cluster # 5457

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Oryza sativa
cluster # 5457 cluster # 5457 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5457#0 length = 332 sequences # 2

consensus_5457#1 length = 224 sequences # 1

consensusID : consensus_5457#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 332
fasta sequence

                              [TGAGGAGGGAGAACCAGTGGGCCTTCGAATGAAAGCCCCCCCCCCCCCCCCAAAAAAAAAAGCAACAACCATCTCATGCGAATGACCAGCAAGGAAGGGGAAGCGCGTCATGTCGAGAAGTTGATCCTGGAGCAGCTATGAACTCTCTGCTTGAACTGTCTTTAAGAAAGTTGTAATTAGGGAAAGTTCGTCGTTAGTTGGTTGGGAGAGCAGACTATTTAGCTGACTCCGTTCTGTTTTGTGCACTCTGGAGCGAGAAGGAAATGATTGCTGGTTGTTCTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AA750861             [TGAGGAGGGAGAACCAGTGGGCCTTCGAATGAAAGCCCCCCCCCCCCCCCCAAAAAAAAAAGCAACAACCATCTCATGCGAATGACCAGCAAGGAAGGGGAAGCGCGTCATGTCGAGAAGTTGATCCTGGAGCAGCTATGAACTCTCTGCTTGAACTGTCTTTAAGAAAGTTGTAATTAGGGAAAGTTCGTCGTTAGTTGGTTGGGAGAGCAGACTATTTAGCT                                                                                                            ]
[+] EMBL BP184896             [                                           CCCCCCCCCAAAAAAAAAGCAACAACCATCTCATGCGAATGACCAGCAAGGAAGGGGAAGCGCGTCATGTCGAGAAGTTGATCCTGGAGCAGCTATGAACTCTCTGCTTGAACTGTCTTTAAGAAAGTTGTAATTAGGGTTAGTTCGTCGTTAGTTGGTTGGGAGAGCAGACTATTTAGCTGACTCCGTTCTGTTTTGTGCACTCTGGAGCGAGAAGGAAATGATTGCTGGTTGTTCTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_5457#0
TGAGGAGGGAGAACCAGTGGGCCTTCGAATGAAAGCCCCCCCCCCCCCCCCAAAAAAAAA
AGCAACAACCATCTCATGCGAATGACCAGCAAGGAAGGGGAAGCGCGTCATGTCGAGAAG
TTGATCCTGGAGCAGCTATGAACTCTCTGCTTGAACTGTCTTTAAGAAAGTTGTAATTAG
GGAAAGTTCGTCGTTAGTTGGTTGGGAGAGCAGACTATTTAGCTGACTCCGTTCTGTTTT
GTGCACTCTGGAGCGAGAAGGAAATGATTGCTGGTTGTTCTGCTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_5457#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence

                              [GAATGACTTCACCCCCGAGGAAGAAGAGGAGGTGAGGAGGGAGAACCAGTGGGCCTTCGAATGAAGNNNCCCCCCCCCCCCCCAAAAAAAAAANCAACCATCTCATGCGAATGACCAGCAAGGAAGGGGAAGTCNCGTCATGTCGAGAAGTTGATCCTGGAGCAGCCTATGACTCTCTGCTTGAACTGTCTTTAGAAGTGTATTAGGGTAGTTCGTCGTTAGTT]

[+] EMBL AA750080             [GAATGACTTCACCCCCGAGGAAGAAGAGGAGGTGAGGAGGGAGAACCAGTGGGCCTTCGAATGAAGNNNCCCCCCCCCCCCCCAAAAAAAAAANCAACCATCTCATGCGAATGACCAGCAAGGAAGGGGAAGTCNCGTCATGTCGAGAAGTTGATCCTGGAGCAGCCTATGACTCTCTGCTTGAACTGTCTTTAGAAGTGTATTAGGGTAGTTCGTCGTTAGTT]




>consensus_5457#1
GAATGACTTCACCCCCGAGGAAGAAGAGGAGGTGAGGAGGGAGAACCAGTGGGCCTTCGA
ATGAAGNNNCCCCCCCCCCCCCCAAAAAAAAAANCAACCATCTCATGCGAATGACCAGCA
AGGAAGGGGAAGTCNCGTCATGTCGAGAAGTTGATCCTGGAGCAGCCTATGACTCTCTGC
TTGAACTGTCTTTAGAAGTGTATTAGGGTAGTTCGTCGTTAGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5457#0      --------------------------------TGAGGAGGGAGAACCAGTGGGCCTTCGA 28
consensus_5457#1      GAATGACTTCACCCCCGAGGAAGAAGAGGAGGTGAGGAGGGAGAACCAGTGGGCCTTCGA 60
                                                      ****************************

consensus_5457#0      ATGAAAGCCCCCCCCCCCCCCCCAAAAAAAAAAGCAACAACCATCTCATGCGAATGACCA 88
consensus_5457#1      ATGAAGNNNCCCCCCCCCCCCCCAAAAAAAAAANCA---ACCATCTCATGCGAATGACCA 117
                      *****    ************************ **   *********************

consensus_5457#0      GCAAGGAAGGGGAAG-CGCGTCATGTCGAGAAGTTGATCCTGGAGCAGCTATGAACTCTC 147
consensus_5457#1      GCAAGGAAGGGGAAGTCNCGTCATGTCGAGAAGTTGATCCTGGAGCAGCCTATGACTCTC 177
                      *************** * *******************************     ******

consensus_5457#0      TGCTTGAACTGTCTTTAAGAAAGTTGTAATTAGGGAAAGTTCGTCGTTAGTTGGTTGGGA 207
consensus_5457#1      TGCTTGAACTGTCTTTAGAAGTGT----ATTAGGGTA-GTTCGTCGTTAGTT-------- 224
                      *****************  *  **    ******* * **************        

consensus_5457#0      GAGCAGACTATTTAGCTGACTCCGTTCTGTTTTGTGCACTCTGGAGCGAGAAGGAAATGA 267
consensus_5457#1      ------------------------------------------------------------
                                                                                  

consensus_5457#0      TTGCTGGTTGTTCTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 327
consensus_5457#1      ------------------------------------------------------------
                                                                                  

consensus_5457#0      AAAAA 332
consensus_5457#1      -----