluster # 5375 cluster # 5375       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5375#0 length = 1768 sequences # 3  

consensusID : consensus_5375#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1768
fasta sequence
                              [GTTGTTTCGAGGCAGGAGAGAGGCAACCTGCACCTGCCCATGGAGGACTCGGATTAGACTAGAGCACAAGATGGCGTGCTTGACCAAGTATCAGCACGCCACGAATGCAACGAATTAACGCGAGAGATGTTGTATAAGTAGTGTGATTTGATGCCAAGTTCTTGCATCTTGTCAAATAGTATTTGGGCGTGTTGATGATGAGCGTGCAAATGGCGGCGTCGCTACGTGTGATCGTTGTGTTGGTGTGTGTGACGGCGGGCGCCGCCCTCGCCGACGCGGCGGCCGGCGGCGTCCGCGTCGGGCTGACGCGCATCCACTCCGAGCCCGGGGTCACCGCGTCCCAGTTCGTGCGCGACGCCCTGCGCCGCGACATGCACCGGCGCGCGCGGTTCGGGCGGGAGCTCGCGTCGTCGTCGTCGTCGTCTTCTCCGGCGGGCACGGTGTCCGCGCCGACGAGGAAGGACCTGCCCAACGGCGGGGAGTACATCATGACGCTGGCCATCGGCACGCCGCCGCAGTCGTACCCGGCCATCGCCGACACCGGCAGCGACCCCGTCTGGACGCAGTGCGCGCCGTGCGGGGAGCGGTGCTTCAAGCAGCCGAGCCCGCTGTACAACCCGTCGAGCTCGCCGACGTTCCGCGTGCTCCCGTGCAGCAGCGCGCTGAACCTGTGCGCCGCCGAGGCGAGGCTGGCCGGCGCGACCCCGCCGCCGGGGTGCGCGTGCAGGTACAACCAGACGTACGGCACCGGGTGGACGTCCGGCCTGCAGGGCTCGGAGACGTTCACGTTCGGCTCGTCGCCGGCCGACCAGGTGCGCGTCCCCGGCATTGCCTTCGGGTGCAGCAACGCCAGCAGCGACGACTGGAACGGCTCGGCGGGGCTCGTCGGCCTGGGCAGGGGCGGCCTGTCGCTCGTCTCCCAGCTCGCCGCCGGCATGTTCTCCTACTGCCTGACGCCGTTCCAGGACACCAAGAGCAAGAGCACGCTCCTCCTCGGTCCGGCGGCGGCGGCGGCGGCGCTCAACGGCACCGGCGTCCGGTCGACGCCGTTCGTCCCGAGCCCGTCCAAGCCACCGATGAGCACGTACTACTACCTCAACCTCACCGGCATATCCGTCGGCCCGGCGGCGCTGCCCATCCCTCCCGGCGCGTTCACGCTCCGGGCAGACGGCACCGGCGGGCTCATCATCGACTCCGGCACGACGATCACGTCGCTGGTCGACGCGGCGTACAAGAGAGTCCGCGCCGCGGTGCGCTCCCTGGTGAAGCTGCCGGTGACGGACGGGTCGAACGCCACGGGTCTCGACCTGTGCTTCGCGCTGCCGTCGTCGTCGGCGCCGCCGGCGACGCTGCCGAGCATGACGCTCCACTTTGGCGGCGGCGCGGACATGGTGCTCCCGGTGGAGAACTACATGATCCTCGACGGCGGCATGTGGTGCCTGGCGATGCGGAGCCAGACCGACGGCGAGCTCAGCACACTCGGGAACTACCAGCAGCAAAACCTGCACATACTCTACGACGTCCAGAAGGAGA-CGCTGTCGTTTGCTCCGGCCAAGTGCAGCACGCTCTGATCA-GA-CGAGAGCTGTACAGATCGA-TTCATGTGACACGTGTACATTTTTCTGGTTATTAGTAGTATATGTTTCTGGTTATTTTTGTATAGTTTCTACCTCGTTTCTTGAGGGTCTTGATCGGTAGAAATTTCTGTAAAAAGCTTCTTAAAAAAATGTTGTATGAGACTAAAACAGGAAAGATTCAGCCTTTAAAAAAA]

[+] EMBL OSR22641A            [GTTGTTTCGAGGCAGGAGAGAGGCAACCTGCACCTGCCCATGGAGGACTCGGATTAGACTAGAGCACAAGATGGCGTGCTTGACCAAGTATCAGCACGCCACGAATGCAACGAATTAACGCGAGAGATGTTGTATAAGTAGTGTGATTTGATGCCAAGTTCTTGCATCTTGTCAAATAGTATTTGGGCGTGTTGATGATGAGCGTGCAAATGGCGGCGTCGCTACGTGTGATCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK064277             [                                                                                                                                                                              AATAGTATTTGGGCGTGTTGATGATGAGCGTGCAAATGGCGGCGTCGCTACGTGTGATCGTTGTGTTGGTGTGTGTGACGGCGGGCGCCGCCCTCGCCGACGCGGCGGCCGGCGGCGTCCGCGTCGGGCTGACGCGCATCCACTCCGAGCCCGGGGTCACCGCGTCCCAGTTCGTGCGCGACGCCCTGCGCCGCGACATGCACCGGCGCGCGCGGTTCGGGCGGGAGCTCGCGTCGTCGTCGTCGTCGTCTTCTCCGGCGGGCACGGTGTCCGCGCCGACGAGGAAGGACCTGCCCAACGGCGGGGAGTACATCATGACGCTGGCCATCGGCACGCCGCCGCAGTCGTACCCGGCCATCGCCGACACCGGCAGCGACCCCGTCTGGACGCAGTGCGCGCCGTGCGGGGAGCGGTGCTTCAAGCAGCCGAGCCCGCTGTACAACCCGTCGAGCTCGCCGACGTTCCGCGTGCTCCCGTGCAGCAGCGCGCTGAACCTGTGCGCCGCCGAGGCGAGGCTGGCCGGCGCGACCCCGCCGCCGGGGTGCGCGTGCAGGTACAACCAGACGTACGGCACCGGGTGGACGTCCGGCCTGCAGGGCTCGGAGACGTTCACGTTCGGCTCGTCGCCGGCCGACCAGGTGCGCGTCCCCGGCATTGCCTTCGGGTGCAGCAACGCCAGCAGCGACGACTGGAACGGCTCGGCGGGGCTCGTCGGCCTGGGCAGGGGCGGCCTGTCGCTCGTCTCCCAGCTCGCCGCCGGCATGTTCTCCTACTGCCTGACGCCGTTCCAGGACACCAAGAGCAAGAGCACGCTCCTCCTCGGTCCGGCGGCGGCGGCGGCGGCGCTCAACGGCACCGGCGTCCGGTCGACGCCGTTCGTCCCGAGCCCGTCCAAGCCACCGATGAGCACGTACTACTACCTCAACCTCACCGGCATATCCGTCGGCCCGGCGGCGCTGCCCATCCCTCCCGGCGCGTTCACGCTCCGGGCAGACGGCACCGGCGGGCTCATCATCGACTCCGGCACGACGATCACGTCGCTGGTCGACGCGGCGTACAAGAGAGTCCGCGCCGCGGTGCGCTCCCTGGTGAAGCTGCCGGTGACGGACGGGTCGAACGCCACGGGTCTCGACCTGTGCTTCGCGCTGCCGTCGTCGTCGGCGCCGCCGGCGACGCTGCCGAGCATGACGCTCCACTTTGGCGGCGGCGCGGACATGGTGCTCCCGGTGGAGAACTACATGATCCTCGACGGCGGCATGTGGTGCCTGGCGATGCGGAGCCAGACCGACGGCGAGCTCAGCACACTCGGGAACTACCAGCAGCAAAACCTGCACATACTCTACGACGTCCAGAAGGAGA CGCTGTCGTTTGCTCCGGCCAAGTGCAGCACGCTCTGATCA GA CGAGAGCTGTACAGATCGA TTCATGTGACACGTGTACATTTTTCTGGTTATTAGTAGTATATGTTTCTGGTTATTTTTGTATAGTTTCTACCTCGTTTCTTGAGGGTCTTGATCGGTAGAAATTTCTGTAAAAAGCTTCTTAAAAAAATGTTGTATGAGACTAAAACAGGAAAGA                 ]
[+] EMBL BM420841             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CAGAAGGAGACCGCTGTCGTTTGCTCCGGCCAAGTGCAGCACGCTCTGATCACGACCGAGAGTTGTACCGATCGATTTCATGTGACACGTGTACATTTTTCTGGTTATTAGTAGTATATGTTTCTGGTTATTTTTGTATAGTTTCTACCTCGTTTCTTGAGGTTCTNGATCGGTAGAAATTTCTGTAAAAAGCTTCTTAAAAAAATGTTGTATGAGACTANCCCAGGAAAGATTCAGCCTTTAAAAAAA]


>consensus_5375#0 GTTGTTTCGAGGCAGGAGAGAGGCAACCTGCACCTGCCCATGGAGGACTCGGATTAGACT AGAGCACAAGATGGCGTGCTTGACCAAGTATCAGCACGCCACGAATGCAACGAATTAACG CGAGAGATGTTGTATAAGTAGTGTGATTTGATGCCAAGTTCTTGCATCTTGTCAAATAGT ATTTGGGCGTGTTGATGATGAGCGTGCAAATGGCGGCGTCGCTACGTGTGATCGTTGTGT TGGTGTGTGTGACGGCGGGCGCCGCCCTCGCCGACGCGGCGGCCGGCGGCGTCCGCGTCG GGCTGACGCGCATCCACTCCGAGCCCGGGGTCACCGCGTCCCAGTTCGTGCGCGACGCCC TGCGCCGCGACATGCACCGGCGCGCGCGGTTCGGGCGGGAGCTCGCGTCGTCGTCGTCGT CGTCTTCTCCGGCGGGCACGGTGTCCGCGCCGACGAGGAAGGACCTGCCCAACGGCGGGG AGTACATCATGACGCTGGCCATCGGCACGCCGCCGCAGTCGTACCCGGCCATCGCCGACA CCGGCAGCGACCCCGTCTGGACGCAGTGCGCGCCGTGCGGGGAGCGGTGCTTCAAGCAGC CGAGCCCGCTGTACAACCCGTCGAGCTCGCCGACGTTCCGCGTGCTCCCGTGCAGCAGCG CGCTGAACCTGTGCGCCGCCGAGGCGAGGCTGGCCGGCGCGACCCCGCCGCCGGGGTGCG CGTGCAGGTACAACCAGACGTACGGCACCGGGTGGACGTCCGGCCTGCAGGGCTCGGAGA CGTTCACGTTCGGCTCGTCGCCGGCCGACCAGGTGCGCGTCCCCGGCATTGCCTTCGGGT GCAGCAACGCCAGCAGCGACGACTGGAACGGCTCGGCGGGGCTCGTCGGCCTGGGCAGGG GCGGCCTGTCGCTCGTCTCCCAGCTCGCCGCCGGCATGTTCTCCTACTGCCTGACGCCGT TCCAGGACACCAAGAGCAAGAGCACGCTCCTCCTCGGTCCGGCGGCGGCGGCGGCGGCGC TCAACGGCACCGGCGTCCGGTCGACGCCGTTCGTCCCGAGCCCGTCCAAGCCACCGATGA GCACGTACTACTACCTCAACCTCACCGGCATATCCGTCGGCCCGGCGGCGCTGCCCATCC CTCCCGGCGCGTTCACGCTCCGGGCAGACGGCACCGGCGGGCTCATCATCGACTCCGGCA CGACGATCACGTCGCTGGTCGACGCGGCGTACAAGAGAGTCCGCGCCGCGGTGCGCTCCC TGGTGAAGCTGCCGGTGACGGACGGGTCGAACGCCACGGGTCTCGACCTGTGCTTCGCGC TGCCGTCGTCGTCGGCGCCGCCGGCGACGCTGCCGAGCATGACGCTCCACTTTGGCGGCG GCGCGGACATGGTGCTCCCGGTGGAGAACTACATGATCCTCGACGGCGGCATGTGGTGCC TGGCGATGCGGAGCCAGACCGACGGCGAGCTCAGCACACTCGGGAACTACCAGCAGCAAA ACCTGCACATACTCTACGACGTCCAGAAGGAGACGCTGTCGTTTGCTCCGGCCAAGTGCA GCACGCTCTGATCAGACGAGAGCTGTACAGATCGATTCATGTGACACGTGTACATTTTTC TGGTTATTAGTAGTATATGTTTCTGGTTATTTTTGTATAGTTTCTACCTCGTTTCTTGAG GGTCTTGATCGGTAGAAATTTCTGTAAAAAGCTTCTTAAAAAAATGTTGTATGAGACTAA AACAGGAAAGATTCAGCCTTTAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)