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Oryza sativa
cluster # 5390 cluster # 5390       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5390#0 length = 1781 sequences # 3  

consensusID : consensus_5390#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1781
fasta sequence
                              [AAAAAAAAAAAAAAAAAATATCCATCCACTCAACCCAACCCAAGCTGGCTGGCAAAACCCTAGAACTCGTTCCCCCCCTTTCGCCTTAAACCTTCTTCTCTTTTAGTACCCTCGGGAAGCCAAAAGCACCTCGTCGGCGGCGGCGGCGGGTGGTGGCCATGGCGGAGCTGAAGCGGCTGTCGGAGAGCCGCGACCTGACGCGGATCGAGCGCATCGGGGCGCACTCCCACATCCGGGGGCTGGGGCTGGACTCCTCGCTGGAGGCCCGCGGCTCGTCGGAGGGGATGGTCGGGCAGCTCCCCGCGCGGCGCGCCGCGGGGCTCATCCTGCAGCTCATCCGCCAGGGGAAGATCGCCGGCCGCGCCGTGCTCCTCGCCGGCCAGCCCGGGACCGGGAAGACCGCCCTCGCCATGGGCATCGCCAAGTCCCTCGGCGCCGAGACGCCCTTCGCCTCCGTCGCCGCGTCCGAGCTCTTCTCCCTCGACCTCTCCAAGACCGAGGCGCTCACCCAGGCCTTCCGCCGCTCCATCGGCGTCCGCATCAAGGAGGAGGCGGAGATCATCGAGGGCGAGGTCGTTGAGATCTCGATCGACCGCCCCGTCTCCGCCGCAGCCGCCGCCGGCAGCTCCGCGCCTTCCGGTGTCGCCGCGGCTGGCAAGACCGGGCGCCTCACGCTCAAGACCACGGACATGGAGACCGTGTACGAGCTCGGCGGCAAGATGATTGAGGCCCTGGGGAAGGAGAAGGTGCAGAGCGGGGATGTGGTTGCGCTCGACAAGGCCTCCGGGAAGGTGACCAAGCTTGGCCGCTCAATCGGGAGGTCGCGGGATTACGATGCTGTTGGTCCTCACACCAAGTTCGTCAAGTGCCCCGAGGGCGAGCTCCAGAAGCGCAAGGAGGTCGTGCATTGTGTCACCTTACATGAAATTGATGTCATCAATAGCCGGACACAAGGTTTTCTTGCACTTTTCACTGGTGACACTGGTGAAATTCGTGCAGAGGTTCGAGAGCAGATTGATACAAAAGTTGCTGAGTGGAGGGAGGAAGGGAAGGCTGAGATTGTCCCTGGTGTTCTGTTTATTGATGAAGTCCACATGCTAGATATCGAATGCTTCTCCTTCCTAAACCGTGCATTGGAAAATGACATGGCTCCAATTCTAGTCATTGCAACTAACCGAGGGATCACATCCATACGTGGGACAAACTACCGATCACCACATGGGATACCACCTGATTTCCTTGATCGTCTGTTAATCATCACGACACAGCCTTACACCGAGGATGATATCCGGAAGATCCTAGACATCAGGTGCGATGAAGAAGATGTGGAAATGTCTGCAGATGCTAAGGTTTTGCTCACAAAGATAGGAGTGGAGACGTCCCTGAGGTATGCTATCCACCTGATCACTTCGGCTGCATTAGCTTGCCAGAAACGCAAGGGTAAGGTTGTGGAGATGGAGGATATAAGCAGGGTCTACCAGCTGTTCCTGGACGTCAAGAGATCGACGCAGTACTTGATGGAGTATCAGAGCCAGTACATGTTCAATGAAGTGCCGGGTGAAGCAGGAGATGATGCCATGCAGTCTTAGTGGGATATTGGTTACAGACTTTACGGTTGGGTTGGTTTTACGGTTCATTATGGATACCCATTGGTCTTCTAGATGAATAGGGGTAAGCGTAAGATGACTTACCCTGACAAACATTGCTCTGTGGGTGCAGTAAATTGTGTTAGTGCTGTAGCTAGATTTAAGAATTGAATGTATCTTGTCTTCATCCCGGTT]

[+] EMBL AK105241             [AAAAAAAAAAAAAAAAAATATCCATCCACTCAACCCAACCCAAGCTGGCTGGCAAAACCCTAGAACTCGTTCCCCCCCTTTCGCCTTAAACCTTCTTCTCTTTTAGTACCCTCGGGAAGCCAAAAGCACCTCGTCGGCGGCGGCGGCGGGTGGTGGCCATGGCGGAGCTGAAGCGGCTGTCGGAGAGCCGCGACCTGACGCGGATCGAGCGCATCGGGGCGCACTCCCACATCCGGGGGCTGGGGCTGGACTCCTCGCTGGAGGCCCGCGGCTCGTCGGAGGGGATGGTCGGGCAGCTCCCCGCGCGGCGCGCCGCGGGGCTCATCCTGCAGCTCATCCGCCAGGGGAAGATCGCCGGCCGCGCCGTGCTCCTCGCCGGCCAGCCCGGGACCGGGAAGACCGCCCTCGCCATGGGCATCGCCAAGTCCCTCGGCGCCGAGACGCCCTTCGCCTCCGTCGCCGCGTCCGAGCTCTTCTCCCTCGACCTCTCCAAGACCGAGGCGCTCACCCAGGCCTTCCGCCGCTCCATCGGCGTCCGCATCAAGGAGGAGGCGGAGATCATCGAGGGCGAGGTCGTTGAGATCTCGATCGACCGCCCCGTCTCCGCCGCAGCCGCCGCCGGCAGCTCCGCGCCTTCCGGTGTCGCCGCGGCTGGCAAGACCGGGCGCCTCACGCTCAAGACCACGGACATGGAGACCGTGTACGAGCTCGGCGGCAAGATGATTGAGGCCCTGGGGAAGGAGAAGGTGCAGAGCGGGGATGTGGTTGCGCTCGACAAGGCCTCCGGGAAGGTGACCAAGCTTGGCCGCTCAATCGGGAGGTCGCGGGATTACGATGCTGTTGGTCCTCACACCAAGTTCGTCAAGTGCCCCGAGGGCGAGCTCCAGAAGCGCAAGGAGGTCGTGCATTGTGTCACCTTACATGAAATTGATGTCATCAATAGCCGGACACAAGGTTTTCTTGCACTTTTCACTGGTGACACTGGTGAAATTCGTGCAGAGGTTCGAGAGCAGATTGATACAAAAGTTGCTGAGTGGAGGGAGGAAGGGAAGGCTGAGATTGTCCCTGGTGTTCTGTTTATTGATGAAGTCCACATGCTAGATATCGAATGCTTCTCCTTCCTAAACCGTGCATTGGAAAATGACATGGCTCCAATTCTAGTCATTGCAACTAACCGAGGGATCACATCCATACGTGGGACAAACTACCGATCACCACATGGGATACCACCTGATTTCCTTGATCGTCTGTTAATCATCACGACACAGCCTTACACCGAGGATGATATCCGGAAGATCCTAGACATCAGGTGCGATGAAGAAGATGTGGAAATGTCTGCAGATGCTAAGGTTTTGCTCACAAAGATAGGAGTGGAGACGTCCCTGAGGTATGCTATCCACCTGATCACTTCGGCTGCATTAGCTTGCCAGAAACGCAAGGGTAAGGTTGTGGAGATGGAGGATATAAGCAGGGTCTACCAGCTGTTCCTGGACGTCAAGAGATCGACGCAGTACTTGATGGAGTATCAGAGCCAGTACATGTTCAATGAAGTGCCGGGTGAAGCAGGAGATGATGCCATGCAGTCTTAGTGGGATATTGGTTACAGACTTTACGGTTGGGTTGGTTTTACGGTTCATTATGGATACCCATTGGTCTTCTAGATGAATAGGGGTAAGCGTAAGATGACTTACCCTGACAAACATTGCTCTGTGGGTGCAGTAAATTGTGTTAGTGCTGTAGCTAGATTTAAGAATTGAATGTATCTTGTCTTCATCCCGGTT]
[+] EMBL CA999970             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CCGGGAAGGTGACCAAGCTTGGCCGCTCAATCGCGTGGTCGCGGGATTACGATGCTGTTGGTCCTCACACCAAGTTCGTCAAGTGCCCCGAGGGCGAGCTCCAGAAGCGCAAGGAGGTCGTGCATTGTGTCACCTTACATGAAATTGATGTCATCAATAGCCGGACACAAGGTTTTCTTGCACTTTTCACTGGTGACACTGGTGAAATTCGTGCAGAGGTTCGAGAGCAGATTGATACAAAAGTTGCTGAGTGGAGGGAGGAAGGGAAGGCTGAGATTGTCCCTGGTGTTCTGTTTATTGATGAAGTCCACATGCTAGATATCGAATGCTTCTCCTTCCTAAACCGTGCATTGGAAAATGACATGGCTCCAATTCTAGTCATTGCAACTAACCGAGGGATCACATCCATACGTGGGACAAACTACCGATCACCACATGGGATACCACCTGATTTCCTTGATCGTCTGTTAATCATCACGACACAGCCTTACACCGAGGATGATATCCGGAAGATCCTAGACATCAGGTGCGATGAAGAAGATGTGGAAATGTCTGCAGATGCTAAGGTTTTGCTCACAAAGATAGGAGTGGAGACGTCCCTGAGGTATGCTATCCACCTGATCACTTCGGCTGCATTAGCTTGCCAGAAACGCAAGGGTAAGGTTGTGGAGATGGAGGATATAAGCAGGGTCTACCAGCTGTTCCTGGACGTCGAGAGATCGACGCAGTACTTGA                                                                                                                                                                                                                                                                       ]
[+] EMBL CB000551             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TCACCTTACATGAAATTGATGTCATCAATAGCCGGACACAAGGTTTTCTTGCACTTTTCACTGGTGACACTGGTGAAATTCGTGCAGAGGTTCGAGAGCAGATTGATACAAAAGTTGCTGAGTGGAGGGAGGAAGGGAAGGCTGAGATTGTCCCTGGTGTTCTGTTTATTGATGAAGTCCACATGCTAGATATCGAATGCTTCTCCTTCCTAAACCGTGCATTGGAAAATGACATGGCTCCAATTCTAGTCATTGCAACTAACCGAGGGATCACATCCATACGTGGGACAAACTACCGATCACCACATGGGATACCACCTGATTTCCTTGATCGTCTGTTAATCATCACGACACAGCCTTACACCGAGGATGATATCCGGAAGATCCTAGACATCAGGTGCGATGAAGAAGATGTGGAAATGTCTGCAGATGCTAAGGTTTTGCTCACAAAGATAGGAGTGGAGACGTCCCTGAGGTATGCTATCCACCTGATCACTTCGGCTGCATTAGCTTGCCAGAAACGCAAGGGTAAGGTTGTGGAGATGGAGGATATAAGCAGGGTCTACCAGCTGTTCCTGGACGTCAAGAGATCGACGCAGTACTTGATGGAGTATCAGAGCCAGTACATGTTCAATGAAGTGCCGGGTGAAGCAGGAGATGATGCCATGCAGTCTTAG                                                                                                                                                                                                ]


>consensus_5390#0 AAAAAAAAAAAAAAAAAATATCCATCCACTCAACCCAACCCAAGCTGGCTGGCAAAACCC TAGAACTCGTTCCCCCCCTTTCGCCTTAAACCTTCTTCTCTTTTAGTACCCTCGGGAAGC CAAAAGCACCTCGTCGGCGGCGGCGGCGGGTGGTGGCCATGGCGGAGCTGAAGCGGCTGT CGGAGAGCCGCGACCTGACGCGGATCGAGCGCATCGGGGCGCACTCCCACATCCGGGGGC TGGGGCTGGACTCCTCGCTGGAGGCCCGCGGCTCGTCGGAGGGGATGGTCGGGCAGCTCC CCGCGCGGCGCGCCGCGGGGCTCATCCTGCAGCTCATCCGCCAGGGGAAGATCGCCGGCC GCGCCGTGCTCCTCGCCGGCCAGCCCGGGACCGGGAAGACCGCCCTCGCCATGGGCATCG CCAAGTCCCTCGGCGCCGAGACGCCCTTCGCCTCCGTCGCCGCGTCCGAGCTCTTCTCCC TCGACCTCTCCAAGACCGAGGCGCTCACCCAGGCCTTCCGCCGCTCCATCGGCGTCCGCA TCAAGGAGGAGGCGGAGATCATCGAGGGCGAGGTCGTTGAGATCTCGATCGACCGCCCCG TCTCCGCCGCAGCCGCCGCCGGCAGCTCCGCGCCTTCCGGTGTCGCCGCGGCTGGCAAGA CCGGGCGCCTCACGCTCAAGACCACGGACATGGAGACCGTGTACGAGCTCGGCGGCAAGA TGATTGAGGCCCTGGGGAAGGAGAAGGTGCAGAGCGGGGATGTGGTTGCGCTCGACAAGG CCTCCGGGAAGGTGACCAAGCTTGGCCGCTCAATCGGGAGGTCGCGGGATTACGATGCTG TTGGTCCTCACACCAAGTTCGTCAAGTGCCCCGAGGGCGAGCTCCAGAAGCGCAAGGAGG TCGTGCATTGTGTCACCTTACATGAAATTGATGTCATCAATAGCCGGACACAAGGTTTTC TTGCACTTTTCACTGGTGACACTGGTGAAATTCGTGCAGAGGTTCGAGAGCAGATTGATA CAAAAGTTGCTGAGTGGAGGGAGGAAGGGAAGGCTGAGATTGTCCCTGGTGTTCTGTTTA TTGATGAAGTCCACATGCTAGATATCGAATGCTTCTCCTTCCTAAACCGTGCATTGGAAA ATGACATGGCTCCAATTCTAGTCATTGCAACTAACCGAGGGATCACATCCATACGTGGGA CAAACTACCGATCACCACATGGGATACCACCTGATTTCCTTGATCGTCTGTTAATCATCA CGACACAGCCTTACACCGAGGATGATATCCGGAAGATCCTAGACATCAGGTGCGATGAAG AAGATGTGGAAATGTCTGCAGATGCTAAGGTTTTGCTCACAAAGATAGGAGTGGAGACGT CCCTGAGGTATGCTATCCACCTGATCACTTCGGCTGCATTAGCTTGCCAGAAACGCAAGG GTAAGGTTGTGGAGATGGAGGATATAAGCAGGGTCTACCAGCTGTTCCTGGACGTCAAGA GATCGACGCAGTACTTGATGGAGTATCAGAGCCAGTACATGTTCAATGAAGTGCCGGGTG AAGCAGGAGATGATGCCATGCAGTCTTAGTGGGATATTGGTTACAGACTTTACGGTTGGG TTGGTTTTACGGTTCATTATGGATACCCATTGGTCTTCTAGATGAATAGGGGTAAGCGTA AGATGACTTACCCTGACAAACATTGCTCTGTGGGTGCAGTAAATTGTGTTAGTGCTGTAG CTAGATTTAAGAATTGAATGTATCTTGTCTTCATCCCGGTT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)