cluster # 5408

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Oryza sativa
cluster # 5408 cluster # 5408 Sequences # 3 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5408#0 length = 857 sequences # 3

consensusID : consensus_5408#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 857
fasta sequence

                              [CGGAGGCGGAGGCGGAGGCGGCGCCCTCCCTCCCTCCCTCCCTGTGTCTTCCCCCACTCCTCCCAAAACCCGACGGCCGGCGGCGCGGCGGAGGGCTGCGGCTGAAGGAGTCTGAGAGGGCGGCGCACGGCGGGTAACCACGACCGAAGCATGGAAGCTGGAGGGGTTAGGAGGAGGCGGAGCCCCATGGAGATAGCAGCTTTTTTTACACCGGCGACCGCAGCGGCAGAGGCGGTTGTCGCGATCACTAGGAACTGGGTTTTTTACTTCTGCATGCGTACCATTGTCTTCGCTGGAGGGTTGCTTGCGCTTTTTATTGGCTATGTTATGGCTGCCTATTCCAAGACCTGGCTTGATAGCCTGTCGTTACTGCCCCTTCTATTTGCAGCTGTCATCCTACCTGTGTATGCTGCAGTGGCTA-TCCAGGATGCACGACGCTTGGAGAGAGAGAGGGTGGTTTGGATAGTGCG-CAAGGCACTCGAGATTGAGGGCCTGTAAGAGCGGCCTGTCTTGGTTTAGAGAGAAAGAACAAAGATTAGACACACAGAACAACGAGTTTTTT-T-CCAT-GTTGTTTCTTGGACAGCGT-GATCAGT-GACA-CTTTAGCTTGTAGGGAAGTAGACTAAGGTTGGCAGGAAATTACTCCACTAGAACA-CTGGGGGACAAGATGGAACTTACAGGGTTTTCTTGCTGTGA-CTTGTACA-GCATGTAATGTACCAAATGATGCTCGGATGATCCATGGTGGGTCTGAGATAGTTCAGTGCAAACTGCAAAGACCATAACCTGCTGATAATAAGCATT-TGAAAANGGATCTTGTTGTCGACCGGGTATGTCCCTCACCCCGTAAAAAATNACCGCCA]

[+] EMBL AK108281             [CGGAGGCGGAGGCGGAGGCGGCGCCCTCCCTCCCTCCCTCCCTGTGTCTTCCCCCACTCCTCCCAAAACCCGACGGCCGGCGGCGCGGCGGAGGGCTGCGGCTGAAGGAGTCTGAGAGGGCGGCGCACGGCGGGTAACCACGACCGAAGCATGGAAGCTGGAGGGGTTAGGAGGAGGCGGAGCCCCATGGAGATAGCAGCTTTTTTTACACCGGCGACCGCAGCGGCAGAGGCGGTTGTCGCGATCACTAGGAACTGGGTTTTTTACTTCTGCATGCGTACCATTGTCTTCGCTGGAGGGTTGCTTGCGCTTTTTATTGGCTATGTTATGGCTGCCTATTCCAAGACCTGGCTTGATAGCCTGTCGTTACTGCCCCTTCTATTTGCAGCTGTCATCCTACCTGTGTATGCTGCAGTGGCTA TCCAGGATGCACGACGCTTGGAGAGAGAGAGGGTGGTTTGGATAGTGCG CAAGGCACTCGAGATTGAGGGCCTGTAAGAGCGGCCTGTCTTGGTTTAGAGAGAAAGAACAAAGATTAGACACACAGAACAACGAGTTTTTT T CCAT GTTGTTTCTTGGGCAGCGT GATCAGT GACA CTTTAGCTTGTAGGGAAGTAGACTGAGGTTGGCAGGAAATTACTCCACTAGAACA CTGGGGGACAAGATGGAACTTACAGGGTTTTCTTGCTGTGA CTTGTACA GCATGTAATGTACCAAATGATGCTCGGATGATCCATGGTGGGTCTGAGATAGTTCAGTGCAAACTGCAAAGACCATAACCTGCTGATAATAAGCATT                                                            ]
[+] EMBL CA764176             [                                                                                                                                                                ggGGGGTTAGGAGGAGGCGGAGCCCCATGGAGATAGCAGCCTTTTTTACAGCGGCGACCGCAGCGGCAGAGGCGGTTGTCGCGATCACTAGGAACTGGGTTTTTTACTTCTGCATGCGTACCATTGTCTTCGCTGGAGGGTTGCTTGCGCTTTTTATTGGCTATGTTATGGCTGCCTATTCCAAGACCTGGCTTGATAGCCTGTCGTTACTGCCCCTTCTATTTGCAGCTGTCATCCTACCTGTGTATGCTGCAGTGGCTA TCCAGGATGCACGACGCTTGGAGAGAGAGAGGGTGGTTTGGATAGTGCG CAAGGCACTCGAGATTGAGGGCCTGTAAGAGCGGCCTGTCTTGGTTTAGAGAGAAAGAACAAAGATTAGACACACAGAACAACGAGTTTTTT T CCAT GTTGTTTCTTGGACAGCGT GATCAGT GACA CTTTAGCTTGTAGGGAAGTAGACTAAGGTTGGCAGGAAATTACTCCACTAGAACA CTGGGGGACAAGATGGAACTTACAGGGTTTTCTTGCTGTGA CTTGTACA GCATGTAATGTACCAAATGATGCTCGGATGATCCATGGTGGGTCTGAGATAG                                                                                                         ]
[+] EMBL BQ906213             [                                                                                                                                                                                                                                                                                                                                                                                                                CTGTGTATGCT CAGTGGCTATTCCAGGATGCACGACGCTTGGAGAGAGAGAGGGTGGTTTGGATAGTACGCCAAGGCACTCGAGATTGAGGGCCTGTAAGAGCGGCCTGTCTTGGTTTAGAGAGAAAGAACCAAGATTAGACACACAGAACAACGAGTTTTTTGTCCCATGGTTGTTTCTTGGACAGCGTGGATCAGTGGACACCTTTAGCTTGTAGGGAAGTAGACTAAGGTTGGCAGGAAATTACTCCACTAGAACACCTGGGGGACCAGATGGAACTTACAGGGTTTTCTTGCTGTGACCTTGTACACGCATGTAATGTACC AATGATGCTCGGATGATCCATGGTGGNTCTGAGATAGTTCAGTCCAAACTGCCAAGACCATAACCTGCTGATAATAA CTTTGTGAAAANGGATCTTGTTGTCGACCGGGTATGTCCCTCACCCCGTAAAAAATNACCGCCA]




>consensus_5408#0
CGGAGGCGGAGGCGGAGGCGGCGCCCTCCCTCCCTCCCTCCCTGTGTCTTCCCCCACTCC
TCCCAAAACCCGACGGCCGGCGGCGCGGCGGAGGGCTGCGGCTGAAGGAGTCTGAGAGGG
CGGCGCACGGCGGGTAACCACGACCGAAGCATGGAAGCTGGAGGGGTTAGGAGGAGGCGG
AGCCCCATGGAGATAGCAGCTTTTTTTACACCGGCGACCGCAGCGGCAGAGGCGGTTGTC
GCGATCACTAGGAACTGGGTTTTTTACTTCTGCATGCGTACCATTGTCTTCGCTGGAGGG
TTGCTTGCGCTTTTTATTGGCTATGTTATGGCTGCCTATTCCAAGACCTGGCTTGATAGC
CTGTCGTTACTGCCCCTTCTATTTGCAGCTGTCATCCTACCTGTGTATGCTGCAGTGGCT
ATCCAGGATGCACGACGCTTGGAGAGAGAGAGGGTGGTTTGGATAGTGCGCAAGGCACTC
GAGATTGAGGGCCTGTAAGAGCGGCCTGTCTTGGTTTAGAGAGAAAGAACAAAGATTAGA
CACACAGAACAACGAGTTTTTTTCCATGTTGTTTCTTGGACAGCGTGATCAGTGACACTT
TAGCTTGTAGGGAAGTAGACTAAGGTTGGCAGGAAATTACTCCACTAGAACACTGGGGGA
CAAGATGGAACTTACAGGGTTTTCTTGCTGTGACTTGTACAGCATGTAATGTACCAAATG
ATGCTCGGATGATCCATGGTGGGTCTGAGATAGTTCAGTGCAAACTGCAAAGACCATAAC
CTGCTGATAATAAGCATTTGAAAANGGATCTTGTTGTCGACCGGGTATGTCCCTCACCCC
GTAAAAAATNACCGCCA

clustalw multiple alignements is not computed in this case