These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5473#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence [TAACTTTGTTTATTTCTTAATACATATAGGTGTGCTCTGATAATTCCACTAAAATTAATTTACACATTTTAGGCTTTTAGGAAATATACAAAAATCCTCCAAGCCTTATTTGACTTTTAACTTTGCACATTTTAATTTTTGGAGGCTTTCACATGGATTTTAATTATTCTAGGCATAATTTAGAGGATGTATTTTAGAGTCGTTTTGGGACGTGACAGGTATGCAGTGTGCCGATGCCAGTTATCGAAGCTAACACATCAGTTATGCATTTGGGGATTCGGGTCTAGTGAATAGGACATGGCTAAGCGCCCACCCGAGATTGGACTCGAGGGTGGGTAAGACCCGGAGCGAGGTTGTCCACGAGCGAAGGTCCCTCGAAGAGGCGAGCTTGGAAACCAATCATTTTTTTAGTACCAAAATGTATAGTGTTTTTACGTGAGAGGGATTCTACCTTTGGGGAAGGTAGGATTCCTCGGAGCAAAGGAAATATAATGTTGAATGTTTTCGGGGAAGTGAGAGAAGTACTTCCTTGGGAAGGGAGTACTTCTTGGAGTAAAGGAAAACACTGCAGTTACGGTTGTAAAGAGGTTAGTCCCGTTGTTACGGAGAGTTAGCGATGTTTACACTGGTGTCACGTGTACG] [+] EMBL CB635908 [TAACTTTGTTTATTTCTTAATACATATAGGTGTGCTCTGATAATTCCACTAAAATTAATTTACACATTTTAGGCTTTTAGGAAATATACAAAAATCCTCCAAGCCTTATTTGACTTTTAACTTTGCACATTTTAATTTTTGGAGGCTTTCACATGGATTTTAATTATTCTAGGCATAATTTAGAGGATGTATTTTAGAGTCGTTTTGGGACGTGACAGGTATGCAGTGTGCCGATGCCAGTTATCGAAGCTAACACATCAGTTATGCATTTGGGGATTCGGGTCTAGTGAATAGGACATGGCTAAGCGCCCACCCGAGATTGGACTCGAGGGTGGGTAAGACCCGGAGCGAGGTTGTCCACGAGCGAAGGTCCCTCGAAGAGGCGAGCTTGGAAACCAATCATTTTTTTAGTACCAAAATGTATAGTGTTTTTACGTGAGAGGGATTCTACCTTTGGGGAAGGTAGGATTCCTCGGAGCAAAGGAAATATAATGTTGAATGTTTTCGGGGAAGTGAGAGAAGTACTTCCTTGGGAAGGGAGTACTTCTTGGAGTAAAGGAAAACACTGCAGTTACGGTTGTAAAGAGGTTAGTCCCGTTGTTACGGAGAGTTAGCGATGTTTACACTGGTGTCACGTGTACG] consensusID : consensus_5473#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 592 fasta sequence [AAAAAAGGACTTTTTAGAGCTTTTCTTTTTATAAAACCATTTTAACTTCGTTTATTTCTAATAATTATTATTTGTGCTCTGAAAATTCCACTAAAATTTATTTATGCATTTTAGGCTTTTAGGAAATATACAAAAATCCTCCAAGCCTTATTTGACTTTTTACTTTGCACATTTTAATTGTTGGAGGCTTTCACATGGATTTTAATTATTCTAGGCATAATTTCGAGGATGTATTTTAGAGTCGTTTTGAGACGCGACACTAGTGAACTGGGTGCCGTTATCCTATTTGTCGTCCAGAAGACCACCGATTCGTGTGGTCTTGGACGGGCCGTCGCTCAGGGCAACCTCCTTGACCGGGACCTCGTCGCACGTGACCATCCGCTGCCTTGGGGCGGCCGGGACGGAGGTACTGAGCCTCTCGTCGCCACCCGCGGGCTTGGACGCCGCGGCGAGGTGGTCCGCGCGCTGCTCCATACAAGCAAGCGCGAATTTGAGGTCGCCATGGACGGTGATGGGGCCACCGGGGCCCGGCATCTTCATCTGGTGATAGGCGTAGTGGACCGCCGCCATGAACTTCACCAACACGGGCCTC] [+] EMBL CK085142 [AAAAAAGGACTTTTTAGAGCTTTTCTTTTTATAAAACCATTTTAACTTCGTTTATTTCTAATAATTATTATTTGTGCTCTGAAAATTCCACTAAAATTTATTTATGCATTTTAGGCTTTTAGGAAATATACAAAAATCCTCCAAGCCTTATTTGACTTTTTACTTTGCACATTTTAATTGTTGGAGGCTTTCACATGGATTTTAATTATTCTAGGCATAATTTCGAGGATGTATTTTAGAGTCGTTTTGAGACGCGACACTAGTGAACTGGGTGCCGTTATCCTATTTGTCGTCCAGAAGACCACCGATTCGTGTGGTCTTGGACGGGCCGTCGCTCAGGGCAACCTCCTTGACCGGGACCTCGTCGCACGTGACCATCCGCTGCCTTGGGGCGGCCGGGACGGAGGTACTGAGCCTCTCGTCGCCACCCGCGGGCTTGGACGCCGCGGCGAGGTGGTCCGCGCGCTGCTCCATACAAGCAAGCGCGAATTTGAGGTCGCCATGGACGGTGATGGGGCCACCGGGGCCCGGCATCTTCA ] [+] EMBL CK085143 [ TTTTCTTTTTATAAAACCATTTTAACTTCGTTTATTTCTAATAATTATTATTTGTGCTCTGAAAATTCCACTAAAATTTATTTATGCATTTTAGGCTTTTAGGAAATATACAAAAATCCTCCAAGCCTTATTTGACTTTTTACTTTGCACATTTTAATTGTTGGAGGCTTTCACATGGATTTTAATTATTCTAGGCATAATTTCGAGGATGTATTTTAGAGTCGTTTTGAGACGCGACACTAGTGAACTGGGTGCCGTTATCCTATTTGTCGTCCAGAAGACCACCGATTCGTGTGGTCTTGGACGGGCCGTCGCTCAGGGCAACCTCCTTGACCGGGACCTCGTCGCACGTGACCATCCGCTGCCTTGGGGCGGCCGGGACGGAGGTACTGAGCCTCTCGTCGCCACCCGCGGGCTTGGACGCCGCGGCGAGGTGGTCCGCGCGCTGCTCCATACAAGCAAGCGCGACTTTGAGGTCGCCATGGACGGTGATGGGGCCACCGGGGCCCGGCATCTTCATCTGGTGATAGGCGTAGTGGACCGCCGCCATGAACTTCACCAACACGGGCCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5473#0 ------------------------------------------TAACTTTGTTTATTTCTT 18 consensus_5473#1 AAAAAAGGACTTTTTAGAGCTTTTCTTTTTATAAAACCATTTTAACTTCGTTTATTTCTA 60 ****** ********** consensus_5473#0 AATACATATAGGTGTGCTCTGATAATTCCACTAAAATTAATTTACACATTTTAGGCTTTT 78 consensus_5473#1 ATAATTATTATTTGTGCTCTGAAAATTCCACTAAAATTTATTTATGCATTTTAGGCTTTT 120 * * ** ********** *************** ***** ************** consensus_5473#0 AGGAAATATACAAAAATCCTCCAAGCCTTATTTGACTTTTAACTTTGCACATTTTAATTT 138 consensus_5473#1 AGGAAATATACAAAAATCCTCCAAGCCTTATTTGACTTTTTACTTTGCACATTTTAATTG 180 **************************************** ****************** consensus_5473#0 TTGGAGGCTTTCACATGGATTTTAATTATTCTAGGCATAATTTAGAGGATGTATTTTAGA 198 consensus_5473#1 TTGGAGGCTTTCACATGGATTTTAATTATTCTAGGCATAATTTCGAGGATGTATTTTAGA 240 ******************************************* **************** consensus_5473#0 GTCGTTTTGGGACGTGACAGGTATGCAGTGTGCCGATGCCAGTTATCGAAGCTAACACAT 258 consensus_5473#1 GTCGTTTTGAGACGCGACACTAGTGAACTG----GGTGCC-GTTATCCTATTTGTCGT-C 294 ********* **** **** ** * ** * **** ****** * * * consensus_5473#0 CAGTTATGCATTTGGGGATTCGGGTCTAGTGAATAGGACATGGCTAAGCGCCCACCCGAG 318 consensus_5473#1 CAGAAGACCACC----GATTCGTGT----------GGTCTTGGACGGGCCGTCGCTC-AG 339 *** ** ****** ** ** * *** ** * * * ** consensus_5473#0 ATTGGACTCGAGGGTGGGTAAGACCCGGAGCGAGGTTGTCCACGAGCGAAGGTCCCTCGA 378 consensus_5473#1 GGCAACCTCCTTGACCGGGACCTCGTCGCACGTGACCATCCGC---------TGCCTTGG 390 *** * ** * * * ** * *** * * *** * consensus_5473#0 AGAGGCGAGCTTGGAA--ACCAATCATTTTTTTAGTACCAAAATGTATAGTGTTTTTACG 436 consensus_5473#1 GGCGGCCGGGACGGAGGTACTGAGCCTCTCGTCGCCACCCGCGGGCTTGG--ACGCCGCG 448 * *** * *** ** * * * * * *** * * * ** consensus_5473#0 TGAGAGGGATTCTACCTTTGGGGAAGGTAGGATTCCTCGGAGCAAAGGAAATATAATGTT 496 consensus_5473#1 GCGAGGTGGTCCGCGCGCTGCTCCATACAAG-----CAAGCGCGAATTTGAGGTCGCCAT 503 * * * * * ** * * * * ** ** * * * consensus_5473#0 GAATGTTTTCGGGGAAGTGAGAGAAGTACTTCCTTGGGAAGGGAGTACTTCTTGGAGTAA 556 consensus_5473#1 GGACGGTGATGGGGCCACCGGGGCCCGGCATCTTCATCTGGTGA-------TAGGCGTAG 556 * * * * **** * * * ** * * ** * ** *** consensus_5473#0 AGGAAAACACTGCAGTTACGGTTGTAAAGAGGTTAGTCCCGTTGTTACGGAGAGTTAGCG 616 consensus_5473#1 TGGAC--CGCCGCCATGAACTTCACCAACACG--GGCCTC-------------------- 592 *** * * ** * * * ** * * * * * consensus_5473#0 ATGTTTACACTGGTGTCACGTGTACG 642 consensus_5473#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||