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Oryza sativa
cluster # 5394 cluster # 5394       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5394#0 length = 1283 sequences # 3  

consensusID : consensus_5394#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1283
fasta sequence
                              [CTCCGCAATCTTAGTATCAGCTCAAAGCAGAGTGATCCTGAGCGTCATGTCAGATTTGCCGAGCCTGCATACTCATTTGTTGGAATGCATTGCATCTTTGACGACTGCAAAGCATCAGTTACAATATTGAAATTTGGTCGTGCAAGTTCAGATCTACTTACATATGGTGCTTCTGATGGCAGTTTAACAGTCTGCCAGGTTTCTGACCCACCAACTGTTCTTCAAAAATTAATAGGGCATTCTAAAGATATTACAGTACATAGCTTCGTGCTCCATGGATAAAACTATGAGAGTATGGGAGATCTCAAAAGGCACTTGTATCAGGGTTGTATATGGGGTTTCTTCCCAGCTATGTATCTGCTTTCATCCTGTGAATAATAATTTACTGTTAGTTGGCAATGCAAACAGGGAAATCAATGCCATTAATTTTAGCACTGGGAGAATAGTCAGCAAGCTTACCTTTGATGATGCGGTTACAGCTTTGGATGTTGATCACACTGGACAACTTATTTTTGCTGGGGACGCTCAGGGTTGCATATATACTGTTAGTGTGAATTCACACACGGGTTCATTATCTAGAACTCATAAGAACAAGAGCAATAAAAGCAAATCTCCTGTTACAACCATCCAATACCGCACCTTCTCTCTGGTGGCACGTTGCCCAGTCCTCCTTTCTTGTGTTCAAAATGGAAACTTGTTTTTCTTCAGCATTGCAACAGATTCCAAGGGATACTTGACCCTAATATGCTCCCTAAAATTGGCGTCACCGGTGCAGAGCATCCGTGCTTCTTTCTGTCCACTCCTTTCCCTCGAAAAAGGAGAATTCATTGTCACGGGCAGTGAGGATGCAAATGTTTACTTCTACGATTTGACACGGCCAAAGAACTCGTGTGTAAATAAACTTCAGGGACATGGTTCTCCAGTAATTGGAGTGGCCTGGAGTCATGGGGAAAATTTGCTTGCCTCATCTGATTCAGATGCGACAGTTATTGTATGGAAGCGGGCATAAACTAATTAGAGCGGATTCCACAAAACGAAAGTTGCTTGTATAATGAAGGCATTTTTGGCGCATGTTGTACCTCCCATCATATATTGTTTGTAAGACACAGAAGATGAATCAGCCTTCAATTGTATTTCTACAAAAGTATAGTTCTCCATAGAGTGTACAGCGGTTCTTCAGGTACATCTTACATATATTTTTGTTCAATACTAAAGGGGTAGGAGGTACAGTATAATTCTCTTTTTGTAAACTAAATTTCATGAGTTTAAATGGAGTAGTTGCC]

[+] EMBL CB664551             [CTCCGCAATCTTAGTATCAGCTCAAAGCAGAGTGATCCTGAGCGTCATGTCAGATTTGCCGAGCCTGCATACTCATTTGTTGGAATGCATTGCATCTTTGACGACTGCAAAGCATCAGTTACAATATTGAAATTTGGTCGTGCAAGTTCAGATCTACTTACATATGGTGCTTCTGATGGCAGTTTAACAGTCTGCCAGGTTTCTGACCCACCAACTGTTCTTCAAAAATTAATAGGGCATTCTAAAGATATTACAGTACATAGCTTCGTGCTCCATGGATAAAACTATGAGAGTATGGGAGATCTCAAAAGGCACTTGTATCAGGGTTGTATATGGGGTTTCTTCCCAGCTATGTATCTGCTTTCATCCTGTGAATAATAATTTACTGTTAGTTGGCAATGCAAACAGGGAAATCAATGCCATTAATTTTAGCACTGGGAGAATAGTCAGCAAGCTTACCTTTGATGATGCGGTTACAGCTTTGGATGTTGATCACACTGGACAACTTATTTTTGCTGGGGACGCTCAGGGTTGCATATATACTGTTAGTGTGAATTCACACACGGGTTCATTATCTAGAACTCATAAGAACAAGAGCAATAAAAGCAAATCTCCTGTTACAACCATCCAATACCGCACCTTCTCTCTGGTGGCACGTTGCCCAGTCCTCCTTTCTTGTGTTCAAAATGGAAACTTGTTTTTCTTCAGCATTGCAACAGATTCCAAGGGATACTTGACCCTAATATGCTCCCTANAATTGGCGTCACCGGTGCAGAGCATCCGTGCTTCTTTCTGTCCACTCCTTTCCCTCGAAAAAGGAGAATTCATTGTCACGGGCAGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB000079             [                                                                                                                                                                                                                                                                                                                                                         CCAGCTATGTATCTGCTTTCATCCTGTGAATAACATTTTACTGTTAGTTGGCAATGCAAACAGGGAAATCAATGCCATTAATTTTAGCACTGGGAGAATAGTCAGCAAGCTTACCTTTGATGATGCGGTTACAGCTTTGGATGTTGATCACACTGGACAACTTATTTTTGCTGGGGACGCTCAGGGTTGCATATATACTGTTAGTGTGAATTCACACACGGGTTCATTATCTAGAACTCATAAGAACAAGAGCAATAAAAGCAAATCTCCTGTTACAACCATCCAATACCGCACCTTCTCTCTGGTGGCACGTTGCCCAGTCCTCCTTTCTTGTGTTCAAAATGGAAACTTGTTTTTCTTCAGCATTGCAACAGATTCCAAGGGATACTTGACCCTAATATGCTCCCTAAAATTGGCGTCACCGGTGCAGAGCATCCGTGCTTCTTTCTGTCCACTCCTTTCCCTCGAAAAAGGAGAATTCATTGTCACGGGCAGTGAGGATGCAAATGTTTACTTCTACGATTTGACACGGCCAAAGAACTCGTGTGTAAATAAACTTCAGGGACATGGTTCTCCAGTAATTGGAGTGGCCTGGAGTCATGGGGAAAATTTGCTTGCCTCATCTGATTCAGATGCGACAGTTATTGTATGGAAGCGGGCATAAACTAATTAGAGCGGATTCCACAAAACGAAAGTTGCTTGTATAATGAAGGCATTTTTGGCGCAT                                                                                                                                                                                                                   ]
[-] EMBL CB664552             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TATATACTGTTAGTGTGAATTCACACACGGGTTCATTATCTAGAACTCATAAGAACAAGAGCAATAAAAGCAAATCTCCTGTTACAACCATCCAATACCGCACCTTCTCTCTGGTGGCACGTTGCCCAGTCCTCCTTTCTTGTGTTCAAAATGGAAACTTGTTTTTCTTCAGCATTGCAACAGATTCCAAGGGATACTTGACCCTAATATGCTCCCTAAAATTGGCGTCACCGGTGCAGAGCATCCGTGCTTCTTTCTGTCCACTCCTTTCCCTCGAAAAAGGAGAATTCATTGTCACGGGCAGTGAGGATGCAAATGTTTACTTCTACGATTTGACACGGCCAAAGAACTCGTGTGTAAATAAACTTCAGGGACATGGTTCTCCAGTAATTGGAGTGGCCTGGAGTCATGGGGAAAATTTGCTTGCCTCATCTGATTCAGATGGTACAGTTATTGTATGGAAGCGGGCATAAACTAATTAGAGCGGATTCCACAAAACGAAAGTTGCTTGTATAATGAAGGCATTTTTGGCGCATGTTGTACCTCCCATCATATATTGTTTGTAAGACACAGAAGATGAATCAGCCTTCAATTGTATTTCTACAAAAGTATAGTTCTCCATAGAGTGTACAGCGGTTCTTCAGGTACATCTTACATATATTTTTGTTCAATACTAAAGGGGTAGGAGGTACAGTATAATTCTCTTTTTGTAAACTAAATTTCATGAGTTTAAATGGAGTAGTTGCC]


>consensus_5394#0 CTCCGCAATCTTAGTATCAGCTCAAAGCAGAGTGATCCTGAGCGTCATGTCAGATTTGCC GAGCCTGCATACTCATTTGTTGGAATGCATTGCATCTTTGACGACTGCAAAGCATCAGTT ACAATATTGAAATTTGGTCGTGCAAGTTCAGATCTACTTACATATGGTGCTTCTGATGGC AGTTTAACAGTCTGCCAGGTTTCTGACCCACCAACTGTTCTTCAAAAATTAATAGGGCAT TCTAAAGATATTACAGTACATAGCTTCGTGCTCCATGGATAAAACTATGAGAGTATGGGA GATCTCAAAAGGCACTTGTATCAGGGTTGTATATGGGGTTTCTTCCCAGCTATGTATCTG CTTTCATCCTGTGAATAATAATTTACTGTTAGTTGGCAATGCAAACAGGGAAATCAATGC CATTAATTTTAGCACTGGGAGAATAGTCAGCAAGCTTACCTTTGATGATGCGGTTACAGC TTTGGATGTTGATCACACTGGACAACTTATTTTTGCTGGGGACGCTCAGGGTTGCATATA TACTGTTAGTGTGAATTCACACACGGGTTCATTATCTAGAACTCATAAGAACAAGAGCAA TAAAAGCAAATCTCCTGTTACAACCATCCAATACCGCACCTTCTCTCTGGTGGCACGTTG CCCAGTCCTCCTTTCTTGTGTTCAAAATGGAAACTTGTTTTTCTTCAGCATTGCAACAGA TTCCAAGGGATACTTGACCCTAATATGCTCCCTAAAATTGGCGTCACCGGTGCAGAGCAT CCGTGCTTCTTTCTGTCCACTCCTTTCCCTCGAAAAAGGAGAATTCATTGTCACGGGCAG TGAGGATGCAAATGTTTACTTCTACGATTTGACACGGCCAAAGAACTCGTGTGTAAATAA ACTTCAGGGACATGGTTCTCCAGTAATTGGAGTGGCCTGGAGTCATGGGGAAAATTTGCT TGCCTCATCTGATTCAGATGCGACAGTTATTGTATGGAAGCGGGCATAAACTAATTAGAG CGGATTCCACAAAACGAAAGTTGCTTGTATAATGAAGGCATTTTTGGCGCATGTTGTACC TCCCATCATATATTGTTTGTAAGACACAGAAGATGAATCAGCCTTCAATTGTATTTCTAC AAAAGTATAGTTCTCCATAGAGTGTACAGCGGTTCTTCAGGTACATCTTACATATATTTT TGTTCAATACTAAAGGGGTAGGAGGTACAGTATAATTCTCTTTTTGTAAACTAAATTTCA TGAGTTTAAATGGAGTAGTTGCC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)