These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5413#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1011 fasta sequence [CCCTAGGAAGGACAGACAACGGCGACCATGGACGCCGCCGCGGCCGATCTCGAGGCGCGGCAGCTGCGGATCCTCCGCCGCGTCGCGGACCTCGAGCTCGCCGCGCAGCAGCACCGCCTGGGGGCGCTATCTATCTCCGCGGCGCCCTCGGGGGGCGAGGCGGAGACGGGCGCCACGGAGGCGCGGCTCTCCTCCATCCTGACCGCGCGCGGCGTGCTCGACTTCACCTTCCGGCGCGTGCCCGCCGACTACTACGACCGCCCTCTCGAGGAGCGCCGCGACCTCCTCCGCGCAGATTCAGTCAATCAACTCTGCAAGAGCATCGTCATGGTGAATACACAAGCTGCTGCAGATGTTGTTGACTGCAGCAATCCAAAGAATTCAAAATATTATGTCGTTGTTGTTCAGTATATGGCACGGCTTAATGCAGACAGCATCAAGAACTTCATCTATTCCCTAAACGAGAAGCAGATACCCAAGAAGAGATTTAACATGAGGCTGGCACCAGAAGAGGAGTCACTCAAGCTTACCGGGTTTGTTCACCATGCTGTTACATGCATTGGAATGGAAACAGACATACCGGTTATCATTGATGAATCTATTACCAAGTTAGATAAGGATTTCTTCTGGCTGGGTGGTGGAGAAGTTGACCTCAAGCTTGGGGTGCGGACCTCACAGTTCCTAAATGCATTCAAACCATTTGTGGTGAAGTGTAGTTAGTGATAACTGTACAACGGAAGAGAAACTTTGAATCCATGTGGTTTTACCATCTTGATGAACACATGAGACATCGCCAGGGATGTAAACCAATAGGTTTTTGCTTGGATCTGGGGTTGGGATGTCTGTCTTTTTTAGAGCAGGCGTTTCTGTTCCAGTTGCACTTCTCGCATTAGTTACACTATTTTGGTAAGATTGATGCAGCAAAGGGGGCATTCTTGGGAGAATTGAGATAATTGGCACAAGTGGGCATGTACTAAAAACCTTTGTAGTTCGTGCCTTCAATATACTAGG] [+] EMBL CB663204 [CCCTAGGAAGGACAGACAACGGCGACCATGGACGCCGCCGCGGCCGATCTCGAGGCGCGGCAGCTGCGGATCCTCCGCCGCGTCGCGGACCTCGAGCTCGCCGCGCAGCAGCACCGCCTGGGGGCGCTATCTATCTCCGCGGCGCCCTCGGGGGGCGAGGCGGAGACGGGCGCCACGGAGGCGCGGCTCTCCTCCATCCTGACCGCGCGCGGCGTGCTCGACTTCACCTTCCGGCGCGTGCCCGCCGACTACTACGACCGCCCTCTCGAGGAGCGCCGCGACCTCCTCCGCGCAGATTCAGTCAATCAACTCTGCAAGAGCATCGTCATGGTGAATACACAAGCTGCTGCAGATGTTGTTGACTGCAGCAATCCAAAGAATTCAAAATATTATGTCGTTGTTGTTCAGTATATGGCACGGCTTAATGCAGACAGCATCAAGAACTTCATCTATTCCCTAAACGAGAAGCAGATACCCAAGAAGAGATTTAACATGAGGCTGGCACCAGAAGAGGAGTCACTCAAGCTTACCGGGTTTGTTCACCATGCTGTTACATGCATTGGAATGGAAACAGACATACCGGTTATCATTGATGAATCT ] [+] EMBL AK063236 [ CGACCATGGACGCCGCCGCGGCCGATCTCGAGGCGCGGCAGCTGCGGATCCTCCGCCGCGTCGCGGACCTCGAGCTCGCCGCGCAGCAGCACCGCCTGGGGGCGCTATCTATCTCCGCGGCGCCCTCGGGGGGCGAGGCGGAGACGGGCGCCACGGAGGCGCGGCTCTCCTCCATCCTGACCGCGCGCGGCGTGCTCGACTTCACCTTCCGGCGCGTGCCCGCCGACTACTACGACCGCCCTCTCGAGGAGCGCCGCGACCTCCTCCGCGCAGATTCAGTCAATCAACTCTGCAAGAGCATCGTCATGGTGAATACACAAGCTGCTGCAGATGTTGTTGACTGCAGCAATCCAAAGAATTCAAAATATTATGTCGTTGTTGTTCAGTATATGGCACGGCTTAATGCAGACAGCATCAAGAACTTCATCTATTCCCTAAACGAGAAGCAGATACCCAAGAAGAGATTTAACATGAGGCTGGCACCAGAAGAGGAGTCACTCAAGCTTACAGGGTTTGTTCACAATGCTGTTACATGCATTGGAATGGAAACAGACATACCGGTTATCATTGATGAAGCTATTACCAAGTTAGATAAGGATTTCTTCTGGCTGGGTGGTGGAGAAGTTGACCTCAAGCTTGGGGTGCGGACCTCACAGTTCCTAAATGCATTCAAACCATTTGTGGTGAAGTGTAGTTAGTGATAACTGTACAACGGAAGAGAAACTTTGAATCCATGTGGTTTTACCATCTTGATGAACACATGAGACATCGCCAGGGATGTAAACCAATAGGTTTTTGCTTGGATCTGGGGTTGGGATGTCTGTCTTTTTTAGAGCAGGCGTTTCTGTTCCAGTTGCACTTCTCGCATTAGTTACACTATTTTGGTAAGATTGATGCAGCAAAGGGGGCATTCTTGGGAGAATTGAGATAATTGGCACAAGTGGGCATGTACTAAAAACCTTTGTAGTTCGTGCCTTCAATATACTAGG] consensusID : consensus_5413#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 179 fasta sequence [CTTTTTATGCCAGTTCTATTCTTTAACTCATGTTGTTTACTTGTGTTTGTGCAGTGAGGCTGGCACCAGAAGAGGAGTCACTCAAGCTTACAGGGTTTATTCACAATGCTGTTACATGCATTGGAATGGAAACAGACATACCGGTTATCATTGATGAAGCTATTACCAAGTTAGATAAG] [+] EMBL AA751362 [CTTTTTATGCCAGTTCTATTCTTTAACTCATGTTGTTTACTTGTGTTTGTGCAGTGAGGCTGGCACCAGAAGAGGAGTCACTCAAGCTTACAGGGTTTATTCACAATGCTGTTACATGCATTGGAATGGAAACAGACATACCGGTTATCATTGATGAAGCTATTACCAAGTTAGATAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5413#0 CCCTAGGAAGGACAGACAACGGCGACCATGGACGCCGCCGCGGCCGATCTCGAGGCGCGG 60 consensus_5413#1 ------------------------------------------------------------ consensus_5413#0 CAGCTGCGGATCCTCCGCCGCGTCGCGGACCTCGAGCTCGCCGCGCAGCAGCACCGCCTG 120 consensus_5413#1 ------------------------------------------------------------ consensus_5413#0 GGGGCGCTATCTATCTCCGCGGCGCCCTCGGGGGGCGAGGCGGAGACGGGCGCCACGGAG 180 consensus_5413#1 ------------------------------------------------------------ consensus_5413#0 GCGCGGCTCTCCTCCATCCTGACCGCGCGCGGCGTGCTCGACTTCACCTTCCGGCGCGTG 240 consensus_5413#1 ------------------------------------------------------------ consensus_5413#0 CCCGCCGACTACTACGACCGCCCTCTCGAGGAGCGCCGCGACCTCCTCCGCGCAGATTCA 300 consensus_5413#1 ------------------------------------------------------------ consensus_5413#0 GTCAATCAACTCTGCAAGAGCATCGTCATGGTGAATACACAAGCTGCTGCAGATGTTGTT 360 consensus_5413#1 ------------------------------------------------------------ consensus_5413#0 GACTGCAGCAATCCAAAGAATTCAAAATATTATGTCGTTGTTGTTCAGTATATGGCACGG 420 consensus_5413#1 ------------------------------------------------------------ consensus_5413#0 CTTAATGCAGACAGCATCAAGAACTTCATCTATTCCCTAAACGAGAAGCAGATACCCAAG 480 consensus_5413#1 --------------CTTTTTATGCCAGTTCTATTCTTTAACTCAT-----GTTGTTTACT 41 * * * ******* *** * * * * consensus_5413#0 AAGAGATTTAACATGAGGCTGGCACCAGAAGAGGAGTCACTCAAGCTTACCGGGTTTGTT 540 consensus_5413#1 TGTGTTTGTGCAGTGAGGCTGGCACCAGAAGAGGAGTCACTCAAGCTTACAGGGTTTATT 101 * * ************************************* ****** ** consensus_5413#0 CACCATGCTGTTACATGCATTGGAATGGAAACAGACATACCGGTTATCATTGATGAATCT 600 consensus_5413#1 CACAATGCTGTTACATGCATTGGAATGGAAACAGACATACCGGTTATCATTGATGAAGCT 161 *** ***************************************************** ** consensus_5413#0 ATTACCAAGTTAGATAAGGATTTCTTCTGGCTGGGTGGTGGAGAAGTTGACCTCAAGCTT 660 consensus_5413#1 ATTACCAAGTTAGATAAG------------------------------------------ 179 ****************** consensus_5413#0 GGGGTGCGGACCTCACAGTTCCTAAATGCATTCAAACCATTTGTGGTGAAGTGTAGTTAG 720 consensus_5413#1 ------------------------------------------------------------ consensus_5413#0 TGATAACTGTACAACGGAAGAGAAACTTTGAATCCATGTGGTTTTACCATCTTGATGAAC 780 consensus_5413#1 ------------------------------------------------------------ consensus_5413#0 ACATGAGACATCGCCAGGGATGTAAACCAATAGGTTTTTGCTTGGATCTGGGGTTGGGAT 840 consensus_5413#1 ------------------------------------------------------------ consensus_5413#0 GTCTGTCTTTTTTAGAGCAGGCGTTTCTGTTCCAGTTGCACTTCTCGCATTAGTTACACT 900 consensus_5413#1 ------------------------------------------------------------ consensus_5413#0 ATTTTGGTAAGATTGATGCAGCAAAGGGGGCATTCTTGGGAGAATTGAGATAATTGGCAC 960 consensus_5413#1 ------------------------------------------------------------ consensus_5413#0 AAGTGGGCATGTACTAAAAACCTTTGTAGTTCGTGCCTTCAATATACTAGG 1011 consensus_5413#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||