cluster # 5388

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Oryza sativa
cluster # 5388 cluster # 5388 Sequences # 3 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5388#0 length = 530 sequences # 3

consensusID : consensus_5388#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 530
fasta sequence

                              [GCCGTTCCTGTTCCTCGACCCCAGGGTCGCGGTGACCGTGGCCGTCGCGGCACCGGTGCCTCGCCGGCCGGCCGTCGTCAGCGTCAAGAAGGAGGTAGCTCGCCTGGACGAGCAGAGCGACACCGGCTCGTCGTCATCCGTGGTGGACGCCTCGCCGGCCGTCGGCGTGGGGCTCGACCTGAACCTGCCGCCGCCGATCGAGGAGGCGTAGGTTGCAGCGCCCGATGACGACGACAAGACCCCCCCACAAATCCCTCGTAGAAAAGTCTAGAGCGACGTGTAATAGTAAGAGGTTAATCGTCCGTTTAATTGCCAGGATTGATCAACTAGGTGTACATAGATCGTGTCCTTTTTGCACGGGGAGATAGGTATGAGGAAAAGGCTACTACTCCCGGTGTTACAGTTCCTTTAAAGAAAGAAGG-AAAAAAACAAGAAAAGAAAAAGAAAACATTTTGTTGTTCGATGTAACATATTGATCATCAATCTCTGATTAATGAGAAATTTACGTTATTTTGTTCTTAAAAAAAAAA]

[+] EMBL CB627679             [GCCGTTCCTGTTCCTCGACCCCAGGGTCGCGGTGACCGTGGCCGTCGCGGCACCGGTGCCTCGCCGGCCGGCCGTCGTCAGCGTCAAGAAGGAGGTAGCTCGCCTGGACGAGCAGAGCGACACCGGCTCGTCGTCATCCGTGGTGGACGCCTCGCCGGCCGTCGGCGTGGGGCTCGACCTGAACCTGCCGCCGCCGATCGAGGAGGCGTAGGTTGCAGCGCCCGATGACGACGACAAGACCCCCCCACAAATCCCTCGTAGAAAAGTCTAGAGCGACGTGTAATA TAAGAGGTTAATCGTCCGTTTAATTGCCAGGATTGATCAACTAGGTGTACATAGATCGTGTCCTTTTTGCACGGGGAGATAGGTATGAGGAAAAGGCTACTACTCCCGGTGTTACAGTTCCTTTAAAGAAAGAAGGAAAAAAAACAAGAAAAGAAAAAGAAAACATTTTGTTGTTCGATGTAACATATTGATCATCAATCTCTGATTAATGAGAAATTTACGTTATTTTG               ]
[+] EMBL AU183275             [                                                                                             GGTAGCTCGCCTGGACGAGCAGAGCGACACCGGCTCGTCGTCATCCGTGGTGGACGCCTCGCCGGCCGTCGGCGTGGGGCTCGACCTGAACCTGCCGCCGCCGATCGAGGAGGCGTAGGTTGCAGCGCCCGATGACGACGACAAGACCCCCCCACAAATCCCTCGTAGAAAAGTCTAGAGCGACGTGTAATAGTAAGAGGTTAATCGTCCGTTTAATTGCCAGGATTGATCAACTAGGTGTACATAGATCGTGTCCTTTTTGCACGGGGAGATAGGTATGAGGAAAAGGCTACTACTCCCGGTGTTACAGTTCCTTTAAAGAAAGAAGG AAAAAAACAAGAAAAGAAAAAGAAAACATTTTGTTGTTCGATGTAACATATTGATCATCAATCTCTGATTAATGAGAAATTTACGTTATTTTGTTCTTAAAAAAA   ]
[+] EMBL OS0638A              [                                                                                                                                                                                                                       CAGCGCCCGATGACGACGACAAGACCCCCCCACAAATCCCTCGTAGAAAAGTCTAGAGCGACGTGTAATAGTAAGAGGTTAATCGTCCGTTTAATTGCCAGGATTGATCAACTAGGTGTACATAGATCGTGTCCTTTTTGCACGGGGAGATAGGTATGAGGAAAAGGCTACTACTCCCGGTGTTACAGTTCCTTTAAAGAAAGAAGG AAAAAAACAAGAAAAGAAAAAGAAAACATTTTGTTGTTCGATGTAACATATTGATCATCAATCTCTGATTAATGAGAAATTTACGTTATTTTGTTCTTAAAAAAAAAA]




>consensus_5388#0
GCCGTTCCTGTTCCTCGACCCCAGGGTCGCGGTGACCGTGGCCGTCGCGGCACCGGTGCC
TCGCCGGCCGGCCGTCGTCAGCGTCAAGAAGGAGGTAGCTCGCCTGGACGAGCAGAGCGA
CACCGGCTCGTCGTCATCCGTGGTGGACGCCTCGCCGGCCGTCGGCGTGGGGCTCGACCT
GAACCTGCCGCCGCCGATCGAGGAGGCGTAGGTTGCAGCGCCCGATGACGACGACAAGAC
CCCCCCACAAATCCCTCGTAGAAAAGTCTAGAGCGACGTGTAATAGTAAGAGGTTAATCG
TCCGTTTAATTGCCAGGATTGATCAACTAGGTGTACATAGATCGTGTCCTTTTTGCACGG
GGAGATAGGTATGAGGAAAAGGCTACTACTCCCGGTGTTACAGTTCCTTTAAAGAAAGAA
GGAAAAAAACAAGAAAAGAAAAAGAAAACATTTTGTTGTTCGATGTAACATATTGATCAT
CAATCTCTGATTAATGAGAAATTTACGTTATTTTGTTCTTAAAAAAAAAA

clustalw multiple alignements is not computed in this case