cluster # 5426

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Oryza sativa
cluster # 5426 cluster # 5426 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5426#0 length = 622 sequences # 2

consensus_5426#1 length = 491 sequences # 1

consensusID : consensus_5426#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 622
fasta sequence

                              [AGGTTGCACCAGGAACTCCCAGATGCAATTTTAAGGCAGGTACGGGAGTGTGGTCATATTCCTCATGTTGAAAAGCCAAGTGAAGTGTTAAAACATGTCCTTGATTTTCTCGGAACTGAGAGGAGGCCAGAAAAGGCAGAGCAGGGTTCTTCCTTACCATCGACAGTTGGGACCTGCTGAAACAGAATTGGATCCTTAAGGCTAGGGTGTAGATGGTACATGTACACTGTTGGCTCAATGATGCACATGTGAGTCGGTCGATATGCTTGGGAAGTTGCAATGCTCTGTCCATGCTGTTCGACTCAGAAGATGCTTCACAGTAAAGTTGGAATTTGTTCTCAGCACATGTTCTGTCTTCTGCAAAAGGGGGGACAATAATCCTGTTGGAGGTGGTTCCGAGGCTGTGCCACGGAGATGGAAGAATTGGCATAGGAACATATTGAGCAGGACATCTCTGCTGATCAGCTGCTACTCACTTTTAGGTTGTTAGTCAGATAGTGTTGCAAAGATGTATCATTCCTTCCTCTGTTCTTTCTCGCTGAACATGTTGAATAAACTTCAAGTATGTTTAAGACTGTCTAGACTGGGAATATGAAAGCTATGTTTATCTTTGGGCGAGNAA]

[+] EMBL AK062687             [AGGTTGCACCAGGAACTCCCAGATGCAATTTTAAGGCAGGTACGGGAGTGTGGTCATATTCCTCATGTTGAAAAGCCAAGTGAAGTGTTAAAACATGTCCTTGATTTTCTCGGAACTGAGAGGAGGCCAGAAAAGGCAGAGCAGGGTTCTTCCTTACCATCGACAGTTGGGACCTGCTGAAACAGAATTGGATCCTTAAGGCTAGGGTGTAGATGGTACATGTACACTGTTGGCTCAATGATGCACATGTGAGTCGGTCGATATGCTTGGGAAGTTGCAATGCTCTGTCCATGCTGTTCGACTCAGAAGATGCTTCACAGTAAAGTTGGAATTTGTTCTCAGCACATGTTCTGTCTTCTGCAAAAGGGGGGACAATAATCCTGTTGGAGGTGGTTCCGAGGCTGTGCCACGGAGATGGAAGAATTGGCATAGGAACATATTGAGCAGGACATCTCTGCTGATCAGCTGCTACTCACTTTTAGGTTGTTAGTCAGATAGTGTTGCAAAGATGTATCATTCCTTCCTCTGTTCTTTCTCGCTGAACATGTTGAATAAACTTCAAGTATGTTTAAGACTGTCTAGACTGGGAATATGAAAGCTA                     ]
[+] EMBL CA765397             [                                                                                                                                                                                                                                                                                                                                                                                                               GGCTGTGCCNCGGAGATGGAAGAATTGGCATAGGAACATATTGAGCAGGACATCTCTGCTGATCAGCTGCTACTCACTTTTAGGTTGTTAGTCAGATAGTGTTGCAAAGATGTATCATTCCTTCCTCTGTTCTTTCTCGCTGAACATGTTGAATAAACTTCAAGTNTGTTTAAGACTGTCTAGACTGGGAATATGAAAGCTATGTTTATCTTTGGGCGAGNAA]




>consensus_5426#0
AGGTTGCACCAGGAACTCCCAGATGCAATTTTAAGGCAGGTACGGGAGTGTGGTCATATT
CCTCATGTTGAAAAGCCAAGTGAAGTGTTAAAACATGTCCTTGATTTTCTCGGAACTGAG
AGGAGGCCAGAAAAGGCAGAGCAGGGTTCTTCCTTACCATCGACAGTTGGGACCTGCTGA
AACAGAATTGGATCCTTAAGGCTAGGGTGTAGATGGTACATGTACACTGTTGGCTCAATG
ATGCACATGTGAGTCGGTCGATATGCTTGGGAAGTTGCAATGCTCTGTCCATGCTGTTCG
ACTCAGAAGATGCTTCACAGTAAAGTTGGAATTTGTTCTCAGCACATGTTCTGTCTTCTG
CAAAAGGGGGGACAATAATCCTGTTGGAGGTGGTTCCGAGGCTGTGCCACGGAGATGGAA
GAATTGGCATAGGAACATATTGAGCAGGACATCTCTGCTGATCAGCTGCTACTCACTTTT
AGGTTGTTAGTCAGATAGTGTTGCAAAGATGTATCATTCCTTCCTCTGTTCTTTCTCGCT
GAACATGTTGAATAAACTTCAAGTATGTTTAAGACTGTCTAGACTGGGAATATGAAAGCT
ATGTTTATCTTTGGGCGAGNAA

consensusID : consensus_5426#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 491
fasta sequence

                              [CATGTACACCTGTTGGGCTCCAATGATGCACCACTGAGTCCGGTCGATATGCTTGCGAAGTTGCAATGCTCTGTCCACTGCTGTTCGACTCACGAAGATGCTTCCACCACGTAAAGTTGGAAATTTGTTCTCACGCCACCACTGTTCTGTCTTCTGCACAAAAGGGGGGACCACATAATTCCTGTTTGGACGCGTGGTTCCGACGGCCTGTTGCCCACCGCGANGATTGGAACGAACTTGGCACATAGGAACACTATTTGGAGCAGGACATCTGTCTGCTGGATGCAGCTGGCTGACTGCACTGTTTGAGGTGTGTGTACGTGCAGGATGAGTGGTGTGGCACAAAGGATGGTATCCATTGCCTTGCCCTGCTGGTGTGCTGTGTTCTGCNGCTGGAACACATGGTTGGAATGAAACCTTGCCAAGTGATGGTGTTAAGACCTGTGCTAGACTGGGAATATGAAAGCTATGTTTATCCTTTAAAAAAAAAA]

[+] EMBL BQ906042             [CATGTACACCTGTTGGGCTCCAATGATGCACCACTGAGTCCGGTCGATATGCTTGCGAAGTTGCAATGCTCTGTCCACTGCTGTTCGACTCACGAAGATGCTTCCACCACGTAAAGTTGGAAATTTGTTCTCACGCCACCACTGTTCTGTCTTCTGCACAAAAGGGGGGACCACATAATTCCTGTTTGGACGCGTGGTTCCGACGGCCTGTTGCCCACCGCGANGATTGGAACGAACTTGGCACATAGGAACACTATTTGGAGCAGGACATCTGTCTGCTGGATGCAGCTGGCTGACTGCACTGTTTGAGGTGTGTGTACGTGCAGGATGAGTGGTGTGGCACAAAGGATGGTATCCATTGCCTTGCCCTGCTGGTGTGCTGTGTTCTGCNGCTGGAACACATGGTTGGAATGAAACCTTGCCAAGTGATGGTGTTAAGACCTGTGCTAGACTGGGAATATGAAAGCTATGTTTATCCTTTAAAAAAAAAA]




>consensus_5426#1
CATGTACACCTGTTGGGCTCCAATGATGCACCACTGAGTCCGGTCGATATGCTTGCGAAG
TTGCAATGCTCTGTCCACTGCTGTTCGACTCACGAAGATGCTTCCACCACGTAAAGTTGG
AAATTTGTTCTCACGCCACCACTGTTCTGTCTTCTGCACAAAAGGGGGGACCACATAATT
CCTGTTTGGACGCGTGGTTCCGACGGCCTGTTGCCCACCGCGANGATTGGAACGAACTTG
GCACATAGGAACACTATTTGGAGCAGGACATCTGTCTGCTGGATGCAGCTGGCTGACTGC
ACTGTTTGAGGTGTGTGTACGTGCAGGATGAGTGGTGTGGCACAAAGGATGGTATCCATT
GCCTTGCCCTGCTGGTGTGCTGTGTTCTGCNGCTGGAACACATGGTTGGAATGAAACCTT
GCCAAGTGATGGTGTTAAGACCTGTGCTAGACTGGGAATATGAAAGCTATGTTTATCCTT
TAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5426#0      AGGTTGCACCAGGAACTCCCAGATGCAATTTTAAGGCAGGTACGGGAGTGTGGTCATATT 60
consensus_5426#1      ------------------------------------------------------------
                                                                                  

consensus_5426#0      CCTCATGTTGAAAAGCCAAGTGAAGTGTTAAAACATGTCCTTGATTTTCTCGGAACTGAG 120
consensus_5426#1      ------------------------------------------------------------
                                                                                  

consensus_5426#0      AGGAGGCCAGAAAAGGCAGAGCAGGGTTCTTCCTTACCATCGACAGTTGGGACCTGCTGA 180
consensus_5426#1      ------------------------------------------------------------
                                                                                  

consensus_5426#0      AACAGAATTGGATCCTTAAGGCTAGGGTGTAGATGGTACATGTACAC-TGTTGG--CTCA 237
consensus_5426#1      --------------------------------------CATGTACACCTGTTGGGCTCCA 22
                                                            ********* ******    **

consensus_5426#0      ATGATGCACATGTGAGTC-GGTCGATATGCTTGGGAAGTTGCAATGCTCTGTCCA-TGCT 295
consensus_5426#1      ATGATGCACCACTGAGTCCGGTCGATATGCTTGCGAAGTTGCAATGCTCTGTCCACTGCT 82
                      *********   ****** ************** ********************* ****

consensus_5426#0      GTTCGACTCA-GAAGATGCTTCA--CA-GTAAAGTTGGAA-TTTGTTCTCAGCACA---- 346
consensus_5426#1      GTTCGACTCACGAAGATGCTTCCACCACGTAAAGTTGGAAATTTGTTCTCACGCCACCAC 142
                      ********** ***********   ** ************ **********   **    

consensus_5426#0      TGTTCTGTCTTCTGCA--AAAGGGGGGACAATAA---TCCTGTTGGAG---GTGGTTCCG 398
consensus_5426#1      TGTTCTGTCTTCTGCACAAAAGGGGGGACCACATAATTCCTGTTTGGACGCGTGGTTCCG 202
                      ****************  *********** * *    ******* *     *********

consensus_5426#0      AGG--CTGT-----GCCACGGAGATGGAA--GAATTGG---CATAGGAACA-TATT--GA 443
consensus_5426#1      ACGGCCTGTTGCCCACCGCGANGATTGGAACGAACTTGGCACATAGGAACACTATTTGGA 262
                      * *  ****      ** **  *** * *  *** * *   ********** ****  **

consensus_5426#0      GCAGGACATCT--CTGCTGAT--CAGCTG-----CTACTCACTTTTAGGT---------T 485
consensus_5426#1      GCAGGACATCTGTCTGCTGGATGCAGCTGGCTGACTGCACTGTTTGAGGTGTGTGTACGT 322
                      ***********  ******    ******     ** * *  *** ****         *

consensus_5426#0      GTTAGTCAGATAGTGTTGCA---AAGATG-TATC-ATT-CCTTCCTCTGTT--------- 530
consensus_5426#1      GCAGGATGAGTGGTGTGGCACAAAGGATGGTATCCATTGCCTTGCCCTGCTGGTGTGCTG 382
                      *   *     * **** ***   * **** **** *** **** * *** *         

consensus_5426#0      --CTTTCTCGCTGAA---CATGTT--GAAT-AAACTT---CAAGTA----TGTTTAAGAC 575
consensus_5426#1      TGTTCTGCNGCTGGAACACATGGTTGGAATGAAACCTTGCCAAGTGATGGTGTTAAGACC 442
                         * *   **** *   **** *  **** **** *   *****     **** *   *

consensus_5426#0      TGT-CTAGACTGGGAATATGAAAGCTATGTTTATCTTTGGGCGAGNAA- 622
consensus_5426#1      TGTGCTAGACTGGGAATATGAAAGCTATGTTTATCCTTTAAAAAAAAAA 491
                      *** ******************************* **     *  **