cluster # 5385

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Oryza sativa
cluster # 5385 cluster # 5385 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5385#0 length = 388 sequences # 2

consensus_5385#1 length = 315 sequences # 1

consensusID : consensus_5385#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 388
fasta sequence

                              [CCATCTGAGGCAAGACTCACAGAAGGTCTAGCATTCCCTTGTCATGGCCTTCCTCGTCGTCTGTTGGTCTCAAATCCGTTCCATGGCGACCGTGCGTCAGAGAAGCCATGGCTGACAGAAGGTCCGCAGCCTGAAGGAACGTTGCATCTGAAAAGCCTCCGGCGCAGAGGGCAACCGAGCATCTTTGGCAGTCTCCTATGTCTCCTTGAATCGATTATAGGTAGTACGGCATCTCCGGAATTCATCTATTCATCGGAAGTTCTATGCTGTAGAGTAGTGATCAGTTGATCACCTGTTCAATCTCTTACTATGATCCTATTTCTTCCAATTGTATGTCAAGTATATATAAAAGCCTATTCAAATGAATAATTCTATGTCTCTTGTGGTG]

[+] EMBL AK062361             [CCATCTGAGGCAAGACTCACAGAAGGTCTAGCATTCCCTTGTCATGGCCTTCCTCGTCGTCTGTTGGTCTCAAATCCGTTCCATGGCGACCGTGCGTCAGAGAAGCCATGGCTGACAGAAGGTCCGCAGCCTGAAGGAACGTTGCATCTGAAAAGCCTCCGGCGCAGAGGGCAACCGAGCATCTTTGGCAGTCTCCTATGTCTCCTTGAATCGATTATAGGTAGTACGGCATCTCCGGAATTCATCTATTCATCGGAAGTTCTATGCTGTAGAGTAGTGATCAGTTGATCACCTGTTCAATCTCTTACTATGATCCTATTTCTTCCAATTGTATGTCAAGTATATATAAAAGCCTATTCAAATGAATAATTCTATGTCTCTTGTGGTG]
[+] EMBL C73956               [                                                                 GGTCTCAAATCCGTTCCATGGCGACCGTGCGTCAGAGAAGCCATGGCTGACAGAAGGTCCGCAGCCTGAAGGNACGTTGCATCTGAAAAGCCTCCGGCGCAGAGGGCAACCGAGCATCTTTGGCAGTCTCCTATGTCTCCTTGAATCGATTATAGGTAGTACGGCATCTCCGGAATTNATCTATTCATCGGAAGTTCTATGCTGTAGAGTAGTGATCAGTTGATCANCTGTTCAATCTCTNACTATGATCCTATTTCTTCCANTTGTATGTCAAGTA                                              ]




>consensus_5385#0
CCATCTGAGGCAAGACTCACAGAAGGTCTAGCATTCCCTTGTCATGGCCTTCCTCGTCGT
CTGTTGGTCTCAAATCCGTTCCATGGCGACCGTGCGTCAGAGAAGCCATGGCTGACAGAA
GGTCCGCAGCCTGAAGGAACGTTGCATCTGAAAAGCCTCCGGCGCAGAGGGCAACCGAGC
ATCTTTGGCAGTCTCCTATGTCTCCTTGAATCGATTATAGGTAGTACGGCATCTCCGGAA
TTCATCTATTCATCGGAAGTTCTATGCTGTAGAGTAGTGATCAGTTGATCACCTGTTCAA
TCTCTTACTATGATCCTATTTCTTCCAATTGTATGTCAAGTATATATAAAAGCCTATTCA
AATGAATAATTCTATGTCTCTTGTGGTG

consensusID : consensus_5385#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 315
fasta sequence

                              [GGTCTCAAATCCGTTCCATGGCGACCGTGCGTCAGAGAAGCCATGGCTGACAGAAGGTCCGCAGCCTGAAGGAACGTTGCATCTGAAAACCTCCGGCGCAGAGGGCAACCGAGCATCTTTGGCAGTCTCCTATGTCTCCTTGAATCGATTATAGGTAGTACGGCATCTCCGGAATTCATCTATTCATCGGAAGTTCTATGCTGTAGAGTAGTGATCAGTTGATCACCTGTTCAATCTCTTACTATGATCCTATTTCTTCCAATTGTATGTCAAGTATATATAAAAGCCTATTCAAATGAATAAAAAAAAAAAAAA]

[+] EMBL AU091673             [GGTCTCAAATCCGTTCCATGGCGACCGTGCGTCAGAGAAGCCATGGCTGACAGAAGGTCCGCAGCCTGAAGGAACGTTGCATCTGAAAACCTCCGGCGCAGAGGGCAACCGAGCATCTTTGGCAGTCTCCTATGTCTCCTTGAATCGATTATAGGTAGTACGGCATCTCCGGAATTCATCTATTCATCGGAAGTTCTATGCTGTAGAGTAGTGATCAGTTGATCACCTGTTCAATCTCTTACTATGATCCTATTTCTTCCAATTGTATGTCAAGTATATATAAAAGCCTATTCAAATGAATAAAAAAAAAAAAAA]




>consensus_5385#1
GGTCTCAAATCCGTTCCATGGCGACCGTGCGTCAGAGAAGCCATGGCTGACAGAAGGTCC
GCAGCCTGAAGGAACGTTGCATCTGAAAACCTCCGGCGCAGAGGGCAACCGAGCATCTTT
GGCAGTCTCCTATGTCTCCTTGAATCGATTATAGGTAGTACGGCATCTCCGGAATTCATC
TATTCATCGGAAGTTCTATGCTGTAGAGTAGTGATCAGTTGATCACCTGTTCAATCTCTT
ACTATGATCCTATTTCTTCCAATTGTATGTCAAGTATATATAAAAGCCTATTCAAATGAA
TAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5385#0      CCATCTGAGGCAAGACTCACAGAAGGTCTAGCATTCCCTTGTCATGGCCTTCCTCGTCGT 60
consensus_5385#1      ------------------------------------------------------------
                                                                                  

consensus_5385#0      CTGTTGGTCTCAAATCCGTTCCATGGCGACCGTGCGTCAGAGAAGCCATGGCTGACAGAA 120
consensus_5385#1      -----GGTCTCAAATCCGTTCCATGGCGACCGTGCGTCAGAGAAGCCATGGCTGACAGAA 55
                           *******************************************************

consensus_5385#0      GGTCCGCAGCCTGAAGGAACGTTGCATCTGAAAAGCCTCCGGCGCAGAGGGCAACCGAGC 180
consensus_5385#1      GGTCCGCAGCCTGAAGGAACGTTGCATCTGAAAA-CCTCCGGCGCAGAGGGCAACCGAGC 114
                      ********************************** *************************

consensus_5385#0      ATCTTTGGCAGTCTCCTATGTCTCCTTGAATCGATTATAGGTAGTACGGCATCTCCGGAA 240
consensus_5385#1      ATCTTTGGCAGTCTCCTATGTCTCCTTGAATCGATTATAGGTAGTACGGCATCTCCGGAA 174
                      ************************************************************

consensus_5385#0      TTCATCTATTCATCGGAAGTTCTATGCTGTAGAGTAGTGATCAGTTGATCACCTGTTCAA 300
consensus_5385#1      TTCATCTATTCATCGGAAGTTCTATGCTGTAGAGTAGTGATCAGTTGATCACCTGTTCAA 234
                      ************************************************************

consensus_5385#0      TCTCTTACTATGATCCTATTTCTTCCAATTGTATGTCAAGTATATATAAAAGCCTATTCA 360
consensus_5385#1      TCTCTTACTATGATCCTATTTCTTCCAATTGTATGTCAAGTATATATAAAAGCCTATTCA 294
                      ************************************************************

consensus_5385#0      AATGAATAATTCTATGTCTCTTGTGGTG 388
consensus_5385#1      AATGAATAAAAAAAAAAAAAA------- 315
                      *********    *