These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5392#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 600 fasta sequence [CGTTCGTCACGTCGGTTGGCACCCTCCCCGCGCCGCGACACGACGCCCGACTCCGACTCGCCGCCGGCTTCTCCCCTTCGCCATCTCTCTCGCGATCTCGCCGCGCCCTCGCCGGAGGAGCGAGGAGGAGATGGAGGCGACCAAGACGCGCGGCACCGGCAATGCGGCTGCGGCGGCGGAGAAGAGGAGGGGGCACGGATCGACGGCGCTGTTCGTGGCGGTGGACTACGCCTTCCTGCTCGCCTTCGCCGGGTTCCTCTCCTACCTCGTCGTCTCCCACCTCCTCCCCTCCGTCGCCTCCTCCTAGATC-TGCTCTGTTTTCCCTGTTTTTGTTATGTTTCTTTTTTTTTTTCGTTTGCTCGATCGGATCCGACGCGGGTGACGTCACTTCAGATCGCCTCGTCGTCGGATGCCATGACATCTCCGATGTGTAATTCCGTGTAATGGGATGAGAAACCAGAGCTGCAGTTTCTTGGAAATTTGGCATGGATTTCAGTTCTTGCTTGCTTGCTCATTTGTTCTTCAATTGTTCATGTCCTGGTCCCGATTGGTTGGCCTCTGGATCTGATACTGTTCTTGTCAATGCAAATTTCTGAATGC] [+] EMBL AK105185 [CGTTCGTCACGTCGGTTGGCACCCTCCCCGCGCCGCGACACGACGCCCGACTCCGACTCGCCGCCGGCTTCTCCCCTTCGCCATCTCTCTCGCGATCTCGCCGCGCCCTCGCCGGAGGAGCGAGGAGGAGATGGAGGCGACCAAGACGCGCGGCACCGGCAATGCGGCTGCGGCGGCGGAGAAGAGGAGGGGGCACGGATCGACGGCGCTGTTCGTGGCGGTGGACTACGCCTTCCTGCTCGCCTTCGCCGGGTTCCTCTCCTACCTCGTCGTCTCCCACCTCCTCCCCTCCGTCGCCTCCTCCTAGATC TGCTCTGTTTTCCCTGTTTTTGTTATGTTTCTTTTTTTTTTTCGTTTGCTCGATCGGATCCGACGCGGGTGACGTCACTTCAGATCGCCTCGTCGTCGGATGCCATGACATCTCCGATGTGTAATTCCGTGTAATGGGATGAGAAACCAGAGCTGCAGTTTCTTGGAAATTTGGCATGGATTTCAGTTCTTGCTTGCTTGCTCATTTGTTCTTCAATTGTTCATGTCCTGGTCCCGATTGGTTGGCCTCTGGATCTGATACTGTTCTTGTCAATGCAAATTTCTGAATGC] [+] EMBL AU091685 [ CGCGATCTCGCCGCGCCCTCGCCGGAGGAGCGAGGAGGAGATGGAGGCGACCAAGACGCGCGGCACCGGCAATGCGGCTGCGGCGGCGGAGAAGAGGAGGGGGCACGGATCGACGGCGCTGTTCGTGGCGGTGGACTACGCCTTCCTGCTCGCCTTCGCCGGGTTCCTCTCCTACCTCGTCGTCTCCCACCTCCTCCCCTCCGTCGCCTCCTCCTAGATCTTGCTCTGTTTTCCCTGTTTTTGTTATGTTTCTTTTTTTTTTTCGTTTGCTCGATCGGATCCGACGCGGGTGACGTCACTTCAGATCG CTCGTCGTCGGATG CATGACATCTCCGATGTGTAATTCCGTGTAATGGGATGAGAAACCAGAGCTGCAG TTCTTNGAAATTTGGCATGGATTCAAGTCCTTGCTgcnaa ] consensusID : consensus_5392#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence [GCCGCGACGACGACGCCCGACTCCGACTCGCCGCCGGCTTCTCCCCTTCGCCATCTCTCTCGCGATCTCGCCGCGCCCTCGCCGGAGGAGCGAGGAGGAGATGGAGGCGACCAAGACGCGCGGCACCGGCAATGCGGCTGCGGCGGCGGAGAAGAGGAGGGGGCACGGATCGACGGCGCTGTTCGTGGCGGTGGACTACGCCTTCCTGCTCGCCTTCGCCGGGTTCCTCTCCTACCTCGTCGTCTCCCACCTCCTCCCCTCCGTCGCCTCCTCCTAGATCTGCTCTGTTTTCCCTGTTTTTGTTATGTTTCTTTTTTTTTTCGTTTGCTCGATCGGATCCGACGCGGGTGACGTCACTTCAGATCGCCTCGTCGTCGGATGCCATGACATCTCCGATGTGTAATTCCGTGTAATGGGATGAGAAACCAGAGCTGCAGTTTCTTGGAAATTTGGCATGGATTTCAGTTCTTGCTTGCTTGCTCAAAANANANAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] [+] EMBL CA757622 [GCCGCGACGACGACGCCCGACTCCGACTCGCCGCCGGCTTCTCCCCTTCGCCATCTCTCTCGCGATCTCGCCGCGCCCTCGCCGGAGGAGCGAGGAGGAGATGGAGGCGACCAAGACGCGCGGCACCGGCAATGCGGCTGCGGCGGCGGAGAAGAGGAGGGGGCACGGATCGACGGCGCTGTTCGTGGCGGTGGACTACGCCTTCCTGCTCGCCTTCGCCGGGTTCCTCTCCTACCTCGTCGTCTCCCACCTCCTCCCCTCCGTCGCCTCCTCCTAGATCTGCTCTGTTTTCCCTGTTTTTGTTATGTTTCTTTTTTTTTTCGTTTGCTCGATCGGATCCGACGCGGGTGACGTCACTTCAGATCGCCTCGTCGTCGGATGCCATGACATCTCCGATGTGTAATTCCGTGTAATGGGATGAGAAACCAGAGCTGCAGTTTCTTGGAAATTTGGCATGGATTTCAGTTCTTGCTTGCTTGCTCAAAANANANAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5392#0 CGTTCGTCACGTCGGTTGGCACCCTCCCCGCGCCGCGAC-ACGACGCCCGACTCCGACTC 59 consensus_5392#1 -------------------------------GCCGCGACGACGACGCCCGACTCCGACTC 29 ******** ******************** consensus_5392#0 GCCGCCGGCTTCTCCCCTTCGCCATCTCTCTCGCGATCTCGCCGCGCCCTCGCCGGAGGA 119 consensus_5392#1 GCCGCCGGCTTCTCCCCTTCGCCATCTCTCTCGCGATCTCGCCGCGCCCTCGCCGGAGGA 89 ************************************************************ consensus_5392#0 GCGAGGAGGAGATGGAGGCGACCAAGACGCGCGGCACCGGCAATGCGGCTGCGGCGGCGG 179 consensus_5392#1 GCGAGGAGGAGATGGAGGCGACCAAGACGCGCGGCACCGGCAATGCGGCTGCGGCGGCGG 149 ************************************************************ consensus_5392#0 AGAAGAGGAGGGGGCACGGATCGACGGCGCTGTTCGTGGCGGTGGACTACGCCTTCCTGC 239 consensus_5392#1 AGAAGAGGAGGGGGCACGGATCGACGGCGCTGTTCGTGGCGGTGGACTACGCCTTCCTGC 209 ************************************************************ consensus_5392#0 TCGCCTTCGCCGGGTTCCTCTCCTACCTCGTCGTCTCCCACCTCCTCCCCTCCGTCGCCT 299 consensus_5392#1 TCGCCTTCGCCGGGTTCCTCTCCTACCTCGTCGTCTCCCACCTCCTCCCCTCCGTCGCCT 269 ************************************************************ consensus_5392#0 CCTCCTAGATCTGCTCTGTTTTCCCTGTTTTTGTTATGTTTCTTTTTTTTTTTCGTTTGC 359 consensus_5392#1 CCTCCTAGATCTGCTCTGTTTTCCCTGTTTTTGTTATGTTTCTTTTTTTTTT-CGTTTGC 328 **************************************************** ******* consensus_5392#0 TCGATCGGATCCGACGCGGGTGACGTCACTTCAGATCGCCTCGTCGTCGGATGCCATGAC 419 consensus_5392#1 TCGATCGGATCCGACGCGGGTGACGTCACTTCAGATCGCCTCGTCGTCGGATGCCATGAC 388 ************************************************************ consensus_5392#0 ATCTCCGATGTGTAATTCCGTGTAATGGGATGAGAAACCAGAGCTGCAGTTTCTTGGAAA 479 consensus_5392#1 ATCTCCGATGTGTAATTCCGTGTAATGGGATGAGAAACCAGAGCTGCAGTTTCTTGGAAA 448 ************************************************************ consensus_5392#0 TTTGGCATGGATTTCAGTTCTTGCTTGCTTGCTCATTTGTTCTTCAATTGTTCATGTCCT 539 consensus_5392#1 TTTGGCATGGATTTCAGTTCTTGCTTGCTTGCTCAA--AANANANAANNNNNNNNNNNNN 506 *********************************** ** consensus_5392#0 GGTCCCGATTGGTTGGCCTCTGGATCTGATACTGTTCTTGTCAATGCAAATTTCTGAATG 599 consensus_5392#1 NNNNNNNNNNNNNNNNNNNNNNN------------------------------------- 529 consensus_5392#0 C 600 consensus_5392#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||