cluster # 5439

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Oryza sativa
cluster # 5439 cluster # 5439 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5439#0 length = 1502 sequences # 2

consensus_5439#1 length = 589 sequences # 1

consensusID : consensus_5439#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1502
fasta sequence

                              [CACGGCGTCGCGGTTTTCCCAAGCTGAGAGTTGTCGTGCGAGAGTGAGGAGCATGGCGATGCTGGGGAGCTCGTCGGCGGTGGTGCTGGAGCTGATGACGATGGGGTACCAGTCGGCGGCGTACCTCGGCGAGCTGCTCCGGGCGGCGTCCCCGGCGCAGGCAGGGGATGAGCAGCAGGAGCTCGCCGCGGAGATCCTCCGCTGCTGCGACCGCGTCATCGCCGAGCTGAACCGGGGAGGAGCCACTGGTGCTACTACCGGCAAGAAGCGGAAGGCGGCGGAGTCCGCCGCCGCCGCCGCCGTGACCTCCCCTTCTCTCCCCGTCACGCCGACCAAAAGAAGGGCGCGTGGCGCGGAGGCGGTGAGGGAGGTGAGGAGCGGCACGACGACGGACGGGTTCATCTGGAGGAAGTACGGGCAGAAGGAGATCAATGGCTGCAAGCACCCGAGGCTCTACTACCGCTGCGCGTTCAGGGGCCAGGGCTGCCTCGCCACGCGGCGGGTGCAGCAGTCGCAGTCGCAGGACGACCCGGCCGCGGCGTTCGTGATCGCCTACTACGGCGAGCACACCTGCGGAGGCGACGCCGCCGCCGCCGCCGCGTGCCGGGACGGGGAACTAATGCCACCTGCCGTCATCAACTCCGGCGCGTCGAGCTTCGCCGCCGCTTGGAACATGGCCTCGCGTGAGCCGGCGTCGTCGCTCGCCGTCGAGCGGAGGAGCTGCGACGGCGACGCTCCCAGCGAGACGTCGCAGGGGTGGTCTCCCTCCTTCTCGTCGGAGGTGGAGCTGGACGTGGTGGGATTCGACCTCGCCGGAGCCGACTCGTCGGCGTCGCCGGTGTGGGAGTTCTTGAATGGCAGCTTCGACTGGGAATTCGTCATCAACTCCCTCTGAATTTTCGATGCTTCGTGATCAGTAGCACACCAGCTGCCCCAAGAGTGCAGTAGTCTTTGCAAAACGCACAAAATTTCGCGGGAACTATCGAATTTCCCGCGTTTGCGCTTAAGTTAATAGCCTCAGTAGTTCGTCAGATAATCGCACGCACTATTTTAATTCAGGAAGGGATTTAGATTGACAAAGTATATTAGGTGAGAGTTAATATGGGAGAATTCGTAATGAAGAGTTGAATGTGTTGACGTTGACGTACAGGGGAAAAACACATGCTAAGAAGAAAAATGGCAGGTGAAAGGGGCAAGAAATGGCAAAGCTGAGCAACAGAGCAGGTAATAATAGAGAATTGCTACTCCTACTACTTGCAAGCATATATGTCCAGAAGAGCAGCCAAAGAGAACACAAGACCGTCAGCTTGACGCATAACTGACGCACTTCTGATGGTAACAAAAAACCGGCCACCATGTCCCATGTGAACGAATGGATTCATTAGTTGTAATAATGGTAATAGTAGTGACACTCAATTGCAATATCATGCTTGGTACAGGGTTAAGGATCAGATGGTTAGTTTAACCACCAATAGCAACAAGCTGAAACGAATACTGGTTTT]

[+] EMBL AK108657             [CACGGCGTCGCGGTTTTCCCAAGCTGAGAGTTGTCGTGCGAGAGTGAGGAGCATGGCGATGCTGGGGAGCTCGTCGGCGGTGGTGCTGGAGCTGATGACGATGGGGTACCAGTCGGCGGCGTACCTCGGCGAGCTGCTCCGGGCGGCGTCCCCGGCGCAGGCAGGGGATGAGCAGCAGGAGCTCGCCGCGGAGATCCTCCGCTGCTGCGACCGCGTCATCGCCGAGCTGAACCGGGGAGGAGCCACTGGTGCTACTACCGGCAAGAAGCGGAAGGCGGCGGAGTCCGCCGCCGCCGCCGCCGTGACCTCCCCTTCTCTCCCCGTCACGCCGACCAAAAGAAGGGCGCGTGGCGCGGAGGCGGTGAGGGAGGTGAGGAGCGGCACGACGACGGACGGGTTCATCTGGAGGAAGTACGGGCAGAAGGAGATCAATGGCTGCAAGCACCCGAGGCTCTACTACCGCTGCGCGTTCAGGGGCCAGGGCTGCCTCGCCACGCGGCGGGTGCAGCAGTCGCAGTCGCAGGACGACCCGGCCGCGGCGTTCGTGATCGCCTACTACGGCGAGCACACCTGCGGAGGCGACGCCGCCGCCGCCGCCGCGTGCCGGGACGGGGAACTAATGCCACCTGCCGTCATCAACTCCGGCGCGTCGAGCTTCGCCGCCGCTTGGAACATGGCCTCGCGTGAGCCGGCGTCGTCGCTCGCCGTCGAGCGGAGGAGCTGCGACGGCGACGCTCCCAGCGAGACGTCGCAGGGGTGGTCTCCCTCCTTCTCGTCGGAGGTGGAGCTGGACGTGGTGGGATTCGACCTCGCCGGAGCCGACTCGTCGGCGTCGCCGGTGTGGGAGTTCTTGAATGGCAGCTTCGACTGGGAATTCGTCATCAACTCCCTCTGAATTTTCGATGCTTCGTGATCAGTAGCACACCAGCTGCCCCAAGAGTGCAGTAGTCTTTGCAAAACGCACAAAATTTCGCGGGAACTATCGAATTTCCCGCGTTTGCGCTTAAGTTAATAGCCTCAGTAGTTCGTCAGATAATCGCACGCACTATTTTAATTCAGGAAGGGATTTAGATTGACAAAGTATATTAGGTGAGAGTTAATATGGGAGAATTCGTAATGAAGAGTTGAATGTGTTGACGTTGACGTACAGGGGAAAAACACATGCTAAGAAGAAAAATGGCAGGTGAAAGGGGCAAGAAATGGCAAAGCTGAGCAACAGAGCAGGTAATAATAGAGAATTGCTACTCCTACTACTTGCAAGCATATATGTCCAGAAGAGCAGCCAAAGAGAACACAAGACCGTCAGCTTGACGCATAACTGACGCACTTCTGATGGTAACAAAAAACCGGCCACCATGTCCCATGTGAACGAATGGATTCATTAGTTGTAATAATGGTAATAGTAGTGACACTCAATTGCAATATCATGCTTGGTACAGGGTTAAGGATCAGATGGTTAGTTTAACCACCAATAGCAACAAGCTGAAACGAATACTGGTTTT]
[-] EMBL AW070055             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  gccGAGGTACAGGGGAAAAACACATGCTAAGAAGAAAAATGGCAGGTGAAAGGGGCAAGAAATGGCAAAGCTGAGCAACAGAGCAGGTAATAATAGAGAATTGCTACTCCTACTACTTGCAAGCATATATGTCCAGAAGAGCAGCCAAAGAGAACACAAGACCGTCAGCTTGACGCATAACTGACGCACTTCTGATGGTAACAAAAAACCGGCCACCATGTCCCATGTGAACGAATGGATTCATTAGTTGTAATAATGGTAATAGTAGTGACACTCAATTGCAATATCA                                                                           ]




>consensus_5439#0
CACGGCGTCGCGGTTTTCCCAAGCTGAGAGTTGTCGTGCGAGAGTGAGGAGCATGGCGAT
GCTGGGGAGCTCGTCGGCGGTGGTGCTGGAGCTGATGACGATGGGGTACCAGTCGGCGGC
GTACCTCGGCGAGCTGCTCCGGGCGGCGTCCCCGGCGCAGGCAGGGGATGAGCAGCAGGA
GCTCGCCGCGGAGATCCTCCGCTGCTGCGACCGCGTCATCGCCGAGCTGAACCGGGGAGG
AGCCACTGGTGCTACTACCGGCAAGAAGCGGAAGGCGGCGGAGTCCGCCGCCGCCGCCGC
CGTGACCTCCCCTTCTCTCCCCGTCACGCCGACCAAAAGAAGGGCGCGTGGCGCGGAGGC
GGTGAGGGAGGTGAGGAGCGGCACGACGACGGACGGGTTCATCTGGAGGAAGTACGGGCA
GAAGGAGATCAATGGCTGCAAGCACCCGAGGCTCTACTACCGCTGCGCGTTCAGGGGCCA
GGGCTGCCTCGCCACGCGGCGGGTGCAGCAGTCGCAGTCGCAGGACGACCCGGCCGCGGC
GTTCGTGATCGCCTACTACGGCGAGCACACCTGCGGAGGCGACGCCGCCGCCGCCGCCGC
GTGCCGGGACGGGGAACTAATGCCACCTGCCGTCATCAACTCCGGCGCGTCGAGCTTCGC
CGCCGCTTGGAACATGGCCTCGCGTGAGCCGGCGTCGTCGCTCGCCGTCGAGCGGAGGAG
CTGCGACGGCGACGCTCCCAGCGAGACGTCGCAGGGGTGGTCTCCCTCCTTCTCGTCGGA
GGTGGAGCTGGACGTGGTGGGATTCGACCTCGCCGGAGCCGACTCGTCGGCGTCGCCGGT
GTGGGAGTTCTTGAATGGCAGCTTCGACTGGGAATTCGTCATCAACTCCCTCTGAATTTT
CGATGCTTCGTGATCAGTAGCACACCAGCTGCCCCAAGAGTGCAGTAGTCTTTGCAAAAC
GCACAAAATTTCGCGGGAACTATCGAATTTCCCGCGTTTGCGCTTAAGTTAATAGCCTCA
GTAGTTCGTCAGATAATCGCACGCACTATTTTAATTCAGGAAGGGATTTAGATTGACAAA
GTATATTAGGTGAGAGTTAATATGGGAGAATTCGTAATGAAGAGTTGAATGTGTTGACGT
TGACGTACAGGGGAAAAACACATGCTAAGAAGAAAAATGGCAGGTGAAAGGGGCAAGAAA
TGGCAAAGCTGAGCAACAGAGCAGGTAATAATAGAGAATTGCTACTCCTACTACTTGCAA
GCATATATGTCCAGAAGAGCAGCCAAAGAGAACACAAGACCGTCAGCTTGACGCATAACT
GACGCACTTCTGATGGTAACAAAAAACCGGCCACCATGTCCCATGTGAACGAATGGATTC
ATTAGTTGTAATAATGGTAATAGTAGTGACACTCAATTGCAATATCATGCTTGGTACAGG
GTTAAGGATCAGATGGTTAGTTTAACCACCAATAGCAACAAGCTGAAACGAATACTGGTT
TT

consensusID : consensus_5439#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 589
fasta sequence

                              [AGCCTTCGTGATCAGTAGCACCACCACCNNCCCCAAGAGTCAGTAGTCTGTGCAAAACGCACAAATTTCACGGGAACTATCGAATTTCCCGCGTTTTGCGCTTAAGTTAATACCCTCAGTAGTTCGTCAAGATAATCGCACGCANCTATTTTAATTCAGGAAGGGATTTAGATTGACCAAGTATATTAGGTGAGAGTTAATATGGGAGAATTCGTAATGAAGAGTTGAATGTGTTGACGTTGACGTACACGGGGAAAAACACATGCTAAGAAGAAAAATGGCAGGTGAAAGGGGCACAGAAATGGCCAAGCTGAGCAACAGAGCAGGTAATAATAGAGAATTGCTACTCCTACTACTTGCAAAGCATATATGTCCAGAAGACCACCCAAGAGAACACAGACCGTCAGCTTTGACGCATTAACTGACCCACCTTCTGATGGTAACAAAAAACCCGGCCCCCCATGGTCCCCATGGGGAACGAATGGGAATTCCATTATTTAATAATGTAATATAGTGACACCCATGCATATCAGCTGGTACAGGTTAAGACCAATGTTATTTACCCCNTACCACACTGAACGAAAAAAAA]

[+] EMBL BI806311             [AGCCTTCGTGATCAGTAGCACCACCACCNNCCCCAAGAGTCAGTAGTCTGTGCAAAACGCACAAATTTCACGGGAACTATCGAATTTCCCGCGTTTTGCGCTTAAGTTAATACCCTCAGTAGTTCGTCAAGATAATCGCACGCANCTATTTTAATTCAGGAAGGGATTTAGATTGACCAAGTATATTAGGTGAGAGTTAATATGGGAGAATTCGTAATGAAGAGTTGAATGTGTTGACGTTGACGTACACGGGGAAAAACACATGCTAAGAAGAAAAATGGCAGGTGAAAGGGGCACAGAAATGGCCAAGCTGAGCAACAGAGCAGGTAATAATAGAGAATTGCTACTCCTACTACTTGCAAAGCATATATGTCCAGAAGACCACCCAAGAGAACACAGACCGTCAGCTTTGACGCATTAACTGACCCACCTTCTGATGGTAACAAAAAACCCGGCCCCCCATGGTCCCCATGGGGAACGAATGGGAATTCCATTATTTAATAATGTAATATAGTGACACCCATGCATATCAGCTGGTACAGGTTAAGACCAATGTTATTTACCCCNTACCACACTGAACGAAAAAAAA]




>consensus_5439#1
AGCCTTCGTGATCAGTAGCACCACCACCNNCCCCAAGAGTCAGTAGTCTGTGCAAAACGC
ACAAATTTCACGGGAACTATCGAATTTCCCGCGTTTTGCGCTTAAGTTAATACCCTCAGT
AGTTCGTCAAGATAATCGCACGCANCTATTTTAATTCAGGAAGGGATTTAGATTGACCAA
GTATATTAGGTGAGAGTTAATATGGGAGAATTCGTAATGAAGAGTTGAATGTGTTGACGT
TGACGTACACGGGGAAAAACACATGCTAAGAAGAAAAATGGCAGGTGAAAGGGGCACAGA
AATGGCCAAGCTGAGCAACAGAGCAGGTAATAATAGAGAATTGCTACTCCTACTACTTGC
AAAGCATATATGTCCAGAAGACCACCCAAGAGAACACAGACCGTCAGCTTTGACGCATTA
ACTGACCCACCTTCTGATGGTAACAAAAAACCCGGCCCCCCATGGTCCCCATGGGGAACG
AATGGGAATTCCATTATTTAATAATGTAATATAGTGACACCCATGCATATCAGCTGGTAC
AGGTTAAGACCAATGTTATTTACCCCNTACCACACTGAACGAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5439#0      CACGGCGTCGCGGTTTTCCCAAGCTGAGAGTTGTCGTGCGAGAGTGAGGAGCATGGCGAT 60
consensus_5439#1      ------------------------------------------------------------
                                                                                  

consensus_5439#0      GCTGGGGAGCTCGTCGGCGGTGGTGCTGGAGCTGATGACGATGGGGTACCAGTCGGCGGC 120
consensus_5439#1      ------------------------------------------------------------
                                                                                  

consensus_5439#0      GTACCTCGGCGAGCTGCTCCGGGCGGCGTCCCCGGCGCAGGCAGGGGATGAGCAGCAGGA 180
consensus_5439#1      ------------------------------------------------------------
                                                                                  

consensus_5439#0      GCTCGCCGCGGAGATCCTCCGCTGCTGCGACCGCGTCATCGCCGAGCTGAACCGGGGAGG 240
consensus_5439#1      ------------------------------------------------------------
                                                                                  

consensus_5439#0      AGCCACTGGTGCTACTACCGGCAAGAAGCGGAAGGCGGCGGAGTCCGCCGCCGCCGCCGC 300
consensus_5439#1      ------------------------------------------------------------
                                                                                  

consensus_5439#0      CGTGACCTCCCCTTCTCTCCCCGTCACGCCGACCAAAAGAAGGGCGCGTGGCGCGGAGGC 360
consensus_5439#1      ------------------------------------------------------------
                                                                                  

consensus_5439#0      GGTGAGGGAGGTGAGGAGCGGCACGACGACGGACGGGTTCATCTGGAGGAAGTACGGGCA 420
consensus_5439#1      ------------------------------------------------------------
                                                                                  

consensus_5439#0      GAAGGAGATCAATGGCTGCAAGCACCCGAGGCTCTACTACCGCTGCGCGTTCAGGGGCCA 480
consensus_5439#1      ------------------------------------------------------------
                                                                                  

consensus_5439#0      GGGCTGCCTCGCCACGCGGCGGGTGCAGCAGTCGCAGTCGCAGGACGACCCGGCCGCGGC 540
consensus_5439#1      ------------------------------------------------------------
                                                                                  

consensus_5439#0      GTTCGTGATCGCCTACTACGGCGAGCACACCTGCGGAGGCGACGCCGCCGCCGCCGCCGC 600
consensus_5439#1      ------------------------------------------------------------
                                                                                  

consensus_5439#0      GTGCCGGGACGGGGAACTAATGCCACCTGCCGTCATCAACTCCGGCGCGTCGAGCTTCGC 660
consensus_5439#1      ------------------------------------------------------------
                                                                                  

consensus_5439#0      CGCCGCTTGGAACATGGCCTCGCGTGAGCCGGCGTCGTCGCTCGCCGTCGAGCGGAGGAG 720
consensus_5439#1      ------------------------------------------------------------
                                                                                  

consensus_5439#0      CTGCGACGGCGACGCTCCCAGCGAGACGTCGCAGGGGTGGTCTCCCTCCTTCTCGTCGGA 780
consensus_5439#1      ------------------------------------------------------------
                                                                                  

consensus_5439#0      GGTGGAGCTGGACGTGGTGGGATTCGACCTCGCCGGAGCCGACTCGTCGGCGTCGCCGGT 840
consensus_5439#1      ------------------------------------------------------------
                                                                                  

consensus_5439#0      GTGGGAGTTCTTGAATGGCAGCTTCGACTGGGAATTCGTCATCAACTCCCTCTGAATTTT 900
consensus_5439#1      ------------------------------------------------------------
                                                                                  

consensus_5439#0      CGATGCTTCGTGATCAGTAGCAC-ACCAGCTGCCCCAAGAGTGCAGTAGTCTTTGCAAAA 959
consensus_5439#1      --AGCCTTCGTGATCAGTAGCACCACCACCNNCCCCAAGAGT-CAGTAGTCTGTGCAAAA 57
                        *  ****************** **** *  ********** ********* *******

consensus_5439#0      CGCACAAAATTTCGCGGGAACTATCGAATTTCCCGCGTTT-GCGCTTAAGTTAATAGCCT 1018
consensus_5439#1      CGCACAAA-TTTCACGGGAACTATCGAATTTCCCGCGTTTTGCGCTTAAGTTAATACCCT 116
                      ******** **** ************************** *************** ***

consensus_5439#0      CAGTAGTTCGTCA-GATAATCGCACGCAC-TATTTTAATTCAGGAAGGGATTTAGATTGA 1076
consensus_5439#1      CAGTAGTTCGTCAAGATAATCGCACGCANCTATTTTAATTCAGGAAGGGATTTAGATTGA 176
                      ************* **************  ******************************

consensus_5439#0      CAAAGTATATTAGGTGAGAGTTAATATGGGAGAATTCGTAATGAAGAGTTGAATGTGTTG 1136
consensus_5439#1      CCAAGTATATTAGGTGAGAGTTAATATGGGAGAATTCGTAATGAAGAGTTGAATGTGTTG 236
                      * **********************************************************

consensus_5439#0      ACGTTGACGTACA-GGGGAAAAACACATGCTAAGAAGAAAAATGGCAGGTGAAAGGGGCA 1195
consensus_5439#1      ACGTTGACGTACACGGGGAAAAACACATGCTAAGAAGAAAAATGGCAGGTGAAAGGGGCA 296
                      ************* **********************************************

consensus_5439#0      -AGAAATGGCAAAGCTGAGCAACAGAGCAGGTAATAATAGAGAATTGCTACTCCTACTAC 1254
consensus_5439#1      CAGAAATGGCCAAGCTGAGCAACAGAGCAGGTAATAATAGAGAATTGCTACTCCTACTAC 356
                       ********* *************************************************

consensus_5439#0      TTGCAA-GCATATATGTCCAGAAGAGCAGCCAAAGAGAACACAAGACCGTCAGCTT-GAC 1312
consensus_5439#1      TTGCAAAGCATATATGTCCAGAAGACCACCCAA-GAGAACACA-GACCGTCAGCTTTGAC 414
                      ****** ****************** ** **** ********* ************ ***

consensus_5439#0      GCAT-AACTGACGCAC-TTCTGATGGTAACAAAAAACCGG--CCACCATG--TCCCATGT 1366
consensus_5439#1      GCATTAACTGACCCACCTTCTGATGGTAACAAAAAACCCGGCCCCCCATGGTCCCCATGG 474
                      **** ******* *** ********************* *  ** *****   ****** 

consensus_5439#0      G-AACGAATGG--ATTCATTAGTTGTAATAATGGTAATAGTAGTGACACTCAATTGCAAT 1423
consensus_5439#1      GGAACGAATGGGAATTCCATTATT-TAATAATG-TAATA-TAGTGACACCCA--TGCA-T 528
                      * *********  ****  *  ** ******** ***** ********* **  **** *

consensus_5439#0      ATCATGCTTGGTACAGGGTTAAGGATCAGATGGTTAGTTTAACCACCAATAGCAACAAGC 1483
consensus_5439#1      ATCAG--CTGGTACAGG--TTAAGACCAAT--GTTATTT--ACCCCNTACCACACTGAAC 580
                      ****    *********  * * ** **    **** **  *** *  *   **   * *

consensus_5439#0      TGAAACGAATACTGGTTTT 1502
consensus_5439#1      GAAAAAAAA---------- 589
                        ***  **