These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5470#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1006 fasta sequence [CACAATTTAGCTTAGCTTAAGCCACTTGATCTCAAGCTCAAGCTTAAAATTAGCTTAAGATTAAGCCATTAATTAGCCAAGCTAACTAAGCAAGCAAGATCTTGTTGAGGAGATGATGGCAAGCGACGGCAGCGCGAGCCCGGCCAGCTGCGGCGGCGCGGCGTGCGGGGTGTGCGGCGGCGCGGCGACGGTGTACTGCGCGGCGGACGCGGCGGCGCTCTGCGTGCCGTGCGACGCCGCGGTGCACGCGGCCAACCCGCTGGCGTCGCGCCACGACCGCGTGCCGCTCGCGGTCGCCATGGCGGCGGCGAGCTCCGGGGTGTACGACCACCTGTTCGCGCCCGACGACGACGCCGCCTCGTCATGGGCTGCCGCCGCGGCGGCGGGGGCGGCGGTGCAGGGGCAGGGGCAGGGGAGCCCCAACGACAGCTCGTCGAGCTTCACCAACGACAGCGCCGCCGCCTCCTCGTCATC-GGACGACGACAGCACGGCCGCCGCCGGAGTCAGCGGCGCCGGCGGCGCCGGCGCCGCCGCCACGAAGGAGGCCAAGTTCTGGCTCTCCTTCTCCGACGACGGCCGCGCCGACGGCGTAGGGTTCTACATGGACAGCACCACCGCTGCCACCGCGGCCTACGGCGTCGTGCCAACCTTCTAGAAAGTTCCAGAAACCCCTCTCCCAATGGGCGCCAACGCGGCAACGGCAATGGCGTTGGCCCGTCTTAAGACAAACATTAAGAAAAGGGCAACATGTCATAATCTCGCCGTCATGCTAATGGTGGCGCATGGTGTTCATGTCGTCGTCTTCTTCGCCGTCGCTTTCTGATTCCGTGGTGGAAACCCGCATCACTATTTTTAACTGCTGATGCGGGTTTTCGGTGGGTGGAATTCCAAATTCCATCGGTTAAAATTAGGGGGATTATTATTAATGCATTGTGACTTTTGTAAGATAACTCATGTAGTTAATTTCTATGGTTCAGTGCTGAAATAATAAAAAAAATCCAATGTG] [+] EMBL AK109938 [CACAATTTAGCTTAGCTTAAGCCACTTGATCTCAAGCTCAAGCTTAAAATTAGCTTAAGATTAAGCCATTAATTAGCCAAGCTAACTAAGCAAGCAAGATCTTGTTGAGGAGATGATGGCAAGCGACGGCAGCGCGAGCCCGGCCAGCTGCGGCGGCGCGGCGTGCGGGGTGTGCGGCGGCGCGGCGACGGTGTACTGCGCGGCGGACGCGGCGGCGCTCTGCGTGCCGTGCGACGCCGCGGTGCACGCGGCCAACCCGCTGGCGTCGCGCCACGACCGCGTGCCGCTCGCGGTCGCCATGGCGGCGGCGAGCTCCGGGGTGTACGACCACCTGTTCGCGCCCGACGACGACGCCGCCTCGTCATGGGCTGCCGCCGCGGCGGCGGGGGCGGCGGTGCAGGGGCAGGGGCAGGGGAGCCCCAACGACAGCTCGTCGAGCTTCACCAACGACAGCGCCGCCGCCTCCTCGTCATC GGACGACGACAGCACGGCCGCCGCCGGAGTCAGCGGCGCCGGCGGCGCCGGCGCCGCCGCCACGAAGGAGGCCAAGTTCTGGCTCTCCTTCTCCGACGACGGCCGCGCCGACGGCGTAGGGTTCTACATGGACAGCACCACCGCTGCCACCGCGGCCTACGGCGTCGTGCCAACCTTCTAGAAAGTTCCAGAAACCCCTCTCCCAATGGGCGCCAACGCGGCAACGGCAATGGCGTTGGCCCGTCTTAAGACAAACATTAAGAAAAGGGCAACATGTCATAATCTCGCCGTCATGCTAATGGTGGCGCATGGTGTTCATGTCGTCGTCTTCTTCGCCGTCGCTTTCTGATTCCGTGGTGGAAACCCGCATCACTATTTTTAACTGCTGATGCGGGTTTTCGGTGGGTGGAATTCCAAATTCCATCGGTTAAAATTAGGGGGATTATTATTAATGCATTGTGACTTTTGTAAGATAACTCATGTAGTTAATTTCTATGGTTCAGTGCTGAAATAATAAAAAAAATCCAATGTG] [+] EMBL BI802782 [ cccCTCGTC AGC GCGCC AC CA C CCCCCGCCTCCTCGTCATCGGGACGACGACAGCAC GCCGCCGCCGGAGTCAGCGGCGCC GCGGCGCCGGCACCGCCGCCACGAAGGAGGCCAAGTTCTGGCTCTCCTTCTCCGACGAC GCCGCGCCGACGGCGTAGGGTTCTACATGGACAGCACCACCGCTGCCACCGCGGCCTACGGCGTCGTGCCAACCTTCTAGAAAGTTCCAGAAACCCCTCTCCCAATGGGCGCCAACGCGGCAACGGCAATGGCGTTTGCCCGTCTTAA AC AACATTAAGAAAAGGGC ACATGTCATAATCTCGCCGTCATGCTAATGGTGGCGCATGGTGTTCATGTCGTCGTCTTCTTCGCCGTCGCTTTCTGATTCCGTGGTGGAAACCCGCATCACTATTTTTAACTGCTGATGCGGGTTTTCGGTGGGTGGAATTCC AATTCCATCGGTTAAAATTAGGGGGATTATTATTAATGCATTGTGACTTTTGTAAGATAACTCATGTAGTTAATTTCTATGGTTCAGTGCTGAAATAATAAAAAAAAT ] consensusID : consensus_5470#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 979 fasta sequence [TAGCTTAAGCCACTTGATCTCAAGCTCAAGCTTANAATTAGCTTAAGATTAAGCCATTAATTAGCCAAGCTAACTAAGCAAGCAAGATCTTGTTGAGGAGATGATGGCAAGCGACGGCAGCGCGAGCCCGGCCAGCTGCGGCGGCGCGGCGTGCGGNGTGTGCGGCGGCGCGGCGACGGTGTACTGCGCGGCGGACGCGGCGGCGCTCTGCGTGCCGTGCGACGCCGCGGTGCACGCGGCCAACCCGCTGGCGTCGCGCCACGACCGCGTGCCGTTCGCGGTCGCCATGGGGGNGGCGAGCTCCGGGGTGTNCGACCACCTGGTCGCGCCCGACACAACGCCGCTCTGTATAGGCTGGCGCTGTGGGGCTGCGGCGGCGTTTACGGGCATGTGCTGTTACACCTACCACTGTTGTTGGTCTTCACAAAAGAATGCCGGCGGGGTGGGGAGCTGGCCTCGAGTCGTCGATATATGTNTTTTCAGTAATTNTGTCTTGGGTCGTTAGTTTTATTCTGTAATGTACGTGTTCGGGTTATTATTCTCCTGTCAATATGNTCTGGGATAGTTCACATCATTGTAATATTGTTGATTAATCTGGTTCTGTGAGGCGTTTGTATTGTTTGCTGAATTTTTGTTTTTGTATCGTATAGCTATGTTTCTAATTACTTAATGGCACTATGGTGGTATGGAGTCTCTATGCATGTTAGGATTTGNTGATCTTATTGTNTGTGGATACTTTAGGATTNCTATTTCGGTTCTTCTGCTTATATTTTCTTGTCGGATGGCGCACTGGGTAGGAGACTGAGTGGCTNTNNNNNNNNNNNTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNGNNNNNCGGGNNNNNNNNNNNNNNNNCCGGNNNNNNNNNNNNTNNNNNNNNNGTGGGGGGGTGTGGGCGGGGACGCGGCGTGAGAAGGNGGTGTGNNNNNTNNNTNNNNNTNNNTNANT] [+] EMBL AW155082 [TAGCTTAAGCCACTTGATCTCAAGCTCAAGCTTANAATTAGCTTAAGATTAAGCCATTAATTAGCCAAGCTAACTAAGCAAGCAAGATCTTGTTGAGGAGATGATGGCAAGCGACGGCAGCGCGAGCCCGGCCAGCTGCGGCGGCGCGGCGTGCGGNGTGTGCGGCGGCGCGGCGACGGTGTACTGCGCGGCGGACGCGGCGGCGCTCTGCGTGCCGTGCGACGCCGCGGTGCACGCGGCCAACCCGCTGGCGTCGCGCCACGACCGCGTGCCGTTCGCGGTCGCCATGGGGGNGGCGAGCTCCGGGGTGTNCGACCACCTGGTCGCGCCCGACACAACGCCGCTCTGTATAGGCTGGCGCTGTGGGGCTGCGGCGGCGTTTACGGGCATGTGCTGTTACACCTACCACTGTTGTTGGTCTTCACAAAAGAATGCCGGCGGGGTGGGGAGCTGGCCTCGAGTCGTCGATATATGTNTTTTCAGTAATTNTGTCTTGGGTCGTTAGTTTTATTCTGTAATGTACGTGTTCGGGTTATTATTCTCCTGTCAATATGNTCTGGGATAGTTCACATCATTGTAATATTGTTGATTAATCTGGTTCTGTGAGGCGTTTGTATTGTTTGCTGAATTTTTGTTTTTGTATCGTATAGCTATGTTTCTAATTACTTAATGGCACTATGGTGGTATGGAGTCTCTATGCATGTTAGGATTTGNTGATCTTATTGTNTGTGGATACTTTAGGATTNCTATTTCGGTTCTTCTGCTTATATTTTCTTGTCGGATGGCGCACTGGGTAGGAGACTGAGTGGCTNTNNNNNNNNNNNTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNGNNNNNCGGGNNNNNNNNNNNNNNNNCCGGNNNNNNNNNNNNTNNNNNNNNNGTGGGGGGGTGTGGGCGGGGACGCGGCGTGAGAAGGNGGTGTGNNNNNTNNNTNNNNNTNNNTNANT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5470#0 CACAATTTAGCTTAGCTTAAGCCACTTGATCTCAAGCTCAAGCTTAAAATTAGCTTAAGA 60 consensus_5470#1 ------------TAGCTTAAGCCACTTGATCTCAAGCTCAAGCTTANAATTAGCTTAAGA 48 ********************************** ************* consensus_5470#0 TTAAGCCATTAATTAGCCAAGCTAACTAAGCAAGCAAGATCTTGTTGAGGAGATGATGGC 120 consensus_5470#1 TTAAGCCATTAATTAGCCAAGCTAACTAAGCAAGCAAGATCTTGTTGAGGAGATGATGGC 108 ************************************************************ consensus_5470#0 AAGCGACGGCAGCGCGAGCCCGGCCAGCTGCGGCGGCGCGGCGTGCGGGGTGTGCGGCGG 180 consensus_5470#1 AAGCGACGGCAGCGCGAGCCCGGCCAGCTGCGGCGGCGCGGCGTGCGGNGTGTGCGGCGG 168 ************************************************ *********** consensus_5470#0 CGCGGCGACGGTGTACTGCGCGGCGGACGCGGCGGCGCTCTGCGTGCCGTGCGACGCCGC 240 consensus_5470#1 CGCGGCGACGGTGTACTGCGCGGCGGACGCGGCGGCGCTCTGCGTGCCGTGCGACGCCGC 228 ************************************************************ consensus_5470#0 GGTGCACGCGGCCAACCCGCTGGCGTCGCGCCACGACCGCGTGCCGCTCGCGGTCGCCAT 300 consensus_5470#1 GGTGCACGCGGCCAACCCGCTGGCGTCGCGCCACGACCGCGTGCCGTTCGCGGTCGCCAT 288 ********************************************** ************* consensus_5470#0 GGCGGCGGCGAGCTCCGGGGTGTACGACCACCTGTTCGCGCCCGACGACGACGCCGCCTC 360 consensus_5470#1 GGGGGNGGCGAGCTCCGGGGTGTNCGACCACCTGGTCGCGCCCGAC-ACAACGCCGCTCT 347 ** ** ***************** ********** *********** ** ******* consensus_5470#0 GTCATGGGCTGCCGCCGCGGCGGCGGGGGCGGCGGTGCAGGGGCAGGGGCAGGGGAGCCC 420 consensus_5470#1 GT-ATAGGCTGGCGCTGTGG-GGCTGCGGCGGCGTT-TACGGGCATGTGCTGTT--ACAC 402 ** ** ***** *** * ** *** * ******* * * ***** * ** * * * consensus_5470#0 CAACGACAGCTCGTCGAGCTTCACCAACGA----CAGCGCCGCCGCCTCCTCGTCATCGG 476 consensus_5470#1 CTACCACTG-TTGTTGGTCTTCACAAAAGAATGCCGGCGGGGTGGGGAGCTGGCCTCGAG 461 * ** ** * * ** * ****** ** ** * *** * * ** * * * consensus_5470#0 ACGACGACAGCACGGCCGCCGCCGGAGTCAGCGGCGCCGGCGGCGCCGGCGCCGCCGCCA 536 consensus_5470#1 TCGTCGATA-TATG--TNTTTTCAGTAATTNTGTCTTGGGTCGTTAGTTTTATTCTGTAA 518 ** *** * * * * * * * ** * * * * consensus_5470#0 CGAAGGAGGCCAAGTTCTGGCTCTCCTTCTCCGACGAC--GGCCGCGCCGACGGCGTAGG 594 consensus_5470#1 TGTACGTGTTCGGGTTATTATTCTCCTGTCAATATGNTCTGGGATAGTTCACATCATTGT 578 * * * * * *** * ****** * * ** * ** * * * consensus_5470#0 GTTCTACATGGACAGCACCACCGCTGCCACCGCGGCCTACGGCGTCGTGCCAACCTTCTA 654 consensus_5470#1 AATAT-TGTTGATTAATCTGGTTCTGTGA--GGCGTTTGTATTGTT-TGCTGAATTTTT- 633 * * * ** * *** * * * * ** *** * ** * consensus_5470#0 GAAAGTTCCAGAAACCCCTCTCCCAATGGGCGCCAACGCGGCAACGGCAATGGCGTTGGC 714 consensus_5470#1 ----GTTTTTGTA--TCGTATAGCTATGTTT-CTAATTACTTAATGGCACTATGGTGGTA 686 *** * * * * * * *** * ** ** **** * ** * consensus_5470#0 CCGTCTTAAGACAAACATTAAGAAAAGGGCAACATGTCATAATCTCGCCGTCATGCTAAT 774 consensus_5470#1 TGGAGTCTCTATGCATGTTAGGATTTGNTGATCTTATTGTN-TGTGGATACTTTAGGATT 745 * * * * *** ** * * * * * * * * * * * * consensus_5470#0 GGTGGCGCATGGTGTTCATGTCGTCGTCTTCTTCGCCG-TCGCTTTCTGATTCCGTGGTG 833 consensus_5470#1 NCTATTTC--GGTTCTTCTGCTTATATTTTCTTGTCGGATGGCGCACTGGGTAGGAGACT 803 * * *** * ** * ***** * * * ** *** * * * consensus_5470#0 GAA-ACCCGCATCACTATTTTTAACTGCTGATGCGGGTTTTCGGTGGGTGGAATTCCAAA 892 consensus_5470#1 GAGTGGCTNTNNNNNNNNNNNTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNGNN 863 ** * * * consensus_5470#0 TTCCATCGGTTAAAATTAGGGGGATTATTATTAATGCATTGTGACTTTTGTAAGATAACT 952 consensus_5470#1 NNNCGGGNNNNNNNNNNNNNNNNCCGGNNNNNNNNNNNNTNNNNNNNNNGTGGGGGGGTG 923 * * ** * consensus_5470#0 CATGTAGTTAATTTCTATGGTTCAGTGCTG-AAATAATAAAAAAAATCCAATGTG- 1006 consensus_5470#1 TGGGCGGGGACGCGGCGTGAGAAGGNGGTGTGNNNNNTNNNTNNNNNTNNNTNANT 979 * * * ** * * ** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||