These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5412#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1415 fasta sequence [ACCCCATTCGCGGGGCCTCCATCGATGGAGGCCTCTCTCCCGTTTCACCACCACCACCCCGCTGCCTCCTCCACCGCGGCGCATCACGCGGCCCGCCTCACTCCTCCTCCTCCTCCGCGAGACCCGCGTGCCACTGCCCGCTGGGTGCCCCCCGCGGCCGCGCCCGTGCGGAGCCGGAGCCCGGCAAATCTAGGGTTGCCGCCCAATCCTCCCCGACGCCTCCGCCTCCGCCTCGCGCCGCCGAGGATAACCGCTGCAGTCACGGGAGGGCCGCGTCGCCCCCGCCGCCGAGCCCCGCCTCCCTTGGAATGCGCCGGCGGCAGCAGCAGCAGCCTACGACGACCGCGTGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCGCTCTTCGACGGCGCACGCGGGGGTGAGCCTAGTGGGCGAGAACAAAGTTTTGCAAATGTCATCAATTGTGCCGAAGGCGTCCAATATCTTCTGGCATGATTGTGCAGTTGGCCAGGCTGATCGGCAGAAGCTACTGAAGCAGAAAGGTTGCGTTGTTTGGATCACAGGACTTAGTGGTTCAGGTAAAAGTACCCTGGCATGCACATTAGATCGAGAGCTCCATACAAGAGGGAAGCTTTCTTATGTTCTTGATGGTGATAATTTAAGACATGGTTTGAACAAGGATCTTGGCTTTAAGGCGGAAGACCGTGCTGAAAATATACGCAGAGTTGGTGAGGTAGCAAAGCTATTCGCAGATGCAGGCCTAGTATGCATTGCAAGTTTCATATCTCCGTATAGGAGAGACCGTGAGTCTTGTCGTGCATTATTGTCAGATGGTAGCTTTATTGAAGTTTTCTTGAACATGCCCTTGGAATTGTGTGAGTCAAGGGATCCTAAGGGCCTTTATAAGCTTGCTCGTGCAGGAAAAATAAAGGGTTTTACTGGAATTGATGACCCTTATGAATCACCATTAAACTCTGAGATTGAGATCAAAGAAGTGGATGGTGTATGCCCTTCACCATCGGACATGGCAGGACAAGTAGTCACTTATCTAGAGGAGAAAGGGTTTCTGCATGATTAGATGGGATGCATCGATCAGCCGGTAGAGTTTTCTCCTCCATATTAGACTAGTTCAGAATAAGTCAAGCTTTGGCATGTTTTCTGTACTTGTTTTTGTTTAGATTGGTTACATGCTTTGATCTACCCATATTCCTTCTTCACTGCACAGCTAATGGAGCTGTGCAATGACATTCAGGTAAGTTGGAGTAGATTTGTTTTTTTGGGATCCAAAATCATCCCAGTTATTAACAGGCCGTAGAAGATATCCATTTACTTCTGTTCTTACATTGTGGACTTTATACTGTTACTGTTCTTCTACCAGAATCAGTGCCTGGGCTGCGTACATCCATCGTGGATGAAGAGGCTGGATTCCAA] [+] EMBL AK071285 [ACCCCATTCGCGGGGCCTCCATCGATGGAGGCCTCTCTCCCGTTTCACCACCACCACCCCGCTGCCTCCTCCACCGCGGCGCATCACGCGGCCCGCCTCACTCCTCCTCCTCCTCCGCGAGACCCGCGTGCCACTGCCCGCTGGGTGCCCCCCGCGGCCGCGCCCGTGCGGAGCCGGAGCCCGGCAAATCTAGGGTTGCCGCCCAATCCTCCCCGACGCCTCCGCCTCCGCCTCGCGCCGCCGAGGATAACCGCTGCAGTCACGGGAGGGCCGCGTCGCCCCCGCCGCCGAGCCCCGCCTCCCTTGGAATGCGCCGGCGGCAGCAGCAGCAGCCTACGACGACCGCGTGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCGCTCTTCGACGGCGCACGCGGGGGTGAGCCTAGTGGGCGAGAACAAAGTTTTGCAAATGTCATCAATTGTGCCGAAGGCGTCCAATATCTTCTGGCATGATTGTGCAGTTGGCCAGGCTGATCGGCAGAAGCTACTGAAGCAGAAAGGTTGCGTTGTTTGGATCACAGGACTTAGTGGTTCAGGTAAAAGTACCCTGGCATGCACATTAGATCGAGAGCTCCATACAAGAGGGAAGCTTTCTTATGTTCTTGATGGTGATAATTTAAGACATGGTTTGAACAAGGATCTTGGCTTTAAGGCGGAAGACCGTGCTGAAAATATACGCAGAGTTGGTGAGGTAGCAAAGCTATTCGCAGATGCAGGCCTAGTATGCATTGCAAGTTTCATATCTCCGTATAGGAGAGACCGTGAGTCTTGTCGTGCATTATTGTCAGATGGTAGCTTTATTGAAGTTTTCTTGAACATGCCCTTGGAATTGTGTGAGTCAAGGGATCCTAAGGGCCTTTATAAGCTTGCTCGTGCAGGAAAAATAAAGGGTTTTACTGGAATTGATGACCCTTATGAATCACCATTAAACTCTGAGATTGAGATCAAAGAAGTGGATGGTGTATGCCCTTCACCATCGGACATGGCAGGACAAGTAGTCACTTATCTAGAGGAGAAAGGGTTTCTGCATGATTAGATGGGATGCATCGATCAGCCGGTAGAGTTTTCTCCTCCATATTAGACTAGTTCAGAATAAGTCAAGCTTTGGCATGTTTTCTGTACTTGTTTTTGTTTAGATTGGTTACATGCTTTGATCTACCCATATTCCTTCTTCACTGCACAGCTAATGGAGCTGTGCAATGACATTCAGGTAAGTTGGAGTAGATTTGTTTTTTTGGGATCCAAAATCATCCCAGTTATTAACAGGCCGTAGAAGATATCCATTTACTTCTGTTCTTACATTGTGGACTTTATACTGTTACTGTTCTTCTACCAGAATCAGTGCCTGGGCTGCGTACATCCATCGTGGATGAAGAGGCTGGATTCCAA] consensusID : consensus_5412#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 795 fasta sequence [GGACTTAGTGGTTCAGGTAAAAGTACCCTGGCATGCACATTAGATCGAGAGCTCCATACAAGAGGGAAGCTTTCTTATGTTCTTGATGGTGATAATTTAAGACATGGTTTGAACAAGGATCTTGGCTTTAAGGCGGAAGACCGTGCTGAAAATATACGCAGAGTTGGTGAGGTAGCAAAGCTATTCGCAGATGCAGGCCTAGTATGCATTGCAAGTTTCATATCTCCGTATAGGAGAGACCGTGAGTCTTGTCGTGCATTATTGTCAGATGGTAGCTTTATTGAAGTTTTCTTGAACATGCCCTTGGAATTGTGTGAGTCAAGGGATCCTAAGGGCCTTTATAAGCTTGCTCGTGCAGGAAAAATAAAGGGTTTTACTGGAATTGATGACCCTTATGAATCACCATTAAACTCTGAGATTGAGATAAAAGAAGTGGATGGTGTATGCCCTTCACCATCGGACATGGCAGGACAAGTAGTCACTTATCTAGAGGAGAAAGGGTTTTTGCATGATTAGATGGGATGCATCGATCAGCCGGTAGAGTTTTCTCCTCCATATTAGACTAGTTCAGAATAAGTCAAGCTTTGGCATGTTTTCTGTACTTGTTTTTGTTTAGATTGGTTACACGCTTTGATCTACCCATATTCCTTTTTCACTGCACAGCTAATGGAGCTGTGCAATGACATTCAGGTAAGTTGGAGTAGATTTGTTTTTTTGGGATCCAAAATCATCCCAGTTATTAACAGGCCGTAGAAGATATCCATTTACTTCTGTTTTTAAAAAAAAAAAAAAAAA] [-] EMBL CA759382 [GGACTTAGTGGTTCAGGTAAAAGTACCCTGGCATGCACATTAGATCGAGAGCTCCATACAAGAGGGAAGCTTTCTTATGTTCTTGATGGTGATAATTTAAGACATGGTTTGAACAAGGATCTTGGCTTTAAGGCGGAAGACCGTGCTGAAAATATACGCAGAGTTGGTGAGGTAGCAAAGCTATTCGCAGATGCAGGCCTAGTATGCATTGCAAGTTTCATATCTCCGTATAGGAGAGACCGTGAGTCTTGTCGTGCATTATTGTCAGATGGTAGCTTTATTGAAGTTTTCTTGAACATGCCCTTGGAATTGTGTGAGTCAAGGGATCCTAAGGGCCTTTATAAGCTTGCTCGTGCAGGAAAAATAAAGGGTTTTACTGGAATTGATGACCCTTATGAATCACCATTAAACTCTGAGATTGAGATAAAAGAAGTGGATGGTGTATGCCCTTCACCATCGGACATGGCAGGACAAGTAGTCACTTATCTAGAGGAGAAAGGGTTTTTGCATGATTAGATGGGATGCATCGATCAGCCGGTAGAGTTTTCTCCTCCATATTAGACTAGTTCAGAATAAGTCAAGCTTTGGCATGTTTTCTGTACTTGTTTTTGTTTAGATTGGTTACACGCTTTGATCTACCCATATTCCTTTTTCACTGCACAGCTAATGGAGCTGTGCAATGACATTCAGGTAAGTTGGAGTAGATTTGTTTTTTTGGGATCCAAAATCATCCCAGTTATTAACAGGCCGTAGAAGATATCCATTTACTTCTGTTTTTAAAAAAAAAAAAAAAAA] consensusID : consensus_5412#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence [GAGACAAGGGGGAAGCTTTCTTATGTTCTTGATGGTGATAATTTAAGACATGGTTTGAACAAGGATCTTGGCTTTAAGGCGGAAGACCGTGCTGAAAATATACGCAGAGTTGGTGAGGTAGCAAGGCTATTCGCAGATGCAGGCCTAGTATGCATTGCAAGTTCCATATCTCCGTATAGGAGAGACCGTGAGTCTTGTCGTGCATTATTGTCAGATGGTAGCTTTATTGAAGTTTTCTTGAACATGCCCTTGGAATTGTGTGAGTCAAGGGATCCTAAGGGCCTTTATAAGCTTGCTCGTGCAGGAAAAATAAAGGGTTTTACTGGAATTGATGACCCTTATGAATCACCATTAAACTCTGAGATTGAGATAAAAGAAGTGGATGGTGTATGCCCTTCACCATCGGACATGGCAGGACAAGTAGTCACTTATCTAGAGGAGAAAGGGTTTTTGCATGATTAGATGGGATGCATCGATCAGCCGGTAGAGTTTTCTCCTCCATATTAGACTAGTTCAGAATAAGTCAAGCTTTGGCATGTTTTCTGTACTTGTTTTTGTTTAGATTGGTTACATGCTTTGATCTACCCATATTCCTTCTTCACTGCACAGCTAATGGAGCTGTGCAATGACATTCAGGTAAGTTGGAGTAAAAAAAAAAAAAA] [-] EMBL CA759383 [GAGACAAGGGGGAAGCTTTCTTATGTTCTTGATGGTGATAATTTAAGACATGGTTTGAACAAGGATCTTGGCTTTAAGGCGGAAGACCGTGCTGAAAATATACGCAGAGTTGGTGAGGTAGCAAGGCTATTCGCAGATGCAGGCCTAGTATGCATTGCAAGTTCCATATCTCCGTATAGGAGAGACCGTGAGTCTTGTCGTGCATTATTGTCAGATGGTAGCTTTATTGAAGTTTTCTTGAACATGCCCTTGGAATTGTGTGAGTCAAGGGATCCTAAGGGCCTTTATAAGCTTGCTCGTGCAGGAAAAATAAAGGGTTTTACTGGAATTGATGACCCTTATGAATCACCATTAAACTCTGAGATTGAGATAAAAGAAGTGGATGGTGTATGCCCTTCACCATCGGACATGGCAGGACAAGTAGTCACTTATCTAGAGGAGAAAGGGTTTTTGCATGATTAGATGGGATGCATCGATCAGCCGGTAGAGTTTTCTCCTCCATATTAGACTAGTTCAGAATAAGTCAAGCTTTGGCATGTTTTCTGTACTTGTTTTTGTTTAGATTGGTTACATGCTTTGATCTACCCATATTCCTTCTTCACTGCACAGCTAATGGAGCTGTGCAATGACATTCAGGTAAGTTGGAGTAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5412#0 ACCCCATTCGCGGGGCCTCCATCGATGGAGGCCTCTCTCCCGTTTCACCACCACCACCCC 60 consensus_5412#1 ------------------------------------------------------------ consensus_5412#2 ------------------------------------------------------------ consensus_5412#0 GCTGCCTCCTCCACCGCGGCGCATCACGCGGCCCGCCTCACTCCTCCTCCTCCTCCGCGA 120 consensus_5412#1 ------------------------------------------------------------ consensus_5412#2 ------------------------------------------------------------ consensus_5412#0 GACCCGCGTGCCACTGCCCGCTGGGTGCCCCCCGCGGCCGCGCCCGTGCGGAGCCGGAGC 180 consensus_5412#1 ------------------------------------------------------------ consensus_5412#2 ------------------------------------------------------------ consensus_5412#0 CCGGCAAATCTAGGGTTGCCGCCCAATCCTCCCCGACGCCTCCGCCTCCGCCTCGCGCCG 240 consensus_5412#1 ------------------------------------------------------------ consensus_5412#2 ------------------------------------------------------------ consensus_5412#0 CCGAGGATAACCGCTGCAGTCACGGGAGGGCCGCGTCGCCCCCGCCGCCGAGCCCCGCCT 300 consensus_5412#1 ------------------------------------------------------------ consensus_5412#2 ------------------------------------------------------------ consensus_5412#0 CCCTTGGAATGCGCCGGCGGCAGCAGCAGCAGCCTACGACGACCGCGTGAGGAGGAGGAG 360 consensus_5412#1 ------------------------------------------------------------ consensus_5412#2 ------------------------------------------------------------ consensus_5412#0 GAGGAGGAGGAGGAGGAGCGCTCTTCGACGGCGCACGCGGGGGTGAGCCTAGTGGGCGAG 420 consensus_5412#1 ------------------------------------------------------------ consensus_5412#2 ------------------------------------------------------------ consensus_5412#0 AACAAAGTTTTGCAAATGTCATCAATTGTGCCGAAGGCGTCCAATATCTTCTGGCATGAT 480 consensus_5412#1 ------------------------------------------------------------ consensus_5412#2 ------------------------------------------------------------ consensus_5412#0 TGTGCAGTTGGCCAGGCTGATCGGCAGAAGCTACTGAAGCAGAAAGGTTGCGTTGTTTGG 540 consensus_5412#1 ------------------------------------------------------------ consensus_5412#2 ------------------------------------------------------------ consensus_5412#0 ATCACAGGACTTAGTGGTTCAGGTAAAAGTACCCTGGCATGCACATTAGATCGAGAGCTC 600 consensus_5412#1 ------GGACTTAGTGGTTCAGGTAAAAGTACCCTGGCATGCACATTAGATCGAGAGCTC 54 consensus_5412#2 ------------------------------------------------------------ consensus_5412#0 CATACAAGAGGGAAGCTTTCTTATGTTCTTGATGGTGATAATTTAAGACATGGTTTGAAC 660 consensus_5412#1 CATACAAGAGGGAAGCTTTCTTATGTTCTTGATGGTGATAATTTAAGACATGGTTTGAAC 114 consensus_5412#2 GAGACAAGGGGGAAGCTTTCTTATGTTCTTGATGGTGATAATTTAAGACATGGTTTGAAC 60 * ***** *************************************************** consensus_5412#0 AAGGATCTTGGCTTTAAGGCGGAAGACCGTGCTGAAAATATACGCAGAGTTGGTGAGGTA 720 consensus_5412#1 AAGGATCTTGGCTTTAAGGCGGAAGACCGTGCTGAAAATATACGCAGAGTTGGTGAGGTA 174 consensus_5412#2 AAGGATCTTGGCTTTAAGGCGGAAGACCGTGCTGAAAATATACGCAGAGTTGGTGAGGTA 120 ************************************************************ consensus_5412#0 GCAAAGCTATTCGCAGATGCAGGCCTAGTATGCATTGCAAGTTTCATATCTCCGTATAGG 780 consensus_5412#1 GCAAAGCTATTCGCAGATGCAGGCCTAGTATGCATTGCAAGTTTCATATCTCCGTATAGG 234 consensus_5412#2 GCAAGGCTATTCGCAGATGCAGGCCTAGTATGCATTGCAAGTTCCATATCTCCGTATAGG 180 **** ************************************** **************** consensus_5412#0 AGAGACCGTGAGTCTTGTCGTGCATTATTGTCAGATGGTAGCTTTATTGAAGTTTTCTTG 840 consensus_5412#1 AGAGACCGTGAGTCTTGTCGTGCATTATTGTCAGATGGTAGCTTTATTGAAGTTTTCTTG 294 consensus_5412#2 AGAGACCGTGAGTCTTGTCGTGCATTATTGTCAGATGGTAGCTTTATTGAAGTTTTCTTG 240 ************************************************************ consensus_5412#0 AACATGCCCTTGGAATTGTGTGAGTCAAGGGATCCTAAGGGCCTTTATAAGCTTGCTCGT 900 consensus_5412#1 AACATGCCCTTGGAATTGTGTGAGTCAAGGGATCCTAAGGGCCTTTATAAGCTTGCTCGT 354 consensus_5412#2 AACATGCCCTTGGAATTGTGTGAGTCAAGGGATCCTAAGGGCCTTTATAAGCTTGCTCGT 300 ************************************************************ consensus_5412#0 GCAGGAAAAATAAAGGGTTTTACTGGAATTGATGACCCTTATGAATCACCATTAAACTCT 960 consensus_5412#1 GCAGGAAAAATAAAGGGTTTTACTGGAATTGATGACCCTTATGAATCACCATTAAACTCT 414 consensus_5412#2 GCAGGAAAAATAAAGGGTTTTACTGGAATTGATGACCCTTATGAATCACCATTAAACTCT 360 ************************************************************ consensus_5412#0 GAGATTGAGATCAAAGAAGTGGATGGTGTATGCCCTTCACCATCGGACATGGCAGGACAA 1020 consensus_5412#1 GAGATTGAGATAAAAGAAGTGGATGGTGTATGCCCTTCACCATCGGACATGGCAGGACAA 474 consensus_5412#2 GAGATTGAGATAAAAGAAGTGGATGGTGTATGCCCTTCACCATCGGACATGGCAGGACAA 420 *********** ************************************************ consensus_5412#0 GTAGTCACTTATCTAGAGGAGAAAGGGTTTCTGCATGATTAGATGGGATGCATCGATCAG 1080 consensus_5412#1 GTAGTCACTTATCTAGAGGAGAAAGGGTTTTTGCATGATTAGATGGGATGCATCGATCAG 534 consensus_5412#2 GTAGTCACTTATCTAGAGGAGAAAGGGTTTTTGCATGATTAGATGGGATGCATCGATCAG 480 ****************************** ***************************** consensus_5412#0 CCGGTAGAGTTTTCTCCTCCATATTAGACTAGTTCAGAATAAGTCAAGCTTTGGCATGTT 1140 consensus_5412#1 CCGGTAGAGTTTTCTCCTCCATATTAGACTAGTTCAGAATAAGTCAAGCTTTGGCATGTT 594 consensus_5412#2 CCGGTAGAGTTTTCTCCTCCATATTAGACTAGTTCAGAATAAGTCAAGCTTTGGCATGTT 540 ************************************************************ consensus_5412#0 TTCTGTACTTGTTTTTGTTTAGATTGGTTACATGCTTTGATCTACCCATATTCCTTCTTC 1200 consensus_5412#1 TTCTGTACTTGTTTTTGTTTAGATTGGTTACACGCTTTGATCTACCCATATTCCTTTTTC 654 consensus_5412#2 TTCTGTACTTGTTTTTGTTTAGATTGGTTACATGCTTTGATCTACCCATATTCCTTCTTC 600 ******************************** *********************** *** consensus_5412#0 ACTGCACAGCTAATGGAGCTGTGCAATGACATTCAGGTAAGTTGGAGTAGATTTGTTTTT 1260 consensus_5412#1 ACTGCACAGCTAATGGAGCTGTGCAATGACATTCAGGTAAGTTGGAGTAGATTTGTTTTT 714 consensus_5412#2 ACTGCACAGCTAATGGAGCTGTGCAATGACATTCAGGTAAGTTGGAGTAAA--------- 651 ************************************************* * consensus_5412#0 TTGGGATCCAAAATCATCCCAGTTATTAACAGGCCGTAGAAGATATCCATTTACTTCTGT 1320 consensus_5412#1 TTGGGATCCAAAATCATCCCAGTTATTAACAGGCCGTAGAAGATATCCATTTACTTCTGT 774 consensus_5412#2 --AAAAAAAAAAA----------------------------------------------- 662 * **** consensus_5412#0 TCTTACATTGTGGACTTTATACTGTTACTGTTCTTCTACCAGAATCAGTGCCTGGGCTGC 1380 consensus_5412#1 TTTTAAAAAAAAAAAAAAAAA--------------------------------------- 795 consensus_5412#2 ------------------------------------------------------------ consensus_5412#0 GTACATCCATCGTGGATGAAGAGGCTGGATTCCAA 1415 consensus_5412#1 ----------------------------------- consensus_5412#2 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||