cluster # 5459

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Oryza sativa
cluster # 5459 cluster # 5459 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5459#0 length = 288 sequences # 1

consensus_5459#1 length = 273 sequences # 1
consensus_5459#2 length = 212 sequences # 1

consensusID : consensus_5459#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence

                              [CTCTCTTCCCCCCCCCCCNTTNGCCCCNGGGTCCAGTTCCATNTAATAAGNTTTTNGTNGAGATGGGCCGAAAGTTNTTNGTTGGTGGAAANTGGAAATGNAANGGGACCANTGATNAGGTGGACAAAATTNTNAAAATTNTGAATGAGGGANANATTGNTTNTANAGATGTTGTTGAGGTGGTTNTAAGCCCACCTTATGTGTTCCTTCCCGTGGTNAAGAGTNANCTGNGNCCGGAGATCCAAGTTGCTGCTCAAAATTNTTGGGTNAAGAAGGGNGGGGGTTTNA]

[+] EMBL OSC107631            [CTCTCTTCCCCCCCCCCCNTTNGCCCCNGGGTCCAGTTCCATNTAATAAGNTTTTNGTNGAGATGGGCCGAAAGTTNTTNGTTGGTGGAAANTGGAAATGNAANGGGACCANTGATNAGGTGGACAAAATTNTNAAAATTNTGAATGAGGGANANATTGNTTNTANAGATGTTGTTGAGGTGGTTNTAAGCCCACCTTATGTGTTCCTTCCCGTGGTNAAGAGTNANCTGNGNCCGGAGATCCAAGTTGCTGCTCAAAATTNTTGGGTNAAGAAGGGNGGGGGTTTNA]




>consensus_5459#0
CTCTCTTCCCCCCCCCCCNTTNGCCCCNGGGTCCAGTTCCATNTAATAAGNTTTTNGTNG
AGATGGGCCGAAAGTTNTTNGTTGGTGGAAANTGGAAATGNAANGGGACCANTGATNAGG
TGGACAAAATTNTNAAAATTNTGAATGAGGGANANATTGNTTNTANAGATGTTGTTGAGG
TGGTTNTAAGCCCACCTTATGTGTTCCTTCCCGTGGTNAAGAGTNANCTGNGNCCGGAGA
TCCAAGTTGCTGCTCAAAATTNTTGGGTNAAGAAGGGNGGGGGTTTNA

consensusID : consensus_5459#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 273
fasta sequence

                              [CTCTCTTCCCCCCCCCCCNGGNGCCCNNGGGTCCAGTTCCATNTAATNAGNTTNTNGTCGAGATGGGCCGAAAGTTNTTNGTTGGTGGNAACTGGAAATGAAANGGGACCANTGATCAGGTGGACAAAATTGTGAAAATTNTGAATGAGGGANAGATTGNTTTTANAGATGTTGTTGAGGTGGTTGTAAGCCCACCTTATGTGTTCCTTCCCGTGGTNAAGAGTNAGNTGTGCCCGGAGATCCAAGTTGCTGNTCAGAATTGTTGGGTGAAGA]

[+] EMBL OSC107601            [CTCTCTTCCCCCCCCCCCNGGNGCCCNNGGGTCCAGTTCCATNTAATNAGNTTNTNGTCGAGATGGGCCGAAAGTTNTTNGTTGGTGGNAACTGGAAATGAAANGGGACCANTGATCAGGTGGACAAAATTGTGAAAATTNTGAATGAGGGANAGATTGNTTTTANAGATGTTGTTGAGGTGGTTGTAAGCCCACCTTATGTGTTCCTTCCCGTGGTNAAGAGTNAGNTGTGCCCGGAGATCCAAGTTGCTGNTCAGAATTGTTGGGTGAAGA]




>consensus_5459#1
CTCTCTTCCCCCCCCCCCNGGNGCCCNNGGGTCCAGTTCCATNTAATNAGNTTNTNGTCG
AGATGGGCCGAAAGTTNTTNGTTGGTGGNAACTGGAAATGAAANGGGACCANTGATCAGG
TGGACAAAATTGTGAAAATTNTGAATGAGGGANAGATTGNTTTTANAGATGTTGTTGAGG
TGGTTGTAAGCCCACCTTATGTGTTCCTTCCCGTGGTNAAGAGTNAGNTGTGCCCGGAGA
TCCAAGTTGCTGNTCAGAATTGTTGGGTGAAGA

consensusID : consensus_5459#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 212
fasta sequence

                              [CTCCAGCTCTCTTCCCCCCNCCCCNTTGNCCCCCGGGTCCAGTTCCATNTAATNAGNTTNTNGTCGAGATGGGCCGNAAGTTNTTNGTTGGNGGNAACTGGAAATGCAACGGGNCCACTGATCAGGTGGACAAAATTNTGAAAATTNTGAATGAGGGACANATTGCTTNTANANATGTTGTTGAGGTGGTTGTNAGCCCACCTTATGTGTTC]

[+] EMBL AU097690             [CTCCAGCTCTCTTCCCCCCNCCCCNTTGNCCCCCGGGTCCAGTTCCATNTAATNAGNTTNTNGTCGAGATGGGCCGNAAGTTNTTNGTTGGNGGNAACTGGAAATGCAACGGGNCCACTGATCAGGTGGACAAAATTNTGAAAATTNTGAATGAGGGACANATTGCTTNTANANATGTTGTTGAGGTGGTTGTNAGCCCACCTTATGTGTTC]




>consensus_5459#2
CTCCAGCTCTCTTCCCCCCNCCCCNTTGNCCCCCGGGTCCAGTTCCATNTAATNAGNTTN
TNGTCGAGATGGGCCGNAAGTTNTTNGTTGGNGGNAACTGGAAATGCAACGGGNCCACTG
ATCAGGTGGACAAAATTNTGAAAATTNTGAATGAGGGACANATTGCTTNTANANATGTTG
TTGAGGTGGTTGTNAGCCCACCTTATGTGTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5459#0      ------CTCTCTTCCCCCCCCCCCNTTNGCCCCNGGGTCCAGTTCCATNTAATAAGNTTT 54
consensus_5459#1      ------CTCTCTTCCCCCCCCCCCNGGNGCCCNNGGGTCCAGTTCCATNTAATNAGNTTN 54
consensus_5459#2      CTCCAGCTCTCTTCCCCCCNCCCCNTTGNCCCCCGGGTCCAGTTCCATNTAATNAGNTTN 60
                            ************* *****    ***  ******************* ***** 

consensus_5459#0      TNGTNGAGATGGGCCGAAAGTTNTTNGTTGGTGGAAANTGGAAATGNAANGGGACCANTG 114
consensus_5459#1      TNGTCGAGATGGGCCGAAAGTTNTTNGTTGGTGGNAACTGGAAATGAAANGGGACCANTG 114
consensus_5459#2      TNGTCGAGATGGGCCGNAAGTTNTTNGTTGGNGGNAACTGGAAATGCAACGGGNCCACTG 120
                      **** *********** ************** ** ** ******** ** *** *** **

consensus_5459#0      ATNAGGTGGACAAAATTNTNAAAATTNTGAATGAGGGANANATTGNTTNTANAGATGTTG 174
consensus_5459#1      ATCAGGTGGACAAAATTGTGAAAATTNTGAATGAGGGANAGATTGNTTTTANAGATGTTG 174
consensus_5459#2      ATCAGGTGGACAAAATTNTGAAAATTNTGAATGAGGGACANATTGCTTNTANANATGTTG 180
                      ** ************** * ****************** * **** ** **** ******

consensus_5459#0      TTGAGGTGGTTNTAAGCCCACCTTATGTGTTCCTTCCCGTGGTNAAGAGTNANCTGNGNC 234
consensus_5459#1      TTGAGGTGGTTGTAAGCCCACCTTATGTGTTCCTTCCCGTGGTNAAGAGTNAGNTGTGCC 234
consensus_5459#2      TTGAGGTGGTTGTNAGCCCACCTTATGTGTTC---------------------------- 212
                      *********** * ******************                            

consensus_5459#0      CGGAGATCCAAGTTGCTGCTCAAAATTNTTGGGTNAAGAAGGGNGGGGGTTTNA 288
consensus_5459#1      CGGAGATCCAAGTTGCTGNTCAGAATTGTTGGGTGAAGA--------------- 273
consensus_5459#2      ------------------------------------------------------