These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5441#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1717 fasta sequence [TTCCCAAACCCTAAAGCCCTCCTCCCCTTCCCGTGGCGATTCGCCGGTCCGTCCCCCAAGTCTAGGGTTTATGTTCGCTTTCTCCCCACGCATTCCTCCCACCCGCGGCGCTCCCTGATCTGGTCAAGCCCACCAGAATCCGCTCTCCAGAGTTGGTGGGGGCGGAGGGGGAAGGGAGGGGCGGCGGATGCAGACGGAGGCGAGAGTGGGGATGGCCGCCGCAACGATGGACAGCGGCGCCGCCGCCGCGGCCGCTCGGAGGTACTCGACGCAGCAGCAGCAGCAGCAGCCGCCGCCGCCGCAGCTGCACCACCACCAGCCGCAGCTCGGGACGGTGCCCCACCTCCTTGCCGGCGGCGTCGCGGGCGCCGTCAGCAAGACTTGTACCGCGCCTCTCGCCCGCCTCACTATTCTATTCCAGGTGCAAGGAATGCATTCAGATGTGGCTACCATGCGGAAGACTAGCATATGGCGTGAGGCATCCCGCATTGTCTACGAAGAAGGCTTCCGAGCATTCTGGAAAGGAAATCTTGTAACTATTGCACACCGGTTACCTTACTCCTCAATTAGCTTTTACACATATGAGAGGTACAAGAACCTGCTACAAATGATACCTGTTCTTGACAGGAATGGTGGATTTGGTGCAGATGTTGGTGTTAGATTGATAGGTGGTGGTTTGTCTGGAATAACAGCAGCTTCGATGACATATCCCTTGGACTTAGTACGGACTCGTCTTGCTGCTCAGACGAACACTGCTTACTACAGGGGCATATCTCATGCTCTTTACGCCATCTGCAGAGACGAGGGTGTCAAGGGGCTCTACAAGGGCCTTGGTGCCACTTTGCTGGGAGTAGGTCCCAGCATAGCAATAAGCTTCTGTGTCTATGAGACATTGCGATCTCATTGGCAAATAGAGAGGCCATATGATTCCCCTGTTCTGATCAGTTTGGCTTGTGGAAGTCTTTCAGGAATTGCATCCTCAACTATTACATTTCCGTTGGATCTAGTAAGACGCCGCATGCAGTTGGAAGGCGCAGCTGGAAGGGCCCGTGTCTACCAAACTGGACTTTTTGGAACATTTGGGCATATCGTTCGCACAGAAAGTTTAAGAGGATTGTATAGAGGAATTTTGCCCGAGTACTGCAAAGTGGTCCCAAGTGTTGGCATTGTTTTTATGACGTATGAGACGCTGAAGTCCATCCTCACGGAACTGGCATCAGATGATTA-GCTGTCCAACATTTGTCACGCTTGACAATTTTGATGTTTGGGCCAGAATAACACTTGAGGCTGATTAGAGCGAGAAAAATGACTTTGTAGCATATGTTAGGATCTAGATGGTACTAGGTTTTTAAGTTTATAATATCAT-GGAATGGAAGGATATTCATATGGTTACAGATTTTCTTGTAGTGCATGGTAAAAGAAGAGCCGCTGCCATAGGTCTTCAAATTTCTGTCCACCAGTTTTAGTGTATGTTAACAGTTTCAGTTTTGTAATGGTACATGAGGCCATTGTCTTCAG-CTCTACAATACTATTGAAAGATGGCCTCCAAGATGATCTGTTTATCCATGTTGTCCTAGTGAGCTTATTACAATTCATAAGTGAGTTCGGCTACATTATTGNGAATGGCCTTGTCATTCAAATTTCCTGGTAGTGAGCAAGGAACGTTGTNTCCCTCTTTATTGGACGATAGTTTCGNTAATGCGGCCTCTTCTTGGAT] [+] EMBL AK071979 [TTCCCAAACCCTAAAGCCCTCCTCCCCTTCCCGTGGCGATTCGCCGGTCCGTCCCCCAAGTCTAGGGTTTATGTTCGCTTTCTCCCCACGCATTCCTCCCACCCGCGGCGCTCCCTGATCTGGTCAAGCCCACCAGAATCCGCTCTCCAGAGTTGGTGGGGGCGGAGGGGGAAGGGAGGGGCGGCGGATGCAGACGGAGGCGAGAGTGGGGATGGCCGCCGCAACGATGGACAGCGGCGCCGCCGCCGCGGCCGCTCGGAGGTACTCGACGCAGCAGCAGCAGCAGCAGCCGCCGCCGCCGCAGCTGCACCACCACCAGCCGCAGCTCGGGACGGTGCCCCACCTCCTTGCCGGCGGCGTCGCGGGCGCCGTCAGCAAGACTTGTACCGCGCCTCTCGCCCGCCTCACTATTCTATTCCAGGTGCAAGGAATGCATTCAGATGTGGCTACCATGCGGAAGACTAGCATATGGCGTGAGGCATCCCGCATTGTCTACGAAGAAGGCTTCCGAGCATTCTGGAAAGGAAATCTTGTAACTATTGCACACCGGTTACCTTACTCCTCAATTAGCTTTTACACATATGAGAGGTACAAGAACCTGCTACAAATGATACCTGTTCTTGACAGGAATGGTGGATTTGGTGCAGATGTTGGTGTTAGATTGATAGGTGGTGGTTTGTCTGGAATAACAGCAGCTTCGATGACATATCCCTTGGACTTAGTACGGACTCGTCTTGCTGCTCAGACGAACACTGCTTACTACAGGGGCATATCTCATGCTCTTTACGCCATCTGCAGAGACGAGGGTGTCAAGGGGCTCTACAAGGGCCTTGGTGCCACTTTGCTGGGAGTAGGTCCCAGCATAGCAATAAGCTTCTGTGTCTATGAGACATTGCGATCTCATTGGCAAATAGAGAGGCCATATGATTCCCCTGTTCTGATCAGTTTGGCTTGTGGAAGTCTTTCAGGAATTGCATCCTCAACTATTACATTTCCGTTGGATCTAGTAAGACGCCGCATGCAGTTGGAAGGCGCAGCTGGAAGGGCCCGTGTCTACCAAACTGGACTTTTTGGAACATTTGGGCATATCGTTCGCACAGAAAGTTTAAGAGGATTGTATAGAGGAATTTTGCCCGAGTACTGCAAAGTGGTCCCAAGTGTTGGCATTGTTTTTATGACGTATGAGACGCTGAAGTCCATCCTCACGGAACTGGCATCAGATGATTA GCTGTCCAACATTTGTCACGCTTGACAATTTTGATGTTTGGGCCAGAATAACACTTGAGGCTGATTAGAGCGAGAAAAATGACTTTGTAGCATATGTTAGGATCTAGATGGTACTAGGTTTTTAAGTTTATAATATCAT GGAATGGAAGGATATTCATATGGTTACAGATTTTCTTGTAGTGCATGGTAAAAGAAGAGCCGCTGCCATAGGTCTTCAAATTTCTGTCCACCAGTTTTAGTGTATGTTAACAGTTTCAGTTTTGTAATGGTACATGAGGCCATTGTCTTCAG CTCTACAATACTATTGAAAGATGGCCTCCAAGATGATCTGTTTATCCATGTTGTCCTAG ] [+] EMBL AK105349 [ CCTCCCCTTCCCGTGGCGATTCGCCGGTCCGTCCCCCAAGTCTAGGGTTTATGTTCGCTTTCTCCCCACGCATTCCTCCCACCCGCGGCGCTCCCTGATCTGGTCAAGCCCACCAGAATCCGCTCTCCAGAGTTGGTGGGGGCGGAGGGGGAAGGGAGGGGCGGCGGATGCAGACGGAGGCGAGAGTGGGGATGGCCGCCGCAACGATGGACAGCGGCGCCGCCGCCGCGGCCGCTCGGAGGTACTCGACGCAGCAGCAGCAGCAGCAGCCGCCGCCGCCGCAGCTGCACCACCACCAGCCGCAGCTCGGGACGGTGCCCCACCTCCTTGCCGGCGGCGTCGCGGGCGCCGTCAGCAAGACTTGTACCGCGCCTCTCGCCCGCCTCACTATTCTATTCCAGGTGCAAGGAATGCATTCAGATGTGGCTACCATGCGGAAGACTAGCATATGGCGTGAGGCATCCCGCATTGTCTACGAAGAAGGCTTCCGAGCATTCTGGAAAGGAAATCTTGTAACTATTGCACACCGGTTACCTTACTCCTCAATTAGCTTTTACACATATGAGAGGTACAAGAACCTGCTACAAATGATACCTGGTCTTGACAGGAATGGTGGATTTGGTGCAGATGTTGGTGTTAGATTGATAGGTGGTGGTTTGTCTGGAATAACAGCAGCTTCGATGACATATCCCTTGGACTTAGTACGGACTCGTCTTGCTGCTCAGACGAACACTGCTTACTACAGGGGCATATCTCATGCTCTTTACGCCATCTGCAGAGACGAGGGTGTCAAGGGGCTCTACAAGGGCCTTGGTGCCACTTTGCTGGGAGTAGGTCCCAGCATAGCAATAAGCTTCTGTGTCTATGAGACATTGCGATCTCATTGGCAAATAGAGAGGCCATATGATTCCCCTGTTCTGATCAGTTTGGCTTGTGGAAGTCTTTCAGGAATTGCATCCTCAACTATTACATTTCCGTTGGATCTAGTAAGACGCCGCATGCAGTTGGAAGGCGCAGCTGGAAGGGCCCGTGTCTACCAAACTGGACTTTTTGGAACATTTGGGCATATCGTTCGCACAGAAAGTTTAAGAGGATTGTATAGAGGAATTTTGCCCGAGTACTGCAAAGTGGTCCCAAGTGTTGGCATTGTTTTTATGACGTATGAGACGCTGAAGTCCATCCTCACGGAACTGGCATCAGATGATTA GCTGTCCAACATTTGTCACGCTTGACAATTTTGATGTTTGGGCCAGAATAACACTTGAGGCTGATTAGAGCGAGAAAAATGACTTTGTAGCATATGTTAGGATCTAGATGGTACTAGGTTTTTAAGTTTATAATATCAT GGAATGGAAGGATATTCATATGGTTACAGATTTTCTTGTAGTGCATGGTAAAAGAAGAGCCGCTGCCATAGGTCTTCAAATTTCTGTCCACCAGTTTTAGTGTATGTTAACAGTTTCAGTTTTGTAATGATACATGAGGCCATTGTCTTCAG CTCTACAATACTATTGAAA ] [+] EMBL CB096567 [ GAGGAATTTTGCCCGAGTACTGCAAAGTGGTCCCAAGTGTTGGCATTGTTTTTATGACGTATGAGACGCTGAAGTCCATCCTCACGGAACTGGCATCAGATGATTANGCTGTCCAACATTTGTCACGCTTGACAATTTTGATGTTTGGGCCAGAATAACACTTGAGGCTGATTAGAGCGAGAAAAATGACTTTGTAGCATATGTTAGGATTTAGATGGTACTAGGTTTTTAAGTTTATAATATCATCGGAATGGAAGGATATTCATATGGTTACAGATTTTCTTGTAGTGCATGGTAAAAGAAGAGCCACTGCCATAGGTCCTCAAATCTCTGTCCACCAGTTTTAGTGTATGCTAACAGTTTCAGTTTTGTAATGGTACATGAGGCCATTGTCTTCAGCCTCTACAATACTATTGAAAGATGGCCTCCAAGATGATCTGNTTATCAATGTTGTCCTAGTGAGCTTATTACAATTCATAAGTGAGTTCGGCTACATTATTGNGAATGGCCTTGTCATTCAAATTTCCTGGTAGTGAGCAAGGAACGTTGTNTCCCTCTTTATTGGACGATAGTTTCGNTAATGCGGCCTCTTCTTGGAT] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||