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Oryza sativa
cluster # 5469 cluster # 5469       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5469#0 length = 2645 sequences # 2  
 consensus_5469#1 length = 825 sequences # 1  
consensusID : consensus_5469#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2645
fasta sequence 
                              [CGGACACAAAGCCCCACTAAAGTATTCATTCGTTCACAATTCACAAGCCGTCAAGCACTGTGCCATTATCCCCAATAAGTAGTACTCCACCACGCCTTCTCTCTTCTTCCTCTCCTCTCCTCTCCTCCGCTTCACCTCCGTTTCTTTCATCGTCTATCTCTTTCTCCCCAACACAGCGGGCGAACCAAATCCGTCGTCTCGCCGGGGTCCGGGACCACCTCGTCGCATGCGCGCTGGGTCGTAGACTTGGCCGCCGGCGATCGCCGGAGTTGGGGAGCGCGGCGGCGGCGGTTCCGCTCTCGCCGGAGCGAGGGGTGGGTGGAGGATGGCGGCGGGAGGGAAGGGGTGGGTGGAGAGGGCGCGGCGCGGGGTGAAGACGGCGTGGTTCATGGTGGCCATGGTGGCGTCGCTGCTGATGGCGTCGGCGCCGGCGCTGGTGGCCGCCGGCGACGTGGCCGTCGCGCTGTGGCTCGAGGTGCGGCTCGGGTGCCTCCGCTGCCACGGCCTGCGCGGCCACCTCGAGCGTTACGGCTTCCGGAGCTCGCTCGTGGACATACCGCTTGTCTCCATCGCTCGATCCGTCGTCATTACCTGTGTATACCTCATGTCTGATGCTTCTGGGCTCTCCCATGGCCCGTACCTTGGAACAGCAACTTGCTGTTCCCTGGCTTCTCTGCTCATCTTGTTGATTAAGGCCAGCGTTTACAGTCCGGCGCAGGAGATTGGGCCTGAGCTCTCGCCGTCATTGGCGGATCACAAGCTCAGTCTCAAGAAGCTATCGGGAATGCCGGTGCTTTTCCTGTCCTCCTTGGTCTTTGCTCTTGGCCATGTTGTTGTCGCTTACAGGACAAGCTGCAGGGCTCGGCGGAAGCTGCTTATCCATGGCATTGACCCTGAATCTATTCTGGCATACAAGAATGCATATCCTGGATGCTACAAGACTCCTCGATCTCCCACACCATACAGTGGAAAATTTTATTCTAGGAGTGACAGTGAGACGAAGAGAAAATCTGTTGCTCACGACGATAGGGATATTCCAATCAGTTTCCTTGCAGACGGTGATAGCATGTTCATTGCTTGCCAGGGGATCACTGTGCATTACAAACTTTCCGATCCATCGAGTTGCATATCTTCAGCTACAGACACTTTTCCAGAAATCCATCATGATGTTATTTCAGCAAGCATTTCTCCTAGAAGACAGAGACATGATAGCCCACCATCAGCCTCCACTAATACCCGTCGTCTTTTGAATAGGAGCTTCAGCCATCAATACCATCAGACATCGCTATATGCACCATTGTTGGTAGAGCCAGTGACCTCTCCAACTTTGTCGGATGACACCCCTGTTCTTAGTGTTGATGATGGCAGTGCTGATGTATGTTTGAAACCTATGGGATTTGATCTTGAGGCTGGAGAACAGGGGAAATTTGCTGTTGTTTTGGTGCATGGGTTTGGAGGTGGGGTGTTCTCATGGAGACACGTTACAAATTTGCTTTCTCGTCAAGTGGGTTGCACTGTGCTGGCCTTCGATCGCCCTGGATGGGGGTTAACATCTCGACCTCGCAGAAAGGATTGGGAAGACAAAAATCTACCAAATCCATATGAGCTTGGATCTCAGGTTGATCTTCTTATTTCATTTTGCTCGGACATGGGCTTACGCTCTGTGGTTTTAGTTGGTCATGATGATGGGGGCCTGCTTGCCCTAAAAGCTGCAGAAAAGTTGCGAGCATCTGGAGATTCAAGAAAGGTTGAAGTGAAGGGAGTTGTGCTTATAGGTGTAAGCTTATCAAGAGAAGTCATTCCTGCATTTGCTCGTATACTCCTGCATACCCCTCTAAGGAAAAAGCACATGGTACGGCCACTGTTACGTACTGAAATCACTCAGGTGATCAATAGACGTGCATGGTTTGATGCTACCAAGTTAACAACAGATGTTCTGAACCTCTACAAGGCTCCACTATTTGTTGAAGGCTGGGATGAAGCTCTCCATGAAGTAGGACGTCTTTCTTTCTCGACTGTCCTATCATCAAAAAGAGCAGCAGATTTACTAAGATCAGTGGAAGACCTCCCTGTTCTGGTTGTAGCAGGCTCTGAGGATGCTCTTGTTTCTTCGAAGTCAACGCAAGTAATGGCTTCAAGGCTTGTAAATTCTAGGCTGGTAACGATATCAAATTGTGGGCATTTGCCACATGAGGAGTGTCCCAAGGCATTGCTTTCGGCTCTTTCTCCATTCATATCAGGACTGGTGTCATCAGATGATTCATTGCAAAGATTGTAGCATACTAGTTCTTTTCGTTTTGCCTTTTGCCCTGTCTTTCTGTCCTCTACACTGAGTAGATCTCTCTAGTTGGTGTGAGTTTGTGTGAGCCAATGTAGTGCAGTAGTGGAGCCTGACCCAAAATCTCAAGGGTTCCTAGAGCTCCTCTAATTTTTTGCCCCATATAATGATACCTCCGAATGATTTCAATTAAGCAAGTTGAATCTGTACAGCACAGGCTTGCTGTGTTCAGTTCATGTCTACTCCAGCTCCAGCTGTCATATATCAGCTAACTACTGACTACTAGTAATATGCCCGTGCTAAACGCTACGGTGCAACTCTATTTGTCTNTAATAATTTTTAAAATTTTCATGTTTAGCAAAAAAAA]

[+] EMBL AK100691             [CGGACACAAAGCCCCACTAAAGTATTCATTCGTTCACAATTCACAAGCCGTCAAGCACTGTGCCATTATCCCCAATAAGTAGTACTCCACCACGCCTTCTCTCTTCTTCCTCTCCTCTCCTCTCCTCCGCTTCACCTCCGTTTCTTTCATCGTCTATCTCTTTCTCCCCAACACAGCGGGCGAACCAAATCCGTCGTCTCGCCGGGGTCCGGGACCACCTCGTCGCATGCGCGCTGGGTCGTAGACTTGGCCGCCGGCGATCGCCGGAGTTGGGGAGCGCGGCGGCGGCGGTTCCGCTCTCGCCGGAGCGAGGGGTGGGTGGAGGATGGCGGCGGGAGGGAAGGGGTGGGTGGAGAGGGCGCGGCGCGGGGTGAAGACGGCGTGGTTCATGGTGGCCATGGTGGCGTCGCTGCTGATGGCGTCGGCGCCGGCGCTGGTGGCCGCCGGCGACGTGGCCGTCGCGCTGTGGCTCGAGGTGCGGCTCGGGTGCCTCCGCTGCCACGGCCTGCGCGGCCACCTCGAGCGTTACGGCTTCCGGAGCTCGCTCGTGGACATACCGCTTGTCTCCATCGCTCGATCCGTCGTCATTACCTGTGTATACCTCATGTCTGATGCTTCTGGGCTCTCCCATGGCCCGTACCTTGGAACAGCAACTTGCTGTTCCCTGGCTTCTCTGCTCATCTTGTTGATTAAGGCCAGCGTTTACAGTCCGGCGCAGGAGATTGGGCCTGAGCTCTCGCCGTCATTGGCGGATCACAAGCTCAGTCTCAAGAAGCTATCGGGAATGCCGGTGCTTTTCCTGTCCTCCTTGGTCTTTGCTCTTGGCCATGTTGTTGTCGCTTACAGGACAAGCTGCAGGGCTCGGCGGAAGCTGCTTATCCATGGCATTGACCCTGAATCTATTCTGGCATACAAGAATGCATATCCTGGATGCTACAAGACTCCTCGATCTCCCACACCATACAGTGGAAAATTTTATTCTAGGAGTGACAGTGAGACGAAGAGAAAATCTGTTGCTCACGACGATAGGGATATTCCAATCAGTTTCCTTGCAGACGGTGATAGCATGTTCATTGCTTGCCAGGGGATCACTGTGCATTACAAACTTTCCGATCCATCGAGTTGCATATCTTCAGCTACAGACACTTTTCCAGAAATCCATCATGATGTTATTTCAGCAAGCATTTCTCCTAGAAGACAGAGACATGATAGCCCACCATCAGCCTCCACTAATACCCGTCGTCTTTTGAATAGGAGCTTCAGCCATCAATACCATCAGACATCGCTATATGCACCATTGTTGGTAGAGCCAGTGACCTCTCCAACTTTGTCGGATGACACCCCTGTTCTTAGTGTTGATGATGGCAGTGCTGATGTATGTTTGAAACCTATGGGATTTGATCTTGAGGCTGGAGAACAGGGGAAATTTGCTGTTGTTTTGGTGCATGGGTTTGGAGGTGGGGTGTTCTCATGGAGACACGTTACAAATTTGCTTTCTCGTCAAGTGGGTTGCACTGTGCTGGCCTTCGATCGCCCTGGATGGGGGTTAACATCTCGACCTCGCAGAAAGGATTGGGAAGACAAAAATCTACCAAATCCATATGAGCTTGGATCTCAGGTTGATCTTCTTATTTCATTTTGCTCGGACATGGGCTTACGCTCTGTGGTTTTAGTTGGTCATGATGATGGGGGCCTGCTTGCCCTAAAAGCTGCAGAAAAGTTGCGAGCATCTGGAGATTCAAGAAAGGTTGAAGTGAAGGGAGTTGTGCTTATAGGTGTAAGCTTATCAAGAGAAGTCATTCCTGCATTTGCTCGTATACTCCTGCATACCCCTCTAAGGAAAAAGCACATGGTACGGCCACTGTTACGTACTGAAATCACTCAGGTGATCAATAGACGTGCATGGTTTGATGCTACCAAGTTAACAACAGATGTTCTGAACCTCTACAAGGCTCCACTATTTGTTGAAGGCTGGGATGAAGCTCTCCATGAAGTAGGACGTCTTTCTTTCTCGACTGTCCTATCATCAAAAAGAGCAGCAGATTTACTAAGATCAGTGGAAGACCTCCCTGTTCTGGTTGTAGCAGGCTCTGAGGATGCTCTTGTTTCTTCGAAGTCAACGCAAGTAATGGCTTCAAGGCTTGTAAATTCTAGGCTGGTAACGATATCAAATTGTGGGCATTTGCCACATGAGGAGTGTCCCAAGGCATTGCTTTCGGCTCTTTCTCCATTCATATCAGGACTGGTGTCATCAGATGATTCATTGCAAAGATTGTAGCATACTAGTTCTTTTCGTTTTGCCTTTTGCCCTGTCTTTCTGTCCTCTACACTGAGTAGATCTCTCTAGTTGGTGTGAGTTTGTGTGAGCCAATGTAGTGCAGTAGTGGAGCCTGACCCAAAATCTCAAGGGTTCCTAGAGCTCCTCTAATTTTTTGCCCCATATAATGATACCTCCGAATGATTTCAATTAAGCAAGTTGAATCTGTACAGCACAGGCTTGCTG                                                                                                                                              ]
[+] EMBL CA757413             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGTAGGACGTCTTTCTTTCTCGACTGTCCTATCATCAAAAAGAGCAGCAGATTTACTAAGATCAGTGGAAGACCTCCCTGTTCTGGTTGTAGCAGGCTCTGAGGATGCTCTTGTTTCTTCGAAGTCAACGCAAGTAATGGCTTCAAGGCTTGTAAATTCTAGGCTGGTAACGATATCAAATTGTGGGCATTTGCCACATGAGGAGTGTCCCAAGGCATTGCTTTCGGCTCTTTCTCCATTCATATCAGGACTGGTGTCATCAGATGATTCATTGCAAAGATTGTAGCATACTAGTTCTTTTCGTTTTGCCTTTTGCCCTGTCTTTCTGTCCTCTACACTGAGTAGATCTCTCTAGTTGGTGTGAGTTTGTGTGAGCCAATGTAGTGCAGTAGTGGAGCCTGACCCAAAATCTCAAGGGTTCCTAGAGCTCCTCTAATTTTTTGCCCCATATAATGATACCTCCGAATGATTTCAATTAAGCAAGTTGAATCTGTACAGCACAGGCTTGCTGTGTTCAGTTCATGTCTACTCCAGCTCCAGCTGTCATATATCAGCTAACTACTGACTACTAGTAATATGCCCGTGCTAAACGCTACGGTGCAACTCTATTTGTCTNTAATAATTTTTAAAATTTTCATGTTTAGCAAAAAAAA]




>consensus_5469#0
CGGACACAAAGCCCCACTAAAGTATTCATTCGTTCACAATTCACAAGCCGTCAAGCACTG
TGCCATTATCCCCAATAAGTAGTACTCCACCACGCCTTCTCTCTTCTTCCTCTCCTCTCC
TCTCCTCCGCTTCACCTCCGTTTCTTTCATCGTCTATCTCTTTCTCCCCAACACAGCGGG
CGAACCAAATCCGTCGTCTCGCCGGGGTCCGGGACCACCTCGTCGCATGCGCGCTGGGTC
GTAGACTTGGCCGCCGGCGATCGCCGGAGTTGGGGAGCGCGGCGGCGGCGGTTCCGCTCT
CGCCGGAGCGAGGGGTGGGTGGAGGATGGCGGCGGGAGGGAAGGGGTGGGTGGAGAGGGC
GCGGCGCGGGGTGAAGACGGCGTGGTTCATGGTGGCCATGGTGGCGTCGCTGCTGATGGC
GTCGGCGCCGGCGCTGGTGGCCGCCGGCGACGTGGCCGTCGCGCTGTGGCTCGAGGTGCG
GCTCGGGTGCCTCCGCTGCCACGGCCTGCGCGGCCACCTCGAGCGTTACGGCTTCCGGAG
CTCGCTCGTGGACATACCGCTTGTCTCCATCGCTCGATCCGTCGTCATTACCTGTGTATA
CCTCATGTCTGATGCTTCTGGGCTCTCCCATGGCCCGTACCTTGGAACAGCAACTTGCTG
TTCCCTGGCTTCTCTGCTCATCTTGTTGATTAAGGCCAGCGTTTACAGTCCGGCGCAGGA
GATTGGGCCTGAGCTCTCGCCGTCATTGGCGGATCACAAGCTCAGTCTCAAGAAGCTATC
GGGAATGCCGGTGCTTTTCCTGTCCTCCTTGGTCTTTGCTCTTGGCCATGTTGTTGTCGC
TTACAGGACAAGCTGCAGGGCTCGGCGGAAGCTGCTTATCCATGGCATTGACCCTGAATC
TATTCTGGCATACAAGAATGCATATCCTGGATGCTACAAGACTCCTCGATCTCCCACACC
ATACAGTGGAAAATTTTATTCTAGGAGTGACAGTGAGACGAAGAGAAAATCTGTTGCTCA
CGACGATAGGGATATTCCAATCAGTTTCCTTGCAGACGGTGATAGCATGTTCATTGCTTG
CCAGGGGATCACTGTGCATTACAAACTTTCCGATCCATCGAGTTGCATATCTTCAGCTAC
AGACACTTTTCCAGAAATCCATCATGATGTTATTTCAGCAAGCATTTCTCCTAGAAGACA
GAGACATGATAGCCCACCATCAGCCTCCACTAATACCCGTCGTCTTTTGAATAGGAGCTT
CAGCCATCAATACCATCAGACATCGCTATATGCACCATTGTTGGTAGAGCCAGTGACCTC
TCCAACTTTGTCGGATGACACCCCTGTTCTTAGTGTTGATGATGGCAGTGCTGATGTATG
TTTGAAACCTATGGGATTTGATCTTGAGGCTGGAGAACAGGGGAAATTTGCTGTTGTTTT
GGTGCATGGGTTTGGAGGTGGGGTGTTCTCATGGAGACACGTTACAAATTTGCTTTCTCG
TCAAGTGGGTTGCACTGTGCTGGCCTTCGATCGCCCTGGATGGGGGTTAACATCTCGACC
TCGCAGAAAGGATTGGGAAGACAAAAATCTACCAAATCCATATGAGCTTGGATCTCAGGT
TGATCTTCTTATTTCATTTTGCTCGGACATGGGCTTACGCTCTGTGGTTTTAGTTGGTCA
TGATGATGGGGGCCTGCTTGCCCTAAAAGCTGCAGAAAAGTTGCGAGCATCTGGAGATTC
AAGAAAGGTTGAAGTGAAGGGAGTTGTGCTTATAGGTGTAAGCTTATCAAGAGAAGTCAT
TCCTGCATTTGCTCGTATACTCCTGCATACCCCTCTAAGGAAAAAGCACATGGTACGGCC
ACTGTTACGTACTGAAATCACTCAGGTGATCAATAGACGTGCATGGTTTGATGCTACCAA
GTTAACAACAGATGTTCTGAACCTCTACAAGGCTCCACTATTTGTTGAAGGCTGGGATGA
AGCTCTCCATGAAGTAGGACGTCTTTCTTTCTCGACTGTCCTATCATCAAAAAGAGCAGC
AGATTTACTAAGATCAGTGGAAGACCTCCCTGTTCTGGTTGTAGCAGGCTCTGAGGATGC
TCTTGTTTCTTCGAAGTCAACGCAAGTAATGGCTTCAAGGCTTGTAAATTCTAGGCTGGT
AACGATATCAAATTGTGGGCATTTGCCACATGAGGAGTGTCCCAAGGCATTGCTTTCGGC
TCTTTCTCCATTCATATCAGGACTGGTGTCATCAGATGATTCATTGCAAAGATTGTAGCA
TACTAGTTCTTTTCGTTTTGCCTTTTGCCCTGTCTTTCTGTCCTCTACACTGAGTAGATC
TCTCTAGTTGGTGTGAGTTTGTGTGAGCCAATGTAGTGCAGTAGTGGAGCCTGACCCAAA
ATCTCAAGGGTTCCTAGAGCTCCTCTAATTTTTTGCCCCATATAATGATACCTCCGAATG
ATTTCAATTAAGCAAGTTGAATCTGTACAGCACAGGCTTGCTGTGTTCAGTTCATGTCTA
CTCCAGCTCCAGCTGTCATATATCAGCTAACTACTGACTACTAGTAATATGCCCGTGCTA
AACGCTACGGTGCAACTCTATTTGTCTNTAATAATTTTTAAAATTTTCATGTTTAGCAAA
AAAAA

consensusID : consensus_5469#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 825
fasta sequence 
                              [GGTTTTAGTTGGTCATGATGATGGNGGCCTGCTTGCCCTAAAAGCTGCAGAAAAGTTGCGAGCATCTGGAGATTCAAGAAAGGTTGAAGTGAAGGGAGTTGTGCTTATAGGTGTAAGCTTATCAAGAGAAGTCATTCCTGCATTTGCTCGTATCCTTCTGCATACCCCTCTAAGGANAAAGCACATGGTACGGCCACTGTTACGTACTGAAATCACTCAGGTGATCAATAGACGTGCATGGTTTGATGCTACCAAGTTAACAACAGATGTTCTGAACCTCTACAAGGCTCCACTATTTGTTGAAGGCTGGGATGAAGCTCTCCATGAAGTAGGACGTCTTTCTTTCTCGACTGTCCTATCATCAAAAAGAGCAGCAGATNTACTAAGATCAGTGGAAGAACCTCCTTGTTCTGGTTGTAGCANGCTCTGANGATGCTCTNGTTTCTTTCAAGTCAACGCAAGTAATGGCTTCAAGGCTTGTAATTCTAGGCTGGTACGATATCAAATGTGGCATTTGCACATTANGATGTCCANGCATGCTTCNGTCTTCTCATTATATCNGACTGTGTATCAATGATCATTGCAAGATTGACATTGTAGTCCTTTGTTTGCTTTTGGCTTGCTCTGCTCTAACTGATAACTCTTAATGGGGAATTGGGACCATATCCATATGACTCTCCAATTCAGGTCTAACTCTTATTTTGCCTTAGACCTCATATTATTCAATGACTTCACAGTGATGGATAGTGTCAACCCCTGTTAAGATGATATTTTTGCAGGCGGCATATTTTAGAATTGGTGAATTTAATCGTGTATAAAGGCGAC]

[+] EMBL AW155057             [GGTTTTAGTTGGTCATGATGATGGNGGCCTGCTTGCCCTAAAAGCTGCAGAAAAGTTGCGAGCATCTGGAGATTCAAGAAAGGTTGAAGTGAAGGGAGTTGTGCTTATAGGTGTAAGCTTATCAAGAGAAGTCATTCCTGCATTTGCTCGTATCCTTCTGCATACCCCTCTAAGGANAAAGCACATGGTACGGCCACTGTTACGTACTGAAATCACTCAGGTGATCAATAGACGTGCATGGTTTGATGCTACCAAGTTAACAACAGATGTTCTGAACCTCTACAAGGCTCCACTATTTGTTGAAGGCTGGGATGAAGCTCTCCATGAAGTAGGACGTCTTTCTTTCTCGACTGTCCTATCATCAAAAAGAGCAGCAGATNTACTAAGATCAGTGGAAGAACCTCCTTGTTCTGGTTGTAGCANGCTCTGANGATGCTCTNGTTTCTTTCAAGTCAACGCAAGTAATGGCTTCAAGGCTTGTAATTCTAGGCTGGTACGATATCAAATGTGGCATTTGCACATTANGATGTCCANGCATGCTTCNGTCTTCTCATTATATCNGACTGTGTATCAATGATCATTGCAAGATTGACATTGTAGTCCTTTGTTTGCTTTTGGCTTGCTCTGCTCTAACTGATAACTCTTAATGGGGAATTGGGACCATATCCATATGACTCTCCAATTCAGGTCTAACTCTTATTTTGCCTTAGACCTCATATTATTCAATGACTTCACAGTGATGGATAGTGTCAACCCCTGTTAAGATGATATTTTTGCAGGCGGCATATTTTAGAATTGGTGAATTTAATCGTGTATAAAGGCGAC]




>consensus_5469#1
GGTTTTAGTTGGTCATGATGATGGNGGCCTGCTTGCCCTAAAAGCTGCAGAAAAGTTGCG
AGCATCTGGAGATTCAAGAAAGGTTGAAGTGAAGGGAGTTGTGCTTATAGGTGTAAGCTT
ATCAAGAGAAGTCATTCCTGCATTTGCTCGTATCCTTCTGCATACCCCTCTAAGGANAAA
GCACATGGTACGGCCACTGTTACGTACTGAAATCACTCAGGTGATCAATAGACGTGCATG
GTTTGATGCTACCAAGTTAACAACAGATGTTCTGAACCTCTACAAGGCTCCACTATTTGT
TGAAGGCTGGGATGAAGCTCTCCATGAAGTAGGACGTCTTTCTTTCTCGACTGTCCTATC
ATCAAAAAGAGCAGCAGATNTACTAAGATCAGTGGAAGAACCTCCTTGTTCTGGTTGTAG
CANGCTCTGANGATGCTCTNGTTTCTTTCAAGTCAACGCAAGTAATGGCTTCAAGGCTTG
TAATTCTAGGCTGGTACGATATCAAATGTGGCATTTGCACATTANGATGTCCANGCATGC
TTCNGTCTTCTCATTATATCNGACTGTGTATCAATGATCATTGCAAGATTGACATTGTAG
TCCTTTGTTTGCTTTTGGCTTGCTCTGCTCTAACTGATAACTCTTAATGGGGAATTGGGA
CCATATCCATATGACTCTCCAATTCAGGTCTAACTCTTATTTTGCCTTAGACCTCATATT
ATTCAATGACTTCACAGTGATGGATAGTGTCAACCCCTGTTAAGATGATATTTTTGCAGG
CGGCATATTTTAGAATTGGTGAATTTAATCGTGTATAAAGGCGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5469#0      CGGACACAAAGCCCCACTAAAGTATTCATTCGTTCACAATTCACAAGCCGTCAAGCACTG 60
consensus_5469#1      ------------------------------------------------------------
                                                                                  

consensus_5469#0      TGCCATTATCCCCAATAAGTAGTACTCCACCACGCCTTCTCTCTTCTTCCTCTCCTCTCC 120
consensus_5469#1      ------------------------------------------------------------
                                                                                  

consensus_5469#0      TCTCCTCCGCTTCACCTCCGTTTCTTTCATCGTCTATCTCTTTCTCCCCAACACAGCGGG 180
consensus_5469#1      ------------------------------------------------------------
                                                                                  

consensus_5469#0      CGAACCAAATCCGTCGTCTCGCCGGGGTCCGGGACCACCTCGTCGCATGCGCGCTGGGTC 240
consensus_5469#1      ------------------------------------------------------------
                                                                                  

consensus_5469#0      GTAGACTTGGCCGCCGGCGATCGCCGGAGTTGGGGAGCGCGGCGGCGGCGGTTCCGCTCT 300
consensus_5469#1      ------------------------------------------------------------
                                                                                  

consensus_5469#0      CGCCGGAGCGAGGGGTGGGTGGAGGATGGCGGCGGGAGGGAAGGGGTGGGTGGAGAGGGC 360
consensus_5469#1      ------------------------------------------------------------
                                                                                  

consensus_5469#0      GCGGCGCGGGGTGAAGACGGCGTGGTTCATGGTGGCCATGGTGGCGTCGCTGCTGATGGC 420
consensus_5469#1      ------------------------------------------------------------
                                                                                  

consensus_5469#0      GTCGGCGCCGGCGCTGGTGGCCGCCGGCGACGTGGCCGTCGCGCTGTGGCTCGAGGTGCG 480
consensus_5469#1      ------------------------------------------------------------
                                                                                  

consensus_5469#0      GCTCGGGTGCCTCCGCTGCCACGGCCTGCGCGGCCACCTCGAGCGTTACGGCTTCCGGAG 540
consensus_5469#1      ------------------------------------------------------------
                                                                                  

consensus_5469#0      CTCGCTCGTGGACATACCGCTTGTCTCCATCGCTCGATCCGTCGTCATTACCTGTGTATA 600
consensus_5469#1      ------------------------------------------------------------
                                                                                  

consensus_5469#0      CCTCATGTCTGATGCTTCTGGGCTCTCCCATGGCCCGTACCTTGGAACAGCAACTTGCTG 660
consensus_5469#1      ------------------------------------------------------------
                                                                                  

consensus_5469#0      TTCCCTGGCTTCTCTGCTCATCTTGTTGATTAAGGCCAGCGTTTACAGTCCGGCGCAGGA 720
consensus_5469#1      ------------------------------------------------------------
                                                                                  

consensus_5469#0      GATTGGGCCTGAGCTCTCGCCGTCATTGGCGGATCACAAGCTCAGTCTCAAGAAGCTATC 780
consensus_5469#1      ------------------------------------------------------------
                                                                                  

consensus_5469#0      GGGAATGCCGGTGCTTTTCCTGTCCTCCTTGGTCTTTGCTCTTGGCCATGTTGTTGTCGC 840
consensus_5469#1      ------------------------------------------------------------
                                                                                  

consensus_5469#0      TTACAGGACAAGCTGCAGGGCTCGGCGGAAGCTGCTTATCCATGGCATTGACCCTGAATC 900
consensus_5469#1      ------------------------------------------------------------
                                                                                  

consensus_5469#0      TATTCTGGCATACAAGAATGCATATCCTGGATGCTACAAGACTCCTCGATCTCCCACACC 960
consensus_5469#1      ------------------------------------------------------------
                                                                                  

consensus_5469#0      ATACAGTGGAAAATTTTATTCTAGGAGTGACAGTGAGACGAAGAGAAAATCTGTTGCTCA 1020
consensus_5469#1      ------------------------------------------------------------
                                                                                  

consensus_5469#0      CGACGATAGGGATATTCCAATCAGTTTCCTTGCAGACGGTGATAGCATGTTCATTGCTTG 1080
consensus_5469#1      ------------------------------------------------------------
                                                                                  

consensus_5469#0      CCAGGGGATCACTGTGCATTACAAACTTTCCGATCCATCGAGTTGCATATCTTCAGCTAC 1140
consensus_5469#1      ------------------------------------------------------------
                                                                                  

consensus_5469#0      AGACACTTTTCCAGAAATCCATCATGATGTTATTTCAGCAAGCATTTCTCCTAGAAGACA 1200
consensus_5469#1      ------------------------------------------------------------
                                                                                  

consensus_5469#0      GAGACATGATAGCCCACCATCAGCCTCCACTAATACCCGTCGTCTTTTGAATAGGAGCTT 1260
consensus_5469#1      ------------------------------------------------------------
                                                                                  

consensus_5469#0      CAGCCATCAATACCATCAGACATCGCTATATGCACCATTGTTGGTAGAGCCAGTGACCTC 1320
consensus_5469#1      ------------------------------------------------------------
                                                                                  

consensus_5469#0      TCCAACTTTGTCGGATGACACCCCTGTTCTTAGTGTTGATGATGGCAGTGCTGATGTATG 1380
consensus_5469#1      ------------------------------------------------------------
                                                                                  

consensus_5469#0      TTTGAAACCTATGGGATTTGATCTTGAGGCTGGAGAACAGGGGAAATTTGCTGTTGTTTT 1440
consensus_5469#1      ------------------------------------------------------------
                                                                                  

consensus_5469#0      GGTGCATGGGTTTGGAGGTGGGGTGTTCTCATGGAGACACGTTACAAATTTGCTTTCTCG 1500
consensus_5469#1      ------------------------------------------------------------
                                                                                  

consensus_5469#0      TCAAGTGGGTTGCACTGTGCTGGCCTTCGATCGCCCTGGATGGGGGTTAACATCTCGACC 1560
consensus_5469#1      ------------------------------------------------------------
                                                                                  

consensus_5469#0      TCGCAGAAAGGATTGGGAAGACAAAAATCTACCAAATCCATATGAGCTTGGATCTCAGGT 1620
consensus_5469#1      ------------------------------------------------------------
                                                                                  

consensus_5469#0      TGATCTTCTTATTTCATTTTGCTCGGACATGGGCTTACGCTCTGTGGTTTTAGTTGGTCA 1680
consensus_5469#1      ---------------------------------------------GGTTTTAGTTGGTCA 15
                                                                   ***************

consensus_5469#0      TGATGATGGGGGCCTGCTTGCCCTAAAAGCTGCAGAAAAGTTGCGAGCATCTGGAGATTC 1740
consensus_5469#1      TGATGATGGNGGCCTGCTTGCCCTAAAAGCTGCAGAAAAGTTGCGAGCATCTGGAGATTC 75
                      ********* **************************************************

consensus_5469#0      AAGAAAGGTTGAAGTGAAGGGAGTTGTGCTTATAGGTGTAAGCTTATCAAGAGAAGTCAT 1800
consensus_5469#1      AAGAAAGGTTGAAGTGAAGGGAGTTGTGCTTATAGGTGTAAGCTTATCAAGAGAAGTCAT 135
                      ************************************************************

consensus_5469#0      TCCTGCATTTGCTCGTATACTCCTGCATACCCCTCTAAGGAAAAAGCACATGGTACGGCC 1860
consensus_5469#1      TCCTGCATTTGCTCGTATCCTTCTGCATACCCCTCTAAGGANAAAGCACATGGTACGGCC 195
                      ****************** ** ******************* ******************

consensus_5469#0      ACTGTTACGTACTGAAATCACTCAGGTGATCAATAGACGTGCATGGTTTGATGCTACCAA 1920
consensus_5469#1      ACTGTTACGTACTGAAATCACTCAGGTGATCAATAGACGTGCATGGTTTGATGCTACCAA 255
                      ************************************************************

consensus_5469#0      GTTAACAACAGATGTTCTGAACCTCTACAAGGCTCCACTATTTGTTGAAGGCTGGGATGA 1980
consensus_5469#1      GTTAACAACAGATGTTCTGAACCTCTACAAGGCTCCACTATTTGTTGAAGGCTGGGATGA 315
                      ************************************************************

consensus_5469#0      AGCTCTCCATGAAGTAGGACGTCTTTCTTTCTCGACTGTCCTATCATCAAAAAGAGCAGC 2040
consensus_5469#1      AGCTCTCCATGAAGTAGGACGTCTTTCTTTCTCGACTGTCCTATCATCAAAAAGAGCAGC 375
                      ************************************************************

consensus_5469#0      AGATTTACTAAGATCAGTGGAAGA-CCTCCCTGTTCTGGTTGTAGCAGGCTCTGAGGATG 2099
consensus_5469#1      AGATNTACTAAGATCAGTGGAAGAACCTCCTTGTTCTGGTTGTAGCANGCTCTGANGATG 435
                      **** ******************* ***** **************** ******* ****

consensus_5469#0      CTCTTGTTTCTTCGAAGTCAACGCAAGTAATGGCTTCAAGGCTTGTAAATTCTAGGCTGG 2159
consensus_5469#1      CTCTNGTTTCTTTCAAGTCAACGCAAGTAATGGCTTCAAGGCTTGTAA-TTCTAGGCTGG 494
                      **** *******  ********************************** ***********

consensus_5469#0      TAACGATATCAAATTGTGGGCATTTGCCACATGAGGAGTGTCCCAAGGCATTGCTTTCGG 2219
consensus_5469#1      TA-CGATATCAAAT-GTGG-CATTTGC-ACATTANGA-TGTCC--ANGCAT-GCTTCNGT 546
                      ** *********** **** ******* **** * ** *****  * **** ****  * 

consensus_5469#0      CTCTTTCTCCATTCATATCAGGACTGGTGTCATCAGATGATTCATTGCAAAGATTGTAGC 2279
consensus_5469#1      CTTCT----CATT-ATATCNGACTGTGTATCA----ATGAT-CATTGCAA-GATTG--AC 593
                      **  *    **** ***** *     ** ***    ***** ******** *****   *

consensus_5469#0      ATACTAGTTCTTTTCGTTTTGCCTTTTGCCCTGTCTTTCTGTCCTCTACACTGAGTAGAT 2339
consensus_5469#1      ATTGTAGTCCTTTG---TTTGCTTTTGGC------TTGCTCTGCTCTA-ACTGA-TAACT 642
                      **  **** ****    ***** *** **      ** ** * ***** ***** **  *

consensus_5469#0      CTCTCTAGTTGGTGTGAGTTTGTGTGAGCCAATGTAGTGCAGTAGTGGAGCCTGACCCAA 2399
consensus_5469#1      CT-------TAATGGGGAATTG---GGACCATATCCATATGACTCTCCAATTCAGGTCTA 692
                      **       *  ** *   ***   *  ***      *       *  *        * *

consensus_5469#0      AATCTCAAGGGTTCCTAGAGCTCCTCTAATTTTTTGCCCCATATAATGATACCTCCGAAT 2459
consensus_5469#1      ACTCTTATTTTGCCTTAGACCTCATATTATTCAATGACTT-CACAGTGATGGATAGTGTC 751
                      * *** *      * **** *** * * ***   ** *    * * ****   *      

consensus_5469#0      GATTTCAATTAAGCAAGTTGAATCTGTA--CAGCACAGGCTTGCTGTGTTCAGTTCATGT 2517
consensus_5469#1      AACCCCTGTTAAG-ATGATATTTTTGCAGGCGGCATATTTTAGAATTGGTGAATTTA-AT 809
                       *   *  ***** * * *   * ** *  * *** *   * *   ** * * ** *  *

consensus_5469#0      CTACTCCAGCTCCAGCTGTCATATATCAGCTAACTACTGACTACTAGTAATATGCCCGTG 2577
consensus_5469#1      CGTGTATAAAGGCGAC-------------------------------------------- 825
                      *   *  *    *  *                                            

consensus_5469#0      CTAAACGCTACGGTGCAACTCTATTTGTCTNTAATAATTTTTAAAATTTTCATGTTTAGC 2637
consensus_5469#1      ------------------------------------------------------------
                                                                                  

consensus_5469#0      AAAAAAAA 2645
consensus_5469#1      --------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)