cluster # 5454

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Oryza sativa
cluster # 5454 cluster # 5454 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5454#0 length = 341 sequences # 1

consensus_5454#1 length = 232 sequences # 1
consensus_5454#2 length = 231 sequences # 1

consensusID : consensus_5454#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence

                              [CGCGTGCCGGTGGAAGACATGCGACCCGACCGACGAGGAGTATCTGCCAGGAGCAAAGCCGAGTATGAAGACTTATAGATGGTTGTCGTGGCCTGAGCACCCAAGCCTCAGCATGTGGAAATGAAGTTGAGTGTGCCTAGGTGTCTGTTGCCTAGTGGCGTAGTTTGCTTTGTGCGCTTGAGTGTTGCTCTGGCGCTGGTGTCGCTTTTGGCGCCGTCGCTTTTATGGTTTTCTGTAATGTTGTGTTGCTCATCTATGGGCCTGTCCATGATGGCACTTATGTAAAGACTACTACCCAGTGATGTAATAAACAGTTTACTTNGATTCCACANNTTAAAAAA]

[+] EMBL BM038603             [CGCGTGCCGGTGGAAGACATGCGACCCGACCGACGAGGAGTATCTGCCAGGAGCAAAGCCGAGTATGAAGACTTATAGATGGTTGTCGTGGCCTGAGCACCCAAGCCTCAGCATGTGGAAATGAAGTTGAGTGTGCCTAGGTGTCTGTTGCCTAGTGGCGTAGTTTGCTTTGTGCGCTTGAGTGTTGCTCTGGCGCTGGTGTCGCTTTTGGCGCCGTCGCTTTTATGGTTTTCTGTAATGTTGTGTTGCTCATCTATGGGCCTGTCCATGATGGCACTTATGTAAAGACTACTACCCAGTGATGTAATAAACAGTTTACTTNGATTCCACANNTTAAAAAA]




>consensus_5454#0
CGCGTGCCGGTGGAAGACATGCGACCCGACCGACGAGGAGTATCTGCCAGGAGCAAAGCC
GAGTATGAAGACTTATAGATGGTTGTCGTGGCCTGAGCACCCAAGCCTCAGCATGTGGAA
ATGAAGTTGAGTGTGCCTAGGTGTCTGTTGCCTAGTGGCGTAGTTTGCTTTGTGCGCTTG
AGTGTTGCTCTGGCGCTGGTGTCGCTTTTGGCGCCGTCGCTTTTATGGTTTTCTGTAATG
TTGTGTTGCTCATCTATGGGCCTGTCCATGATGGCACTTATGTAAAGACTACTACCCAGT
GATGTAATAAACAGTTTACTTNGATTCCACANNTTAAAAAA

consensusID : consensus_5454#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 232
fasta sequence

                              [CTGAGGCACACACAAAGCACTGCGCCATGGTGGAAATGAAAGTATTTTGCACTGAGTGTGCTTGTGGCACTGAGGTGGCAGTGAGTTGGCTGTGTGGTGCAGCTGTGAGGTGTGTGCTGCTGGCAGCTGTTCGCTTTTGCGCACGTCGCTTTTATGGTTTTCTGTAATGTTGTGTTGCTCATCTATGGGCCATGTCCATGATGGCAACTTATGTAAAGACTACTACCCAGTG]

[+] EMBL BI809528             [CTGAGGCACACACAAAGCACTGCGCCATGGTGGAAATGAAAGTATTTTGCACTGAGTGTGCTTGTGGCACTGAGGTGGCAGTGAGTTGGCTGTGTGGTGCAGCTGTGAGGTGTGTGCTGCTGGCAGCTGTTCGCTTTTGCGCACGTCGCTTTTATGGTTTTCTGTAATGTTGTGTTGCTCATCTATGGGCCATGTCCATGATGGCAACTTATGTAAAGACTACTACCCAGTG]




>consensus_5454#1
CTGAGGCACACACAAAGCACTGCGCCATGGTGGAAATGAAAGTATTTTGCACTGAGTGTG
CTTGTGGCACTGAGGTGGCAGTGAGTTGGCTGTGTGGTGCAGCTGTGAGGTGTGTGCTGC
TGGCAGCTGTTCGCTTTTGCGCACGTCGCTTTTATGGTTTTCTGTAATGTTGTGTTGCTC
ATCTATGGGCCATGTCCATGATGGCAACTTATGTAAAGACTACTACCCAGTG

consensusID : consensus_5454#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 231
fasta sequence

                              [CCCCAAGCCTCGCATGTGAAATAAGTTAGGTTGCACTAGGTTCTTTGCCTAGTGCGTAGTTGCATTTGTCGCTTTAGTTTCTCTGCAGCTGTTCGCATTTTGCAGCACGTCGCTTTTATGGTTTTCTGTAATTTGTGTTGCTCATCTATGGGCACTGTCCATGATGGCAACTTATGTAAAGACTACTACCCAGTGATGTAATAAAGCAGTTTACTTTGATTCAAAAAAAAA]

[+] EMBL BI813624             [CCCCAAGCCTCGCATGTGAAATAAGTTAGGTTGCACTAGGTTCTTTGCCTAGTGCGTAGTTGCATTTGTCGCTTTAGTTTCTCTGCAGCTGTTCGCATTTTGCAGCACGTCGCTTTTATGGTTTTCTGTAATTTGTGTTGCTCATCTATGGGCACTGTCCATGATGGCAACTTATGTAAAGACTACTACCCAGTGATGTAATAAAGCAGTTTACTTTGATTCAAAAAAAAA]




>consensus_5454#2
CCCCAAGCCTCGCATGTGAAATAAGTTAGGTTGCACTAGGTTCTTTGCCTAGTGCGTAGT
TGCATTTGTCGCTTTAGTTTCTCTGCAGCTGTTCGCATTTTGCAGCACGTCGCTTTTATG
GTTTTCTGTAATTTGTGTTGCTCATCTATGGGCACTGTCCATGATGGCAACTTATGTAAA
GACTACTACCCAGTGATGTAATAAAGCAGTTTACTTTGATTCAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5454#0      CGCGTGCCGGTGGAAGACATGCGACCCGACCGACGAGGAGTATCTGCCAGGAGCAAAGCC 60
consensus_5454#2      ------------------------------------------------------------
consensus_5454#1      ------------------------------------------------------------
                                                                                  

consensus_5454#0      GAGTATGAAGACTTATAGATGGTTGTCGTGGCCTGAGCACCCAAGCCTCAGCAT----GT 116
consensus_5454#2      --------------------------------------CCCCAAGCCTC-GCAT----GT 17
consensus_5454#1      -----------------------------CTGAGGCACACACAAAGCACTGCGCCATGGT 31
                                                             * ***  * * **      **

consensus_5454#0      GGAAATGAAGTTGAGTGTGCCTAGGTGT--CTGTTGCCTAGTGGCGTAGTTTGCTT---T 171
consensus_5454#2      GAAAT--AAGTTAGGTTGCACTAGGT-T--CT-TTGCCTAGTG-CGTAGTTGCATT---T 67
consensus_5454#1      GGAAATGAAAGTATTTTGCACTGAGTGTGCTTGTGGCACTGAGGTGGCAGTGAGTTGGCT 91
                      * **   **  *   *    **  ** *   * * **   * *  *    *   **   *

consensus_5454#0      GTGCGCTTGAGTG----------TTGCTCTG-GCGCTGGTGTCGCTTTTGGCGCCGTCGC 220
consensus_5454#2      GT-CGCTTTAGTT----------T--CTCTG-CAGCTGTTCGCATTTTGCAGCACGTCGC 113
consensus_5454#1      GTGTGGTGCAGCTGTGAGGTGTGTGCTGCTGGCAGCTGTTCGC-TTTTGC-GCACGTCGC 149
                      **  * *  **            *    ***   **** *  *  ***      ******

consensus_5454#0      TTTTATGGTTTTCTGTAATGTTGTGTTGCTCATCTATGGGC-CTGTCCATGATGGCA-CT 278
consensus_5454#2      TTTTATGGTTTTCTGTAAT-TTGTGTTGCTCATCTATGGGCACTGTCCATGATGGCAACT 172
consensus_5454#1      TTTTATGGTTTTCTGTAATGTTGTGTTGCTCATCTATGGGCCATGTCCATGATGGCAACT 209
                      ******************* *********************  ************** **

consensus_5454#0      TATGTAAAGACTACTACCCAGTGATGTAATAAA-CAGTTTACTTNGATTCCACANNTTAA 337
consensus_5454#2      TATGTAAAGACTACTACCCAGTGATGTAATAAAGCAGTTTACTTTGATTCAAAAAAAAA- 231
consensus_5454#1      TATGTAAAGACTACTACCCAGTG------------------------------------- 232
                      ***********************                                     

consensus_5454#0      AAAA 341
consensus_5454#2      ----
consensus_5454#1      ----