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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5444#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1191 fasta sequence
[CCCCACGCCCGCCGCGCGCGCGAGAGAGATCGAGATCGACCGCCACCGTGAGCGCCTCGCGCTTCCCCGCCCGCGGCCACGGCACCGCCGGCCTCAGCCGGCGCCGCCTCCGCAGCAGCCAAGAGGAGAGGCACAGCCAGCTCCGCCTCCTCCGCCTCTTCGACGCCTTCATCCTCCTCGCCGCCGCCGCCGCCGCATCCGCGACAGGGGTCCCGTAGCGCGGCCGCCGTCGCGATGGCCGCGTCCGTTCTCGCGCTCGCCGTCGCGTTCCTCCTCGGCGCCAGCGGCTACGGGGTCGACAGGGGCGCCGCGGCCGCCTCCCCGGCGGCGGAGGGCGTCGAGGTGGCTTATGGGAGCACCATCAAGCTGATGCACGAGAAGACGAAGCACCGGCTGCACTCGCACGATGTGCCGTATGGCTCAGGCAGCGGCCAGCAGTCCGTCACTGGCTTCCCCGAAGTCGATGATTCCAATAGCTACTGGATCGTGCGGCCCTCTCCAGATTCATCAGCTAAACAGGGTGATGCCATTGAAACCGGTAGCATCATCAGGTTGCAACACATGAGGACACGGAAATGGTTACATAGCCACTTGCATGCTTCACCATTATCCGGTAACCTAGAGGTTAGCTGTTTTGGTGGGGATGGACAATCAGATACTGGAGATTATTGGAGGCTGGAGATTGAGGGAGGTGGAAAGCTATGGAAACAGGATCAGAAAGTAAGACTCCGACATGTTGATACTGGAGGTTATCTGCACAGTCACAACAAGAAGTACAACAGGCTTGGTGGTGGGCAGCAAGAGGTATGTGGCGTTAGAGAGAAGCGAGCTGAAAATATTTGGTTGGCAACAGAGGGCGTCTACCTTCCCGTTAACAAAAGCAAGTAAACTCAACATTCCCATGGGTGCGTCCAAGGTTAACATAGCACCAGAATTTTACTGACATTTTGTTCTGCTAATGCTTTTAAATTTAAAGAAGGGACCTAAACCCTGAGTCCCGAGTATTTTGTTGGTTATAGATGACGATGTGCAGAAAATGAGAAATATACAAACGTTTCATGTAGCCAATTTACTTTCTAATATTCAGAACGACAAGCTGTTGTATAATTTGTATTTGCTCTTCATGCTGACGCTAGCAAGCACACCTATCAACTATGTTTGTTTACTATTAAGCTAAGTGCAATTATGTTA]
[+] EMBL AK058761 [CCCCACGCCCGCCGCGCGCGCGAGAGAGATCGAGATCGACCGCCACCGTGAGCGCCTCGCGCTTCCCCGCCCGCGGCCACGGCACCGCCGGCCTCAGCCGGCGCCGCCTCCGCAGCAGCCAAGAGGAGAGGCACAGCCAGCTCCGCCTCCTCCGCCTCTTCGACGCCTTCATCCTCCTCGCCGCCGCCGCCGCCGCATCCGCGACAGGGGTCCCGTAGCGCGGCCGCCGTCGCGATGGCCGCGTCCGTTCTCGCGCTCGCCGTCGCGTTCCTCCTCGGCGCCAGCGGCTACGGGGTCGACAGGGGCGCCGCGGCCGCCTCCCCGGCGGCGGAGGGCGTCGAGGTGGCTTATGGGAGCACCATCAAGCTGATGCACGAGAAGACGAAGCACCGGCTGCACTCGCACGATGTGCCGTATGGCTCAGGCAGCGGCCAGCAGTCCGTCACTGGCTTCCCCGAAGTCGATGATTCCAATAGCTACTGGATCGTGCGGCCCTCTCCAGATTCATCAGCTAAACAGGGTGATGCCATTGAAACCGGTAGCATCATCAGGTTGCAACACATGAGGACACGGAAATGGTTACATAGCCACTTGCATGCTTCACCATTATCCGGTAACCTAGAGGTTAGCTGTTTTGGTGGGGATGGACAATCAGATACTGGAGATTATTGGAGGCTGGAGATTGAGGGAGGTGGAAAGCTATGGAAACAGGATCAGAAAGTAAGACTCCGACATGTTGATACTGGAGGTTATCTGCACAGTCACAACAAGAAGTACAACAGGCTTGGTGGTGGGCAGCAAGAGGTATGTGGCGTTAGAGAGAAGCGAGCTGAAAATATTTGGTTGGCAACAGAGGGCGTCTACCTTCCCGTTAACAAAAGCAAGTAAACTCAACATTCCCATGGGTGCGTCCAAGGTTAACATAGCACCAGAATTTTACTGACATTTTGTTCTGCTAATGCTTTTAAATTTAAAGAAGGGACCTAAACCCTGAGTCCCGAGTATTTTGTTGGTTATAGATGACGATGTGCAGAAAATGAGAAATATACAAACGTTTCATGTAGCCAATTTACTTTCTAATATTCAGAACGACAAGCTGTTGTATAATTTGTATTTGCTCTTCATGCTGACGCTAGCAAGCACACCTATCAACTATGTTTGTTTACTATTAAGCTAAGTGCAATTATGTTA]
[+] EMBL AA749683 [ GGAGGTTATCTGCACAGTCACAACAAGAAGTACAACAGGCTTGGTGGTGGGCAGCAAGAGGTATGTGGCATTAGAGAGAAGAG GCT RAAATATTTGGTTGGCAACAGAGGGCGTCTACCTTCCCGTTAACAAAAGCAAGTGAACTCAACATTCCCAT GGTTCGTCCAAGGTTAACATAGCACCAGAATTTTACTGACATTTTGTTCTGCTAATGCTTTTAAATT ]
consensusID : consensus_5444#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence
[GCCGAGGTTAACATAGCACCAGAATTTTACTGACATTTTGTTCTGCTAATGCTTTTAAATTTAAAGAAGGGACCTAAACCCTGAGTCCCGAGTATTTTGTTGGTTATAGATGACGATGTGCAGAAAATGAGAAATATACAAACGTTTCATGTAGCCAATTTACTTTTTAATATTCAGAACGACAAGCTGTTGTATAATTTGTATTTGCTCTTCATGCTGACGCTAGCAAGCACACCTATCAACTATGTCTGTTTACTATTAAAAAAAAAAAAAAAA]
[-] EMBL AW070062 [GCCGAGGTTAACATAGCACCAGAATTTTACTGACATTTTGTTCTGCTAATGCTTTTAAATTTAAAGAAGGGACCTAAACCCTGAGTCCCGAGTATTTTGTTGGTTATAGATGACGATGTGCAGAAAATGAGAAATATACAAACGTTTCATGTAGCCAATTTACTTTTTAATATTCAGAACGACAAGCTGTTGTATAATTTGTATTTGCTCTTCATGCTGACGCTAGCAAGCACACCTATCAACTATGTCTGTTTACTATTAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5444#0 CCCCACGCCCGCCGCGCGCGCGAGAGAGATCGAGATCGACCGCCACCGTGAGCGCCTCGC 60
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 GCTTCCCCGCCCGCGGCCACGGCACCGCCGGCCTCAGCCGGCGCCGCCTCCGCAGCAGCC 120
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 AAGAGGAGAGGCACAGCCAGCTCCGCCTCCTCCGCCTCTTCGACGCCTTCATCCTCCTCG 180
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 CCGCCGCCGCCGCCGCATCCGCGACAGGGGTCCCGTAGCGCGGCCGCCGTCGCGATGGCC 240
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 GCGTCCGTTCTCGCGCTCGCCGTCGCGTTCCTCCTCGGCGCCAGCGGCTACGGGGTCGAC 300
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 AGGGGCGCCGCGGCCGCCTCCCCGGCGGCGGAGGGCGTCGAGGTGGCTTATGGGAGCACC 360
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 ATCAAGCTGATGCACGAGAAGACGAAGCACCGGCTGCACTCGCACGATGTGCCGTATGGC 420
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 TCAGGCAGCGGCCAGCAGTCCGTCACTGGCTTCCCCGAAGTCGATGATTCCAATAGCTAC 480
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 TGGATCGTGCGGCCCTCTCCAGATTCATCAGCTAAACAGGGTGATGCCATTGAAACCGGT 540
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 AGCATCATCAGGTTGCAACACATGAGGACACGGAAATGGTTACATAGCCACTTGCATGCT 600
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 TCACCATTATCCGGTAACCTAGAGGTTAGCTGTTTTGGTGGGGATGGACAATCAGATACT 660
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 GGAGATTATTGGAGGCTGGAGATTGAGGGAGGTGGAAAGCTATGGAAACAGGATCAGAAA 720
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 GTAAGACTCCGACATGTTGATACTGGAGGTTATCTGCACAGTCACAACAAGAAGTACAAC 780
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 AGGCTTGGTGGTGGGCAGCAAGAGGTATGTGGCGTTAGAGAGAAGCGAGCTGAAAATATT 840
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 TGGTTGGCAACAGAGGGCGTCTACCTTCCCGTTAACAAAAGCAAGTAAACTCAACATTCC 900
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 CATGGGTGCGTCCAAGGTTAACATAGCACCAGAATTTTACTGACATTTTGTTCTGCTAAT 960
consensus_5444#1 ----------GCCGAGGTTAACATAGCACCAGAATTTTACTGACATTTTGTTCTGCTAAT 50
** **********************************************
consensus_5444#0 GCTTTTAAATTTAAAGAAGGGACCTAAACCCTGAGTCCCGAGTATTTTGTTGGTTATAGA 1020
consensus_5444#1 GCTTTTAAATTTAAAGAAGGGACCTAAACCCTGAGTCCCGAGTATTTTGTTGGTTATAGA 110
************************************************************
consensus_5444#0 TGACGATGTGCAGAAAATGAGAAATATACAAACGTTTCATGTAGCCAATTTACTTTCTAA 1080
consensus_5444#1 TGACGATGTGCAGAAAATGAGAAATATACAAACGTTTCATGTAGCCAATTTACTTTTTAA 170
******************************************************** ***
consensus_5444#0 TATTCAGAACGACAAGCTGTTGTATAATTTGTATTTGCTCTTCATGCTGACGCTAGCAAG 1140
consensus_5444#1 TATTCAGAACGACAAGCTGTTGTATAATTTGTATTTGCTCTTCATGCTGACGCTAGCAAG 230
************************************************************
consensus_5444#0 CACACCTATCAACTATGTTTGTTTACTATTAAGCTAAGTGCAATTATGTTA 1191
consensus_5444#1 CACACCTATCAACTATGTCTGTTTACTATTAAAAAAAAAAAAAAAA----- 276
****************** ************* ** ** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||