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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5379#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1084 fasta sequence
[TTCCCCTCCTCCTGGTTCCCGGCGGCGACTGCGGCGGCGGCGGCGGCGGCGACGCGAACGCCGAGATGAGCGTGTTCGGCGGCGACAGCTGGGCGCGCGACGCGCGGCAGCGGAAGCGCCGCCTCGACGACCTCATGCTCCCCGCCTCGGCAGTGTCCCCATCCTCGTCCTCGCCCGATTCGTTCAGGAGGCTCTCCAACGGCAAGTTCGCCTGCCTCGTCTGCCCCCACCGCCCCGTCCTCGACTCCCCCCTCATGCTCTCCATGCATAATAAAGGTTCACGGCACATTGCAGCAGAATCGAGGCTGAGGGAGAAAGAATTATCAAGACAACAAGAGATCAACAAGAGACTTGCTATTTCTCCAGAAGCTTCCGTTTCAAGTTCTGGTAAGCAACATTATGGTGTTAGGTCTAGTGATATGAAAGAAAAACCATTGATTCAGCAGACAAGACAAGCTATTTTGGAAGCACAGTCCAGCAGATTTATCATCGACAGCGCCAACAAGAAATCTCATGATCTGGAGAGGACATCAAATTCTTCACTGTGTGATTCCCAAGTTACTCCTAGTGTTCCAATGGAAAAATGGAGTGGAGATACTGTGAAAGGAAAAATCTTTGCTGGTGACAGAACTGCAACCAAAATGCTTGCAGAGGAGCAAGCAGATTTCCAAAAACGCCAGGAGCAAGAACTCAAATTCACTGCTTCAGGATGGAAACGAGATGGCCATGGAAGATGGTACAGGGATGAAAATGTGGAGTTTGACTCAGATGAAGATGATCCTAACATATGCCTTGGCTAACCATTTTAAGGGCATTCTGGATGCAACATGATAATGGTTCGACCTTAAACTCAGATTGCTATTTTCAATGCCAGATGAAAAGCATGAGTCCCTCAAAGATTTTTGCTCATCTATGCTGTCAGTCTTCCATACTTACTGGCTACTTGTAACACAGGTATCTTGTCTAACAGGTTGATTATTAGTTGTGCCGTGGTTGTTGTACTGTCTGTTTTCTAATTCTTTTTCCTTGTATGTATTCATAAAATGATGATGTACTATAATGTGCCTACTGAACTGAATTTGTC]
[+] EMBL AK069216 [TTCCCCTCCTCCTGGTTCCCGGCGGCGACTGCGGCGGCGGCGGCGGCGGCGACGCGAACGCCGAGATGAGCGTGTTCGGCGGCGACAGCTGGGCGCGCGACGCGCGGCAGCGGAAGCGCCGCCTCGACGACCTCATGCTCCCCGCCTCGGCAGTGTCCCCATCCTCGTCCTCGCCCGATTCGTTCAGGAGGCTCTCCAACGGCAAGTTCGCCTGCCTCGTCTGCCCCCACCGCCCCGTCCTCGACTCCCCCCTCATGCTCTCCATGCATAATAAAGGTTCACGGCACATTGCAGCAGAATCGAGGCTGAGGGAGAAAGAATTATCAAGACAACAAGAGATCAACAAGAGACTTGCTATTTCTCCAGAAGCTTCCGTTTCAAGTTCTGGTAAGCAACATTATGGTGTTAGGTCTAGTGATATGAAAGAAAAACCATTGATTCAGCAGACAAGACAAGCTATTTTGGAAGCACAGTCCAGCAGATTTATCATCGACAGCGCCAACAAGAAATCTCATGATCTGGAGAGGACATCAAATTCTTCACTGTGTGATTCCCAAGTTACTCCTAGTGTTCCAATGGAAAAATGGAGTGGAGATACTGTGAAAGGAAAAATCTTTGCTGGTGACAGAACTGCAACCAAAATGCTTGCAGAGGAGCAAGCAGATTTCCAAAAACGCCAGGAGCAAGAACTCAAATTCACTGCTTCAGGATGGAAACGAGATGGCCATGGAAGATGGTACAGGGATGAAAATGTGGAGTTTGACTCAGATGAAGATGATCCTAACATATGCCTTGGCTAACCATTTTAAGGGCATTCTGGATGCAACATGATAATGGTTCGACCTTAAACTCAGATTGCTATTTTCAATGCCAGATGAAAAGCATGAGTCCCTCAAAGATTTTTGCTCATCTATGCTGTCAGTCTTCCATACTTACTGGCTACTTGTAACACAGGTATCTTGTCTAACAGGTTGATTATTAGTTGTGCCGTGGTTGTTGTACTGTCTGTTTTCTAATTCTTTTTCCTTGTATGTATTCATAAAATGATGATGTACTATAATGTGCCTACTGAACTGAATTTGTC]
[+] EMBL CK085253 [ CATAATAAAGGTTCACGGCACATTGCAGCAGAATCGAGGCTGAGGGAGAAAGAATTATCAAGACAACAAGAGATCAACAAGAGACTTGCTATTTCTCCAGAAGCTTCCGTTTCAAGTTCTGGTAAGCAACATTATGGTGTTAGGTCTAGTGATATGAAAGAAAAACCATTGATTCAGCAGACAAGACAAGCTATTTTGGAAGCACAGTCCAGCAGATTTATCATCGACAGCGCCAACAAGAAATCTCATGATCTGGAGAGGACATCAAATTCTTCACTGTGTGATTCCCAAGTTACTCCTAGTGTTCCAATGGAAAAATGGAGTGGAGATACTGTGAAAGGAAAAATCTTTGCTGGTGACAGAACTGCAACCAAAATGCTTGCAGAGGAGCAAGCAGATTTCCAAAAACGCCAGGAGCAAGAACTCAAATTCACTGCTTCAGGATGGAAACGAGATGGCCATGGAAGATGGTACAGGGATGAAAATGTGGAGTTTGACTCAGATGAAGATGATCCTAACATATGCCTTG ]
consensusID : consensus_5379#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 885 fasta sequence
[AGAGACTTGCTATTTCTCCAGAAGCTTCCGTTCCAAGTTCTGGTAAGCAACATTATGGTGTTAGGTCTAGTGATATGAAAGAAAAACCATTGATTCAGCAGACAAGACAAGCTATTTTGGAAGCACAGTCCAGCAGATTTATCATCGACAGCGCCAACAAGAAATCTCATGATCTGGAGAGGACATCGAATTCTTCACTGTGTGATTCCCAAGTTACTCCTAGTGTTCCAATGGAAAAATGGAGTGGAGATACTGTGAAAGGAAAATTCTTTGCTGGTGACAGAACTGCAACCAAAATGCTTGCAGAGGAGCAAGCAGATTTCCAAAAACGCCAGGAGCAAGAACTCAAATTCACTGCTTCAGGATGGAAACGAGATGGCCATGGAAGATGGTACAGGGATGAAAATGTGAGTCACATTTTTTTTTGTATGGCTCTTTCTTTTGTATGTTATTCTTAGTAGTCAACTCAATATAGAAAGAATAACAATAGCTTTGCTCATATAGGCTAATTATTCTTTGTATTGCTGTCATGAGATTTAAGTTGCTTTTGCTATCAACAAAAATGAATGATTCCCAATTACTAAGCCTTTTTACACTAAGTCACATAATGCACTTCATATTTTTGTGGCGGACAGTGATGTGGCATCAGTAGAGGTAATGNCCTTTGACCCAAGGCCTCATAGAGGATAGCTCATTTCTCCTCTNCACTGGGCATCCAANTTATACCAGCATCTGTATCACTAACTATTAAATGCAATGGTGGATGGCAGGGGGGAGTTTGACTCAAATGAANATGATCCTACATATGCCTTGGCTAACAATTTNAAGGCATTCTGGATGCACATGGANAANGGNTCGANCTTAAACTCAAATTGCTNTTTTCAA]
[+] EMBL CA763990 [AGAGACTTGCTATTTCTCCAGAAGCTTCCGTTCCAAGTTCTGGTAAGCAACATTATGGTGTTAGGTCTAGTGATATGAAAGAAAAACCATTGATTCAGCAGACAAGACAAGCTATTTTGGAAGCACAGTCCAGCAGATTTATCATCGACAGCGCCAACAAGAAATCTCATGATCTGGAGAGGACATCGAATTCTTCACTGTGTGATTCCCAAGTTACTCCTAGTGTTCCAATGGAAAAATGGAGTGGAGATACTGTGAAAGGAAAATTCTTTGCTGGTGACAGAACTGCAACCAAAATGCTTGCAGAGGAGCAAGCAGATTTCCAAAAACGCCAGGAGCAAGAACTCAAATTCACTGCTTCAGGATGGAAACGAGATGGCCATGGAAGATGGTACAGGGATGAAAATGTGAGTCACATTTTTTTTTGTATGGCTCTTTCTTTTGTATGTTATTCTTAGTAGTCAACTCAATATAGAAAGAATAACAATAGCTTTGCTCATATAGGCTAATTATTCTTTGTATTGCTGTCATGAGATTTAAGTTGCTTTTGCTATCAACAAAAATGAATGATTCCCAATTACTAAGCCTTTTTACACTAAGTCACATAATGCACTTCATATTTTTGTGGCGGACAGTGATGTGGCATCAGTAGAGGTAATGNCCTTTGACCCAAGGCCTCATAGAGGATAGCTCATTTCTCCTCTNCACTGGGCATCCAANTTATACCAGCATCTGTATCACTAACTATTAAATGCAATGGTGGATGGCAGGGGGGAGTTTGACTCAAATGAANATGATCCTACATATGCCTTGGCTAACAATTTNAAGGCATTCTGGATGCACATGGANAANGGNTCGANCTTAAACTCAAATTGCTNTTTTCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5379#0 TTCCCCTCCTCCTGGTTCCCGGCGGCGACTGCGGCGGCGGCGGCGGCGGCGACGCGAACG 60
consensus_5379#1 ------------------------------------------------------------
consensus_5379#0 CCGAGATGAGCGTGTTCGGCGGCGACAGCTGGGCGCGCGACGCGCGGCAGCGGAAGCGCC 120
consensus_5379#1 ------------------------------------------------------------
consensus_5379#0 GCCTCGACGACCTCATGCTCCCCGCCTCGGCAGTGTCCCCATCCTCGTCCTCGCCCGATT 180
consensus_5379#1 ------------------------------------------------------------
consensus_5379#0 CGTTCAGGAGGCTCTCCAACGGCAAGTTCGCCTGCCTCGTCTGCCCCCACCGCCCCGTCC 240
consensus_5379#1 ------------------------------------------------------------
consensus_5379#0 TCGACTCCCCCCTCATGCTCTCCATGCATAATAAAGGTTCACGGCACATTGCAGCAGAAT 300
consensus_5379#1 ------------------------------------------------------------
consensus_5379#0 CGAGGCTGAGGGAGAAAGAATTATCAAGACAACAAGAGATCAACAAGAGACTTGCTATTT 360
consensus_5379#1 ---------------------------------------------AGAGACTTGCTATTT 15
***************
consensus_5379#0 CTCCAGAAGCTTCCGTTTCAAGTTCTGGTAAGCAACATTATGGTGTTAGGTCTAGTGATA 420
consensus_5379#1 CTCCAGAAGCTTCCGTTCCAAGTTCTGGTAAGCAACATTATGGTGTTAGGTCTAGTGATA 75
***************** ******************************************
consensus_5379#0 TGAAAGAAAAACCATTGATTCAGCAGACAAGACAAGCTATTTTGGAAGCACAGTCCAGCA 480
consensus_5379#1 TGAAAGAAAAACCATTGATTCAGCAGACAAGACAAGCTATTTTGGAAGCACAGTCCAGCA 135
************************************************************
consensus_5379#0 GATTTATCATCGACAGCGCCAACAAGAAATCTCATGATCTGGAGAGGACATCAAATTCTT 540
consensus_5379#1 GATTTATCATCGACAGCGCCAACAAGAAATCTCATGATCTGGAGAGGACATCGAATTCTT 195
**************************************************** *******
consensus_5379#0 CACTGTGTGATTCCCAAGTTACTCCTAGTGTTCCAATGGAAAAATGGAGTGGAGATACTG 600
consensus_5379#1 CACTGTGTGATTCCCAAGTTACTCCTAGTGTTCCAATGGAAAAATGGAGTGGAGATACTG 255
************************************************************
consensus_5379#0 TGAAAGGAAAAATCTTTGCTGGTGACAGAACTGCAACCAAAATGCTTGCAGAGGAGCAAG 660
consensus_5379#1 TGAAAGGAAAATTCTTTGCTGGTGACAGAACTGCAACCAAAATGCTTGCAGAGGAGCAAG 315
*********** ************************************************
consensus_5379#0 CAGATTTCCAAAAACGCCAGGAGCAAGAACTCAAATTCACTGCTTCAGGATGGAAACGAG 720
consensus_5379#1 CAGATTTCCAAAAACGCCAGGAGCAAGAACTCAAATTCACTGCTTCAGGATGGAAACGAG 375
************************************************************
consensus_5379#0 ATGGCCATGGAAGATGGTACAGGGATGAAAATGTGGAGTTTGACTCAGATGAAGATGATC 780
consensus_5379#1 ATGGCCATGGAAGATGGTACAGGGATGAAAATGTG-AGTCACATTTTTTTTTGTATGGCT 434
*********************************** *** * * * ***
consensus_5379#0 CTAACATATGCCTTGGCTAACCATTTTAAG-GGCATTCTGGATGCAACATGATAATGG-T 838
consensus_5379#1 CTTTCTTTTGTAT--GTTATTCTTAGTAGTCAACTCAATATAGAAAGAATAACAATAGCT 492
** * * ** * * ** * * ** * * * * ** * *** * *
consensus_5379#0 TCGACCTTAAACTCAGATTGCTATTTTCAATGCCAG-ATGAAAAGCATGAGTCCCT---- 893
consensus_5379#1 TTGCTCATATAGGCTAATTATTCTTTGTATTGCTGTCATGAGATTTAAGTTGCTTTTGCT 552
* * * ** * * *** * *** * *** **** * * * * *
consensus_5379#0 -----CAAAGATTTTTGCTCATCTATGCTGTCAGTCTTCCATACTTACTGGCTACTTGTA 948
consensus_5379#1 ATCAACAAAAATGAATGATTCCCAATTACTAAGCCTTTTTACACTAAGTCACATAATGCA 612
**** ** ** * * ** ** * *** * * * ** *
consensus_5379#0 ACACAGGTATCT-TGTCTAACAG--GTTGATTATTAGTTGTGCCGTGGTTGTTGTACTGT 1005
consensus_5379#1 CTTCATATTTTTGTGGCGGACAGTGATGTGGCATCAGTAGAGGTAATGNCCTTTGACCCA 672
** * * * ** * **** * ** *** * * * ** **
consensus_5379#0 CTGTTTTCTAATT-----CTTTTTCCTTGTATGTATTCATAAAATGATGATGTACTATAA 1060
consensus_5379#1 AGGCCTCATAGAGGATAGCTCATTTCTCCTCTNCACTGG-GCATCCAANTTATACCAGCA 731
* * ** ** ** ** * * * * * * * *** * *
consensus_5379#0 TGTGCCT-ACTGA--ACTGAATTTGTC--------------------------------- 1084
consensus_5379#1 TCTGTATCACTAACTATTAAATGCAATGGTGGATGGCAGGGGGGAGTTTGACTCAAATGA 791
* ** * *** * * * ***
consensus_5379#0 ------------------------------------------------------------
consensus_5379#1 ANATGATCCTACATATGCCTTGGCTAACAATTTNAAGGCATTCTGGATGCACATGGANAA 851
consensus_5379#0 ----------------------------------
consensus_5379#1 NGGNTCGANCTTAAACTCAAATTGCTNTTTTCAA 885
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||