cluster # 5422

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5422 cluster # 5422 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5422#0 length = 798 sequences # 2

consensus_5422#1 length = 360 sequences # 1

consensusID : consensus_5422#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 798
fasta sequence

                              [TATCACTTGCTGCAAAAGGAGTTGTGTCAAAAGTATTCCCAAAGCCTCGGAGAGCTTGGTTACCAACTGGATGCTTGAAAATACTAGATACTTTACATCAAGCTTTGCCAAGCATGTCCCTTATAGCTTCAGATTTCAGCTATCTTCCTGATGTCAGTATACCTGGCGATAGAGCTCCATTGGTTTCTTCAAAGAAGGACGGGAGGACTTTGGATCATCGCAACTATCTTGAGGCTCAGGGTGACGCAGATATTTTCTTCCCAACCGATTTCTGGCTTTTGGAGAAGATCGACCATGACTGCTCTGGTTTCTCAAAACAGCAAAAGAACCCCGGTGCATTTAAACCAGTTAAGACGAGGAGAACCATCATTCTTGATTCTGCTGCCTTCATGGAAGAGTTTGGACTGCCGTTGAAGACTAGGACCAAAGATGGATATAATCCACTCCTTGATGATTTCAGGAACACCAAGTTCTATCTAAGCGTTCCTACCCATAACAAGAAATAGTCATCATATATTATTTCTTGTTATATTTTAGTCTATTCGTTGGTCAGATCATACTATCCCATGCGGAT-AAAATCGACTTTCGCATTCTTTTAGAGAACAGGAAAGTCTTTTAGTCGACCGAAGAATCGCAAGTTTGATTTGTCCATTTCTGTACTTCACAAGCTGCATGGCTGAAAAGTGGATTATAGTGTACTACACAGGATGTCAGGCCTGCTTCTTTGTGACACGGCTTAATAATTTGAGAACTTCATTTTATAAATAATTTTGAGTCTTTTCTATTGTTAAAAAAAAA]

[+] EMBL CB000995             [TATCACTTGCTGCAAAAGGAGTTGTGTCAAAAGTATTCCCAAAGCCTCGGAGAGCTTGGTTACCAACTGGATGCTTGAAAATACTAGATACTTTACATCAAGCTTTGCCAAGCATGTCCCTTATAGCTTCAGATTTCAGCTATCTTCCTGATGTCAGTATACCTGGCGATAGAGCTCCATTGGTTTCTTCAAAGAAGGACGGGAGGACTTTGGATCATCGCAACTATCTTGAGGCTCAGGGTGACGCAGATATTTTCTTCCCAACCGATTTCTGGCTTTTGGAGAAGATCGACCATGACTGCTCTGGTTTCTCAAAACAGCAAAAGAACCCCGGTGCATTTAAACCAGTTAAGACGAGGAGAACCATCATTCTTGATTCTGCTGCCTTCATGGAAGAGTTTGGACTGCCGTTGAAGACTAGGACCAAAGATGGATATAATCCACTCCTTGATGATTTCAGGAACACCAAGTTCTATCTAAGCGTTCCTACCCATAACAAGAAATAGTCATCATATATTATTTCTTGTTATATTTTAGTCTATTCGTTGGTCAGATCATACTATCCCATGCGGAT AAAATCGAC                                                                                                                                                                                                                       ]
[-] EMBL CF312225             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGTTCTATCTAAGCGTTCCTACCCATAACAAGAAATAGTCATCATATATTATTTCTTGTTATATTTTAGTCTATTCGTTGGTCAGATCATACTATCCCATGCGGATAAAAATCGACTTTCGCATTCTTTTAGAGAACAGGAAAGTCTTTTAGTCGACCGAAGAATCGCAAGTTTGATTTGTCCATTTCTGTACTTCACAAGCTGCATGGCTGAAAAGTGGATTATAGTGTACTACACAGGATGTCAGGCCTGCTTCTTTGTGACACGGCTTAATAATTTGAGAACTTCATTTTATAAATAATTTTGAGTCTTTTCTATTGTTAAAAAAAAA]




>consensus_5422#0
TATCACTTGCTGCAAAAGGAGTTGTGTCAAAAGTATTCCCAAAGCCTCGGAGAGCTTGGT
TACCAACTGGATGCTTGAAAATACTAGATACTTTACATCAAGCTTTGCCAAGCATGTCCC
TTATAGCTTCAGATTTCAGCTATCTTCCTGATGTCAGTATACCTGGCGATAGAGCTCCAT
TGGTTTCTTCAAAGAAGGACGGGAGGACTTTGGATCATCGCAACTATCTTGAGGCTCAGG
GTGACGCAGATATTTTCTTCCCAACCGATTTCTGGCTTTTGGAGAAGATCGACCATGACT
GCTCTGGTTTCTCAAAACAGCAAAAGAACCCCGGTGCATTTAAACCAGTTAAGACGAGGA
GAACCATCATTCTTGATTCTGCTGCCTTCATGGAAGAGTTTGGACTGCCGTTGAAGACTA
GGACCAAAGATGGATATAATCCACTCCTTGATGATTTCAGGAACACCAAGTTCTATCTAA
GCGTTCCTACCCATAACAAGAAATAGTCATCATATATTATTTCTTGTTATATTTTAGTCT
ATTCGTTGGTCAGATCATACTATCCCATGCGGATAAAATCGACTTTCGCATTCTTTTAGA
GAACAGGAAAGTCTTTTAGTCGACCGAAGAATCGCAAGTTTGATTTGTCCATTTCTGTAC
TTCACAAGCTGCATGGCTGAAAAGTGGATTATAGTGTACTACACAGGATGTCAGGCCTGC
TTCTTTGTGACACGGCTTAATAATTTGAGAACTTCATTTTATAAATAATTTTGAGTCTTT
TCTATTGTTAAAAAAAAA

consensusID : consensus_5422#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 360
fasta sequence

                              [TGACTGGACTGAAGGAGTAGAAAGAACACCAAGTTCTATCTAAGCGTTCCTACCCATAACAAGAAATAGTCATCATATATTATTTCTTGTTATATTTTAGTCTATTCGTTGGTCAGATCATACTATCCCATGCGGATAAAAATCGACTTTCGCATTCTTTTAGAGAACAGGAAAGTCTTTTAGTCGACCGAAGAATCGCAAGTTTGATTTGTCCATTTCTGTACTTCACAAGCTGCATGGCTGAAAAGTGGATTATAGTGTACTACACAGGATGTCAGGCCTGCTTCTTTGTGACACGGCTTATAATTTGAGAACTTCATTTTATAAATAATTTTGAGTCTTTTCTATTGTTAAAAAAAA]

[+] EMBL CF312224             [TGACTGGACTGAAGGAGTAGAAAGAACACCAAGTTCTATCTAAGCGTTCCTACCCATAACAAGAAATAGTCATCATATATTATTTCTTGTTATATTTTAGTCTATTCGTTGGTCAGATCATACTATCCCATGCGGATAAAAATCGACTTTCGCATTCTTTTAGAGAACAGGAAAGTCTTTTAGTCGACCGAAGAATCGCAAGTTTGATTTGTCCATTTCTGTACTTCACAAGCTGCATGGCTGAAAAGTGGATTATAGTGTACTACACAGGATGTCAGGCCTGCTTCTTTGTGACACGGCTTATAATTTGAGAACTTCATTTTATAAATAATTTTGAGTCTTTTCTATTGTTAAAAAAAA]




>consensus_5422#1
TGACTGGACTGAAGGAGTAGAAAGAACACCAAGTTCTATCTAAGCGTTCCTACCCATAAC
AAGAAATAGTCATCATATATTATTTCTTGTTATATTTTAGTCTATTCGTTGGTCAGATCA
TACTATCCCATGCGGATAAAAATCGACTTTCGCATTCTTTTAGAGAACAGGAAAGTCTTT
TAGTCGACCGAAGAATCGCAAGTTTGATTTGTCCATTTCTGTACTTCACAAGCTGCATGG
CTGAAAAGTGGATTATAGTGTACTACACAGGATGTCAGGCCTGCTTCTTTGTGACACGGC
TTATAATTTGAGAACTTCATTTTATAAATAATTTTGAGTCTTTTCTATTGTTAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5422#0      TATCACTTGCTGCAAAAGGAGTTGTGTCAAAAGTATTCCCAAAGCCTCGGAGAGCTTGGT 60
consensus_5422#1      ------------------------------------------------------------
                                                                                  

consensus_5422#0      TACCAACTGGATGCTTGAAAATACTAGATACTTTACATCAAGCTTTGCCAAGCATGTCCC 120
consensus_5422#1      ------------------------------------------------------------
                                                                                  

consensus_5422#0      TTATAGCTTCAGATTTCAGCTATCTTCCTGATGTCAGTATACCTGGCGATAGAGCTCCAT 180
consensus_5422#1      ------------------------------------------------------------
                                                                                  

consensus_5422#0      TGGTTTCTTCAAAGAAGGACGGGAGGACTTTGGATCATCGCAACTATCTTGAGGCTCAGG 240
consensus_5422#1      ------------------------------------------------------------
                                                                                  

consensus_5422#0      GTGACGCAGATATTTTCTTCCCAACCGATTTCTGGCTTTTGGAGAAGATCGACCATGACT 300
consensus_5422#1      ------------------------------------------------------------
                                                                                  

consensus_5422#0      GCTCTGGTTTCTCAAAACAGCAAAAGAACCCCGGTGCATTTAAACCAGTTAAGACGAGGA 360
consensus_5422#1      ------------------------------------------------------------
                                                                                  

consensus_5422#0      GAACCATCATTCTTGATTCTGCTGCCTTCATGGAAGAGTTTGGACTGCCGTTGAAGACTA 420
consensus_5422#1      ------------------------------------------------------------
                                                                                  

consensus_5422#0      GGACCAAAGATGGATATAATCCACTCCTTGATGATTTCAGGAACACCAAGTTCTATCTAA 480
consensus_5422#1      ----------------TGA-CTGGACTGAAGGAGTAGAAAGAACACCAAGTTCTATCTAA 43
                                      * * *    *        *   * ********************

consensus_5422#0      GCGTTCCTACCCATAACAAGAAATAGTCATCATATATTATTTCTTGTTATATTTTAGTCT 540
consensus_5422#1      GCGTTCCTACCCATAACAAGAAATAGTCATCATATATTATTTCTTGTTATATTTTAGTCT 103
                      ************************************************************

consensus_5422#0      ATTCGTTGGTCAGATCATACTATCCCATGCGGATAAAA-TCGACTTTCGCATTCTTTTAG 599
consensus_5422#1      ATTCGTTGGTCAGATCATACTATCCCATGCGGATAAAAATCGACTTTCGCATTCTTTTAG 163
                      ************************************** *********************

consensus_5422#0      AGAACAGGAAAGTCTTTTAGTCGACCGAAGAATCGCAAGTTTGATTTGTCCATTTCTGTA 659
consensus_5422#1      AGAACAGGAAAGTCTTTTAGTCGACCGAAGAATCGCAAGTTTGATTTGTCCATTTCTGTA 223
                      ************************************************************

consensus_5422#0      CTTCACAAGCTGCATGGCTGAAAAGTGGATTATAGTGTACTACACAGGATGTCAGGCCTG 719
consensus_5422#1      CTTCACAAGCTGCATGGCTGAAAAGTGGATTATAGTGTACTACACAGGATGTCAGGCCTG 283
                      ************************************************************

consensus_5422#0      CTTCTTTGTGACACGGCTTAATAATTTGAGAACTTCATTTTATAAATAATTTTGAGTCTT 779
consensus_5422#1      CTTCTTTGTGACACGGCTTA-TAATTTGAGAACTTCATTTTATAAATAATTTTGAGTCTT 342
                      ******************** ***************************************

consensus_5422#0      TTCTATTGTTAAAAAAAAA 798
consensus_5422#1      TTCTATTGTTAAAAAAAA- 360
                      ******************