cluster # 5436

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Oryza sativa
cluster # 5436 cluster # 5436 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5436#0 length = 687 sequences # 2

consensus_5436#1 length = 355 sequences # 1

consensusID : consensus_5436#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 687
fasta sequence

                              [TTTTTTTTTTTTTATTGGAAATATTGAAAATGGATTTATTTTTTT--TAAAAAAACTATTGTACATATTAAAAATATTGTAAATATTTACAATATGTGTTTGTAATGTCATATTTTCAAATAGACAAATTTATAATGGCTGGATCCAATTAACCCTACTTAGTACTAATCCTATACCCAAATCAAGTTTCACCATAATGTCATCCAAAAGAAAACAAATTAACTAATTCTCCATCAATCGCATTAATTTTAGATGTATGTGTTGGCGACGTCGGCAAGGTGCCCAGCCAGCTCCTCCGGCGCGGAGAGCATGGCCATGTGGTCGCCGGCGTCCATCACCCTCACCTCCGCCACCTCGGTGTTGGCGACCATCCACCGTTGGTGCTCCTGGACGATGGCCATGTCATTCTCGACCACCACATACACCTTTCTCACGGCGCCGTACCTGTCCTCCCTGAACGCCGACCGACGTCCCAACTCATCCACGTACAAGGAGCTTGCTCGAACCAAGCTCTTCACAAGCGTGTACTCCTGTGTTCCGGTGAGCTTAACTGCCATACCTTCCTTTCCGGAACTCCGTCCCGAACAGGAATGGAAGCGGGACTCCATTTGCATCTACCACGCTGCTCCACCCTGACCGAATCTTACCAAAGCGTATCGTACCCTAAAACCTATAGAGAAGGCCCACAG]

[+] EMBL CA763200             [TTTTTTTTTTTTTATTGGAAATATTGAAAATGGATTTATTTTTTT  TAAAAAAACTATTGTACATATTAAAAATATTGTAAATATTTACAATATGTGTTTGTAATGTCATATTTTCAAATAGACAAATTTATAATGGCTGGATCCAATTAACCCTACTTAGTACTAATCCTATACCCAAATCAAGTTTCACCATAATGTCATCCAAAAGAAAACAAATTAACTAATTCTCCATCAATCGCATTAATTTTAGATGTATGTGTTGGCGACGTCGGCAAGGTGCCCAGCCAGCTCCTCCGGCGCGGAGAGCATGGCCATGTGGTCGCCGGCGTCCATCACCCTCACCTCCGCCACCTCGGTGTTGGCGACCATCCACCGTTGGTGCTCCTGGACGATGGCCATGTCATTCTCGACCACCACATACACCTTTCTCACGGCGCCGTACCTGTCCTCCCTGAACGCCGACCGACGTCCCAACTCATCCACGTACAAGGAGCTTGCTCGAACCAAGCTCTTCACAAGCGTGTACTCCTGTGTTCCGGTGAGCTTAACTGCCATACCTTCCTTTCCGGAACTCCGTCCCGAACAGGAATGGAAGCGGGACTCCATTTGCATCTACCACGCTGCTCCACCCTGACCGAATCTTACCAAAGCGTATCGTACCCTAAAACCTATAGAGAAGGCCCACAG]
[-] EMBL AU174250             [                                ttTTTTTTTTTTTGNTAAAAAAACTATTGTACATATTAAAAATATTGTAAATATTTACAATATGTGTTTGTAATGTCATATTTTCAAATAGACAAATTTATAATGGCTGGATCCAATTAACCCTACTTAGTACTAATCCTATACCCAAATCAAGTTTCACCATAATGTCATCCAAAAGAAAACAAATTAACTAATTCTCCATCAATCGCATTAATTTTANATGTATGTGTTGGCGACGTCGGCGAGGTGCCCAGCCAGCTCCTCCGGCGCGGAGAGCATGGCCATGTGGTCGCCGGCGTCCATCACCCTCACCTCCGCCACCTNGGCGTTGGCGACCATCCACCGCTGGTGCTCCTGGACGATGGCCATGTCATTCTCGACCACCACATACACCTTTCTCACGGCGCCGNACCTGTCCTCCCTGAACGCCGCCCGcc                                                                                                                                                                                                                            ]




>consensus_5436#0
TTTTTTTTTTTTTATTGGAAATATTGAAAATGGATTTATTTTTTTTAAAAAAACTATTGT
ACATATTAAAAATATTGTAAATATTTACAATATGTGTTTGTAATGTCATATTTTCAAATA
GACAAATTTATAATGGCTGGATCCAATTAACCCTACTTAGTACTAATCCTATACCCAAAT
CAAGTTTCACCATAATGTCATCCAAAAGAAAACAAATTAACTAATTCTCCATCAATCGCA
TTAATTTTAGATGTATGTGTTGGCGACGTCGGCAAGGTGCCCAGCCAGCTCCTCCGGCGC
GGAGAGCATGGCCATGTGGTCGCCGGCGTCCATCACCCTCACCTCCGCCACCTCGGTGTT
GGCGACCATCCACCGTTGGTGCTCCTGGACGATGGCCATGTCATTCTCGACCACCACATA
CACCTTTCTCACGGCGCCGTACCTGTCCTCCCTGAACGCCGACCGACGTCCCAACTCATC
CACGTACAAGGAGCTTGCTCGAACCAAGCTCTTCACAAGCGTGTACTCCTGTGTTCCGGT
GAGCTTAACTGCCATACCTTCCTTTCCGGAACTCCGTCCCGAACAGGAATGGAAGCGGGA
CTCCATTTGCATCTACCACGCTGCTCCACCCTGACCGAATCTTACCAAAGCGTATCGTAC
CCTAAAACCTATAGAGAAGGCCCACAG

consensusID : consensus_5436#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 355
fasta sequence

                              [TCCTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTGAAGAAAATCTTGCTCACTTACATGTGAGTCACCAGTCCAATATGCAAGTTTGGGTAATACTAAAACATAGTGTAAATGAAAAGAAATGATATTACCTAGTGCAATATGTAACTTAGTTAATAAAAAGGGGTCCAAAGTACAGTTTACTCTCAATTAAATATTAGCTATTGTAAATATTGAAAATGGATTTATTTTTTTTAAAAAAACTATTGTACATATTAAAAATATTGTAAATATTTACAATATGTGTTTGTAATGTCATATTTTCAAATAAACAAATTTATAATGGCTGGATCCAATTAACCCTACTTAGTACTAATA]

[+] EMBL CB659653             [TCCTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTGAAGAAAATCTTGCTCACTTACATGTGAGTCACCAGTCCAATATGCAAGTTTGGGTAATACTAAAACATAGTGTAAATGAAAAGAAATGATATTACCTAGTGCAATATGTAACTTAGTTAATAAAAAGGGGTCCAAAGTACAGTTTACTCTCAATTAAATATTAGCTATTGTAAATATTGAAAATGGATTTATTTTTTTTAAAAAAACTATTGTACATATTAAAAATATTGTAAATATTTACAATATGTGTTTGTAATGTCATATTTTCAAATAAACAAATTTATAATGGCTGGATCCAATTAACCCTACTTAGTACTAATA]




>consensus_5436#1
TCCTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTGAAGAAAATCTTGCTCACTTACATGTG
AGTCACCAGTCCAATATGCAAGTTTGGGTAATACTAAAACATAGTGTAAATGAAAAGAAA
TGATATTACCTAGTGCAATATGTAACTTAGTTAATAAAAAGGGGTCCAAAGTACAGTTTA
CTCTCAATTAAATATTAGCTATTGTAAATATTGAAAATGGATTTATTTTTTTTAAAAAAA
CTATTGTACATATTAAAAATATTGTAAATATTTACAATATGTGTTTGTAATGTCATATTT
TCAAATAAACAAATTTATAATGGCTGGATCCAATTAACCCTACTTAGTACTAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5436#0      TTTTTTTTTTTTTATTGGAAATATTGAAAATGGATTTATTTTTTTTAAAAAAACTATTGT 60
consensus_5436#1      ----TCCTTTTTTTTTGTTTTTTTT---------TTTTTTTTTTTTGAAGAAAATCTTGC 47
                          *  ****** ***    * **         *** ******** ** *** * *** 

consensus_5436#0      ACATATTAAAAATATTGTAAATATTTACAATATGTGTTTG--TAATGT-----CATATTT 113
consensus_5436#1      TCAC-TTACATGTGAGTCACCAGTCCAATATGCAAGTTTGGGTAATACTAAAACATAGTG 106
                       **  *** *  *     *    *  *  **    *****  ****       **** * 

consensus_5436#0      TCAAATAGACAAATTTATAATGGCTGGATCCA-ATTAACCCTACTTAGTACTAAT---CC 169
consensus_5436#1      TAAATGAAAAGAAATGATATTACCTAGTGCAATATGTAACTTAGTTAATAAAAAGGGGTC 166
                      * **  * *  ** * *** *  ** *  * * **  * * ** *** **  **     *

consensus_5436#0      TATACCCAAATCAAGTTTCACCATAATGTCATCCA----AAAGAAAACAAATTAACTAAT 225
consensus_5436#1      CAAAGTACAGTTTACTCTCAATTAAATATTAGCTATTGTAAATATTGAAAATGGATTTAT 226
                       * *    * *  * * ***    *** * * * *    *** *    ****  * * **

consensus_5436#0      TCTCCATCAATCGCATTAATTTTAGATGT---ATGTGTTGGCGACGTCGGCAAGGTGCCC 282
consensus_5436#1      TTTTTTTAAA--AAAACTATTGTACATATTAAAAATATTGTAAATATTTACAATATGTGT 284
                      * *   * **    *   *** ** ** *   *  * ***   *  *   ***  **   

consensus_5436#0      AGCCAGCTCCTCCGGCGCGGAGAGCATGGCCATGTGGTCGCCGGCGTCCATCACCCTCAC 342
consensus_5436#1      TTGTAATGTCATATTTTCAAATAA-ACAAATTTATAATGGCTGGATCCAATTAACCCTAC 343
                          *    *       *  * *  *      * *  * ** **   * ** * **  **

consensus_5436#0      CTC-CGCCACCTCGGTGTTGGCGACCATCCACCGTTGGTGCTCCTGGACGATGGCCATGT 401
consensus_5436#1      TTAGTACTAATA------------------------------------------------ 355
                       *    * *                                                   

consensus_5436#0      CATTCTCGACCACCACATACACCTTTCTCACGGCGCCGTACCTGTCCTCCCTGAACGCCG 461
consensus_5436#1      ------------------------------------------------------------
                                                                                  

consensus_5436#0      ACCGACGTCCCAACTCATCCACGTACAAGGAGCTTGCTCGAACCAAGCTCTTCACAAGCG 521
consensus_5436#1      ------------------------------------------------------------
                                                                                  

consensus_5436#0      TGTACTCCTGTGTTCCGGTGAGCTTAACTGCCATACCTTCCTTTCCGGAACTCCGTCCCG 581
consensus_5436#1      ------------------------------------------------------------
                                                                                  

consensus_5436#0      AACAGGAATGGAAGCGGGACTCCATTTGCATCTACCACGCTGCTCCACCCTGACCGAATC 641
consensus_5436#1      ------------------------------------------------------------
                                                                                  

consensus_5436#0      TTACCAAAGCGTATCGTACCCTAAAACCTATAGAGAAGGCCCACAG 687
consensus_5436#1      ----------------------------------------------