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Oryza sativa
cluster # 5470 cluster # 5470       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5470#0 length = 1006 sequences # 2  
consensus_5470#1 length = 979 sequences # 1  

consensusID : consensus_5470#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1006
fasta sequence
                              [CACAATTTAGCTTAGCTTAAGCCACTTGATCTCAAGCTCAAGCTTAAAATTAGCTTAAGATTAAGCCATTAATTAGCCAAGCTAACTAAGCAAGCAAGATCTTGTTGAGGAGATGATGGCAAGCGACGGCAGCGCGAGCCCGGCCAGCTGCGGCGGCGCGGCGTGCGGGGTGTGCGGCGGCGCGGCGACGGTGTACTGCGCGGCGGACGCGGCGGCGCTCTGCGTGCCGTGCGACGCCGCGGTGCACGCGGCCAACCCGCTGGCGTCGCGCCACGACCGCGTGCCGCTCGCGGTCGCCATGGCGGCGGCGAGCTCCGGGGTGTACGACCACCTGTTCGCGCCCGACGACGACGCCGCCTCGTCATGGGCTGCCGCCGCGGCGGCGGGGGCGGCGGTGCAGGGGCAGGGGCAGGGGAGCCCCAACGACAGCTCGTCGAGCTTCACCAACGACAGCGCCGCCGCCTCCTCGTCATC-GGACGACGACAGCACGGCCGCCGCCGGAGTCAGCGGCGCCGGCGGCGCCGGCGCCGCCGCCACGAAGGAGGCCAAGTTCTGGCTCTCCTTCTCCGACGACGGCCGCGCCGACGGCGTAGGGTTCTACATGGACAGCACCACCGCTGCCACCGCGGCCTACGGCGTCGTGCCAACCTTCTAGAAAGTTCCAGAAACCCCTCTCCCAATGGGCGCCAACGCGGCAACGGCAATGGCGTTGGCCCGTCTTAAGACAAACATTAAGAAAAGGGCAACATGTCATAATCTCGCCGTCATGCTAATGGTGGCGCATGGTGTTCATGTCGTCGTCTTCTTCGCCGTCGCTTTCTGATTCCGTGGTGGAAACCCGCATCACTATTTTTAACTGCTGATGCGGGTTTTCGGTGGGTGGAATTCCAAATTCCATCGGTTAAAATTAGGGGGATTATTATTAATGCATTGTGACTTTTGTAAGATAACTCATGTAGTTAATTTCTATGGTTCAGTGCTGAAATAATAAAAAAAATCCAATGTG]

[+] EMBL AK109938             [CACAATTTAGCTTAGCTTAAGCCACTTGATCTCAAGCTCAAGCTTAAAATTAGCTTAAGATTAAGCCATTAATTAGCCAAGCTAACTAAGCAAGCAAGATCTTGTTGAGGAGATGATGGCAAGCGACGGCAGCGCGAGCCCGGCCAGCTGCGGCGGCGCGGCGTGCGGGGTGTGCGGCGGCGCGGCGACGGTGTACTGCGCGGCGGACGCGGCGGCGCTCTGCGTGCCGTGCGACGCCGCGGTGCACGCGGCCAACCCGCTGGCGTCGCGCCACGACCGCGTGCCGCTCGCGGTCGCCATGGCGGCGGCGAGCTCCGGGGTGTACGACCACCTGTTCGCGCCCGACGACGACGCCGCCTCGTCATGGGCTGCCGCCGCGGCGGCGGGGGCGGCGGTGCAGGGGCAGGGGCAGGGGAGCCCCAACGACAGCTCGTCGAGCTTCACCAACGACAGCGCCGCCGCCTCCTCGTCATC GGACGACGACAGCACGGCCGCCGCCGGAGTCAGCGGCGCCGGCGGCGCCGGCGCCGCCGCCACGAAGGAGGCCAAGTTCTGGCTCTCCTTCTCCGACGACGGCCGCGCCGACGGCGTAGGGTTCTACATGGACAGCACCACCGCTGCCACCGCGGCCTACGGCGTCGTGCCAACCTTCTAGAAAGTTCCAGAAACCCCTCTCCCAATGGGCGCCAACGCGGCAACGGCAATGGCGTTGGCCCGTCTTAAGACAAACATTAAGAAAAGGGCAACATGTCATAATCTCGCCGTCATGCTAATGGTGGCGCATGGTGTTCATGTCGTCGTCTTCTTCGCCGTCGCTTTCTGATTCCGTGGTGGAAACCCGCATCACTATTTTTAACTGCTGATGCGGGTTTTCGGTGGGTGGAATTCCAAATTCCATCGGTTAAAATTAGGGGGATTATTATTAATGCATTGTGACTTTTGTAAGATAACTCATGTAGTTAATTTCTATGGTTCAGTGCTGAAATAATAAAAAAAATCCAATGTG]
[+] EMBL BI802782             [                                                                                                                                                                                                                                                                                                                                                                                                                                          cccCTCGTC AGC GCGCC AC  CA C CCCCCGCCTCCTCGTCATCGGGACGACGACAGCAC GCCGCCGCCGGAGTCAGCGGCGCC GCGGCGCCGGCACCGCCGCCACGAAGGAGGCCAAGTTCTGGCTCTCCTTCTCCGACGAC GCCGCGCCGACGGCGTAGGGTTCTACATGGACAGCACCACCGCTGCCACCGCGGCCTACGGCGTCGTGCCAACCTTCTAGAAAGTTCCAGAAACCCCTCTCCCAATGGGCGCCAACGCGGCAACGGCAATGGCGTTTGCCCGTCTTAA AC AACATTAAGAAAAGGGC ACATGTCATAATCTCGCCGTCATGCTAATGGTGGCGCATGGTGTTCATGTCGTCGTCTTCTTCGCCGTCGCTTTCTGATTCCGTGGTGGAAACCCGCATCACTATTTTTAACTGCTGATGCGGGTTTTCGGTGGGTGGAATTCC AATTCCATCGGTTAAAATTAGGGGGATTATTATTAATGCATTGTGACTTTTGTAAGATAACTCATGTAGTTAATTTCTATGGTTCAGTGCTGAAATAATAAAAAAAAT        ]


>consensus_5470#0 CACAATTTAGCTTAGCTTAAGCCACTTGATCTCAAGCTCAAGCTTAAAATTAGCTTAAGA TTAAGCCATTAATTAGCCAAGCTAACTAAGCAAGCAAGATCTTGTTGAGGAGATGATGGC AAGCGACGGCAGCGCGAGCCCGGCCAGCTGCGGCGGCGCGGCGTGCGGGGTGTGCGGCGG CGCGGCGACGGTGTACTGCGCGGCGGACGCGGCGGCGCTCTGCGTGCCGTGCGACGCCGC GGTGCACGCGGCCAACCCGCTGGCGTCGCGCCACGACCGCGTGCCGCTCGCGGTCGCCAT GGCGGCGGCGAGCTCCGGGGTGTACGACCACCTGTTCGCGCCCGACGACGACGCCGCCTC GTCATGGGCTGCCGCCGCGGCGGCGGGGGCGGCGGTGCAGGGGCAGGGGCAGGGGAGCCC CAACGACAGCTCGTCGAGCTTCACCAACGACAGCGCCGCCGCCTCCTCGTCATCGGACGA CGACAGCACGGCCGCCGCCGGAGTCAGCGGCGCCGGCGGCGCCGGCGCCGCCGCCACGAA GGAGGCCAAGTTCTGGCTCTCCTTCTCCGACGACGGCCGCGCCGACGGCGTAGGGTTCTA CATGGACAGCACCACCGCTGCCACCGCGGCCTACGGCGTCGTGCCAACCTTCTAGAAAGT TCCAGAAACCCCTCTCCCAATGGGCGCCAACGCGGCAACGGCAATGGCGTTGGCCCGTCT TAAGACAAACATTAAGAAAAGGGCAACATGTCATAATCTCGCCGTCATGCTAATGGTGGC GCATGGTGTTCATGTCGTCGTCTTCTTCGCCGTCGCTTTCTGATTCCGTGGTGGAAACCC GCATCACTATTTTTAACTGCTGATGCGGGTTTTCGGTGGGTGGAATTCCAAATTCCATCG GTTAAAATTAGGGGGATTATTATTAATGCATTGTGACTTTTGTAAGATAACTCATGTAGT TAATTTCTATGGTTCAGTGCTGAAATAATAAAAAAAATCCAATGTG



consensusID : consensus_5470#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 979
fasta sequence
                              [TAGCTTAAGCCACTTGATCTCAAGCTCAAGCTTANAATTAGCTTAAGATTAAGCCATTAATTAGCCAAGCTAACTAAGCAAGCAAGATCTTGTTGAGGAGATGATGGCAAGCGACGGCAGCGCGAGCCCGGCCAGCTGCGGCGGCGCGGCGTGCGGNGTGTGCGGCGGCGCGGCGACGGTGTACTGCGCGGCGGACGCGGCGGCGCTCTGCGTGCCGTGCGACGCCGCGGTGCACGCGGCCAACCCGCTGGCGTCGCGCCACGACCGCGTGCCGTTCGCGGTCGCCATGGGGGNGGCGAGCTCCGGGGTGTNCGACCACCTGGTCGCGCCCGACACAACGCCGCTCTGTATAGGCTGGCGCTGTGGGGCTGCGGCGGCGTTTACGGGCATGTGCTGTTACACCTACCACTGTTGTTGGTCTTCACAAAAGAATGCCGGCGGGGTGGGGAGCTGGCCTCGAGTCGTCGATATATGTNTTTTCAGTAATTNTGTCTTGGGTCGTTAGTTTTATTCTGTAATGTACGTGTTCGGGTTATTATTCTCCTGTCAATATGNTCTGGGATAGTTCACATCATTGTAATATTGTTGATTAATCTGGTTCTGTGAGGCGTTTGTATTGTTTGCTGAATTTTTGTTTTTGTATCGTATAGCTATGTTTCTAATTACTTAATGGCACTATGGTGGTATGGAGTCTCTATGCATGTTAGGATTTGNTGATCTTATTGTNTGTGGATACTTTAGGATTNCTATTTCGGTTCTTCTGCTTATATTTTCTTGTCGGATGGCGCACTGGGTAGGAGACTGAGTGGCTNTNNNNNNNNNNNTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNGNNNNNCGGGNNNNNNNNNNNNNNNNCCGGNNNNNNNNNNNNTNNNNNNNNNGTGGGGGGGTGTGGGCGGGGACGCGGCGTGAGAAGGNGGTGTGNNNNNTNNNTNNNNNTNNNTNANT]

[+] EMBL AW155082             [TAGCTTAAGCCACTTGATCTCAAGCTCAAGCTTANAATTAGCTTAAGATTAAGCCATTAATTAGCCAAGCTAACTAAGCAAGCAAGATCTTGTTGAGGAGATGATGGCAAGCGACGGCAGCGCGAGCCCGGCCAGCTGCGGCGGCGCGGCGTGCGGNGTGTGCGGCGGCGCGGCGACGGTGTACTGCGCGGCGGACGCGGCGGCGCTCTGCGTGCCGTGCGACGCCGCGGTGCACGCGGCCAACCCGCTGGCGTCGCGCCACGACCGCGTGCCGTTCGCGGTCGCCATGGGGGNGGCGAGCTCCGGGGTGTNCGACCACCTGGTCGCGCCCGACACAACGCCGCTCTGTATAGGCTGGCGCTGTGGGGCTGCGGCGGCGTTTACGGGCATGTGCTGTTACACCTACCACTGTTGTTGGTCTTCACAAAAGAATGCCGGCGGGGTGGGGAGCTGGCCTCGAGTCGTCGATATATGTNTTTTCAGTAATTNTGTCTTGGGTCGTTAGTTTTATTCTGTAATGTACGTGTTCGGGTTATTATTCTCCTGTCAATATGNTCTGGGATAGTTCACATCATTGTAATATTGTTGATTAATCTGGTTCTGTGAGGCGTTTGTATTGTTTGCTGAATTTTTGTTTTTGTATCGTATAGCTATGTTTCTAATTACTTAATGGCACTATGGTGGTATGGAGTCTCTATGCATGTTAGGATTTGNTGATCTTATTGTNTGTGGATACTTTAGGATTNCTATTTCGGTTCTTCTGCTTATATTTTCTTGTCGGATGGCGCACTGGGTAGGAGACTGAGTGGCTNTNNNNNNNNNNNTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNGNNNNNCGGGNNNNNNNNNNNNNNNNCCGGNNNNNNNNNNNNTNNNNNNNNNGTGGGGGGGTGTGGGCGGGGACGCGGCGTGAGAAGGNGGTGTGNNNNNTNNNTNNNNNTNNNTNANT]


>consensus_5470#1 TAGCTTAAGCCACTTGATCTCAAGCTCAAGCTTANAATTAGCTTAAGATTAAGCCATTAA TTAGCCAAGCTAACTAAGCAAGCAAGATCTTGTTGAGGAGATGATGGCAAGCGACGGCAG CGCGAGCCCGGCCAGCTGCGGCGGCGCGGCGTGCGGNGTGTGCGGCGGCGCGGCGACGGT GTACTGCGCGGCGGACGCGGCGGCGCTCTGCGTGCCGTGCGACGCCGCGGTGCACGCGGC CAACCCGCTGGCGTCGCGCCACGACCGCGTGCCGTTCGCGGTCGCCATGGGGGNGGCGAG CTCCGGGGTGTNCGACCACCTGGTCGCGCCCGACACAACGCCGCTCTGTATAGGCTGGCG CTGTGGGGCTGCGGCGGCGTTTACGGGCATGTGCTGTTACACCTACCACTGTTGTTGGTC TTCACAAAAGAATGCCGGCGGGGTGGGGAGCTGGCCTCGAGTCGTCGATATATGTNTTTT CAGTAATTNTGTCTTGGGTCGTTAGTTTTATTCTGTAATGTACGTGTTCGGGTTATTATT CTCCTGTCAATATGNTCTGGGATAGTTCACATCATTGTAATATTGTTGATTAATCTGGTT CTGTGAGGCGTTTGTATTGTTTGCTGAATTTTTGTTTTTGTATCGTATAGCTATGTTTCT AATTACTTAATGGCACTATGGTGGTATGGAGTCTCTATGCATGTTAGGATTTGNTGATCT TATTGTNTGTGGATACTTTAGGATTNCTATTTCGGTTCTTCTGCTTATATTTTCTTGTCG GATGGCGCACTGGGTAGGAGACTGAGTGGCTNTNNNNNNNNNNNTTNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNTNNNGNNNNNCGGGNNNNNNNNNNNNNNNNCCGGNNNNNNNNNN NNTNNNNNNNNNGTGGGGGGGTGTGGGCGGGGACGCGGCGTGAGAAGGNGGTGTGNNNNN TNNNTNNNNNTNNNTNANT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5470#0      CACAATTTAGCTTAGCTTAAGCCACTTGATCTCAAGCTCAAGCTTAAAATTAGCTTAAGA 60
consensus_5470#1      ------------TAGCTTAAGCCACTTGATCTCAAGCTCAAGCTTANAATTAGCTTAAGA 48
                                  ********************************** *************

consensus_5470#0      TTAAGCCATTAATTAGCCAAGCTAACTAAGCAAGCAAGATCTTGTTGAGGAGATGATGGC 120
consensus_5470#1      TTAAGCCATTAATTAGCCAAGCTAACTAAGCAAGCAAGATCTTGTTGAGGAGATGATGGC 108
                      ************************************************************

consensus_5470#0      AAGCGACGGCAGCGCGAGCCCGGCCAGCTGCGGCGGCGCGGCGTGCGGGGTGTGCGGCGG 180
consensus_5470#1      AAGCGACGGCAGCGCGAGCCCGGCCAGCTGCGGCGGCGCGGCGTGCGGNGTGTGCGGCGG 168
                      ************************************************ ***********

consensus_5470#0      CGCGGCGACGGTGTACTGCGCGGCGGACGCGGCGGCGCTCTGCGTGCCGTGCGACGCCGC 240
consensus_5470#1      CGCGGCGACGGTGTACTGCGCGGCGGACGCGGCGGCGCTCTGCGTGCCGTGCGACGCCGC 228
                      ************************************************************

consensus_5470#0      GGTGCACGCGGCCAACCCGCTGGCGTCGCGCCACGACCGCGTGCCGCTCGCGGTCGCCAT 300
consensus_5470#1      GGTGCACGCGGCCAACCCGCTGGCGTCGCGCCACGACCGCGTGCCGTTCGCGGTCGCCAT 288
                      ********************************************** *************

consensus_5470#0      GGCGGCGGCGAGCTCCGGGGTGTACGACCACCTGTTCGCGCCCGACGACGACGCCGCCTC 360
consensus_5470#1      GGGGGNGGCGAGCTCCGGGGTGTNCGACCACCTGGTCGCGCCCGAC-ACAACGCCGCTCT 347
                      ** ** ***************** ********** *********** ** *******   

consensus_5470#0      GTCATGGGCTGCCGCCGCGGCGGCGGGGGCGGCGGTGCAGGGGCAGGGGCAGGGGAGCCC 420
consensus_5470#1      GT-ATAGGCTGGCGCTGTGG-GGCTGCGGCGGCGTT-TACGGGCATGTGCTGTT--ACAC 402
                      ** ** ***** *** * ** *** * ******* *  * ***** * ** *     * *

consensus_5470#0      CAACGACAGCTCGTCGAGCTTCACCAACGA----CAGCGCCGCCGCCTCCTCGTCATCGG 476
consensus_5470#1      CTACCACTG-TTGTTGGTCTTCACAAAAGAATGCCGGCGGGGTGGGGAGCTGGCCTCGAG 461
                      * ** ** * * ** *  ****** ** **    * ***  *  *    ** * *    *

consensus_5470#0      ACGACGACAGCACGGCCGCCGCCGGAGTCAGCGGCGCCGGCGGCGCCGGCGCCGCCGCCA 536
consensus_5470#1      TCGTCGATA-TATG--TNTTTTCAGTAATTNTGTCTTGGGTCGTTAGTTTTATTCTGTAA 518
                       ** *** *  * *        * *       * *   **  *           * *  *

consensus_5470#0      CGAAGGAGGCCAAGTTCTGGCTCTCCTTCTCCGACGAC--GGCCGCGCCGACGGCGTAGG 594
consensus_5470#1      TGTACGTGTTCGGGTTATTATTCTCCTGTCAATATGNTCTGGGATAGTTCACATCATTGT 578
                       * * * *  *  *** *   ******      * *    **    *   **  * * * 

consensus_5470#0      GTTCTACATGGACAGCACCACCGCTGCCACCGCGGCCTACGGCGTCGTGCCAACCTTCTA 654
consensus_5470#1      AATAT-TGTTGATTAATCTGGTTCTGTGA--GGCGTTTGTATTGTT-TGCTGAATTTTT- 633
                        * *   * **     *     ***  *  *  *  *     **  ***  *  ** * 

consensus_5470#0      GAAAGTTCCAGAAACCCCTCTCCCAATGGGCGCCAACGCGGCAACGGCAATGGCGTTGGC 714
consensus_5470#1      ----GTTTTTGTA--TCGTATAGCTATGTTT-CTAATTACTTAATGGCACTATGGTGGTA 686
                          ***   * *   * * *  * ***    * **      ** **** *   ** *  

consensus_5470#0      CCGTCTTAAGACAAACATTAAGAAAAGGGCAACATGTCATAATCTCGCCGTCATGCTAAT 774
consensus_5470#1      TGGAGTCTCTATGCATGTTAGGATTTGNTGATCTTATTGTN-TGTGGATACTTTAGGATT 745
                        *  *    *   *  *** **   *   * * * *  *  * * *      *   * *

consensus_5470#0      GGTGGCGCATGGTGTTCATGTCGTCGTCTTCTTCGCCG-TCGCTTTCTGATTCCGTGGTG 833
consensus_5470#1      NCTATTTC--GGTTCTTCTGCTTATATTTTCTTGTCGGATGGCGCACTGGGTAGGAGACT 803
                        *    *  ***  *  **      * *****  * * * **   ***  *  * *   

consensus_5470#0      GAA-ACCCGCATCACTATTTTTAACTGCTGATGCGGGTTTTCGGTGGGTGGAATTCCAAA 892
consensus_5470#1      GAGTGGCTNTNNNNNNNNNNNTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNGNN 863
                      **    *              *                               *      

consensus_5470#0      TTCCATCGGTTAAAATTAGGGGGATTATTATTAATGCATTGTGACTTTTGTAAGATAACT 952
consensus_5470#1      NNNCGGGNNNNNNNNNNNNNNNNCCGGNNNNNNNNNNNNTNNNNNNNNNGTGGGGGGGTG 923
                         *                                   *         **  *      

consensus_5470#0      CATGTAGTTAATTTCTATGGTTCAGTGCTG-AAATAATAAAAAAAATCCAATGTG- 1006
consensus_5470#1      TGGGCGGGGACGCGGCGTGAGAAGGNGGTGTGNNNNNTNNNTNNNNNTNNNTNANT 979
                         *  *  *       **     * * **       *             *    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)