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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5474#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1117 fasta sequence
[CTTCCTTCCTTTTACTCGCTCGCTCGCTCGCTGGGTGTTCGTCCATTTGCCCCCAAGCCGGAGCTGCGCGACACGAGCAGCAGGAGAGAGAGAGAGAGAGAATGGGCGACCGGGCGTACGTGCCGGCATCGAAGCCGGTGCCGGTGGCGGCGGCGCGGGCGGCGAACGGGGTGGCGAACGGAGGCGGAAGAGGGGTTGGGGGTGGGGGAGGGGGAGGTGCGGCGCGACCGCCGCCCATCGGTGCCAGGGCGCGTGCTCCTGCCGCCGATGTACAAGCAGAAGCCGATGCAAGCTCCGGCTATGCGGATGCGGAGCGATCGCGGGGTGGTGCTGCGCGTTCTGCCTATGGATTACGCTTGTGGTGGTGGGGCTTGGTGTTCTAGAGGTCATCGCGGCTGGGGGTGTTCTACGTTGCGTACCACCCGCAGCTCTCCACCTTCGCCGTCACGTCTCTCCGCCTCGCCGCGCTCAACGTGTCCGACTCCGACGCCGTCACCTCCCGCATCGAGTTCACTGTCACCGCTCGTAACCCTAACGACAAGATCGCCTTCGCGTACGGCGACATCGCGGCCGCGTTCGCCGCGGACGGCGCCGACGTCGGCGACGGCACGGTCCCCGGGTTCGTCCACCCCGCCGGCAACACCACCGTCATCAAGGTGCGACGCCTCCGCCGCCGCCGCCACCGTGGACCCGCTGGTGGCGAACGGCCTCAGATCCAGGAAGTCGCACGCCATGTCGGTGGAGATGGACTCCAAGGTTGGGTTCCTGATCGTCCGCTTCAAGTCCAAGCGTATCAACGTCCGCGTCCTCTGCGCCGGCTTCACTGCCGCCCTCGCCAAGAACACCCCTTCCGCTCCACCGATCGTCGTCGCCGCCGCCCCGTCGCCGGTGAGGTCGGTCGTCAAGGCTCTCTTCTTCCTCTTCGAGCACGACGGACGCCAAGTGTAAGCTCCGGGTCAAGATCTGGATTTGGACATTTTGACGGATTTGACGGTAGAGAAGACTTCCTTCTTCCTTCTTCTACATGTTTTATTCCTCTCTCAATTTCACAACATATATATCTCTCTCTCAACAGTGATATGTGGATTTATTGGAGTATTGTTTATTTGATTTTCTT]
[+] EMBL AK067593 [CTTCCTTCCTTTTACTCGCTCGCTCGCTCGCTGGGTGTTCGTCCATTTGCCCCCAAGCCGGAGCTGCGCGACACGAGCAGCAGGAGAGAGAGAGAGAGAGAATGGGCGACCGGGCGTACGTGCCGGCATCGAAGCCGGTGCCGGTGGCGGCGGCGCGGGCGGCGAACGGGGTGGCGAACGGAGGCGGAAGAGGGGTTGGGGGTGGGGGAGGGGGAGGTGCGGCGCGACCGCCGCCCATCGGTGCCAGGGCGCGTGCTCCTGCCGCCGATGTACAAGCAGAAGCCGATGCAAGCTCCGGCTATGCGGATGCGGAGCGATCGCGGGGTGGTGCTGCGCGTTCTGCCTATGGATTACGCTTGTGGTGGTGGGGCTTGGTGTTCTAGAGGTCATCGCGGCTGGGGGTGTTCTACGTTGCGTACCACCCGCAGCTCTCCACCTTCGCCGTCACGTCTCTCCGCCTCGCCGCGCTCAACGTGTCCGACTCCGACGCCGTCACCTCCCGCATCGAGTTCACTGTCACCGCTCGTAACCCTAACGACAAGATCGCCTTCGCGTACGGCGACATCGCGGCCGCGTTCGCCGCGGACGGCGCCGACGTCGGCGACGGCACGGTCCCCGGGTTCGTCCACCCCGCCGGCAACACCACCGTCATCAAGGTGCGACGCCTCCGCCGCCGCCGCCACCGTGGACCCGCTGGTGGCGAACGGCCTCAGATCCAGGAAGTCGCACGCCATGTCGGTGGAGATGGACTCCAAGGTTGGGTTCCTGATCGTCCGCTTCAAGTCCAAGCGTATCAACGTCCGCGTCCTCTGCGCCGGCTTCACTGCCGCCCTCGCCAAGAACACCCCTTCCGCTCCACCGATCGTCGTCGCCGCCGCCCCGTCGCCGGTGAGGTCGGTCGTCAAGGCTCTCTTCTTCCTCTTCGAGCACGACGGACGCCAAGTGTAAGCTCCGGGTCAAGATCTGGATTTGGACATTTTGACGGATTTGACGGTAGAGAAGACTTCCTTCTTCCTTCTTCTACATGTTTTATTCCTCTCTCAATTTCACAACATATATATCTCTCTCTCAACAGTGATATGTGGATTTATTGGAGTATTGTTTATTTGATTTTCTT]
consensusID : consensus_5474#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 572 fasta sequence
[TTATTTTACTTATTCCGTGAGTCGGAAGCGGGGCCTGGCCCCTCCTTTTGGCTCTAAGGCCCGAGTCCCTCGGGCCGATCCGGGCGGAGCCGGCGCGGGTGGTGCTGCGCGTGCTGCCTGTGGATGACGCTGGTGGTGGTGGGGCTGGTGTTCCTGGGCGCCATCGCGGCGGGGGTGTTCTACGTGGCGTACCACCCGCAGCTCCCCACCTTCGCCGTCACGTCCCTCCGCCTCGCCGCGCTCAACGTGTCCGACTCCGACGCCGTCACCTCCCGCATCGAGTTCACCGTCACCGCCCGCAACCCCAACGACAAGATCGCCGGTGAGGTCGGTCGTCAAGGCCTCCTCCTCCTCCTCGAGCACGACGGACGCCAAGTGTAAGCTCCGGGTCAAGATCTGGATTTGGACATTTTGACGGATTTGACGGTAGAGAAGACTTCCTTCTTCCTTCTTCTTCTTGTTTTTTCCCTCTCTCAATTTTTCAACCTTTTTTTCTCTCTCTCACAGTGTATGTGGATTTATTGGAGTATAGTTTATATGATTTTTTTTTACTCAAAAAAAAAAAAAAAAAA]
[+] EMBL AK058772 [TTATTTTACTTATTCCGTGAGTCGGAAGCGGGGCCTGGCCCCTCCTTTTGGCTCTAAGGCCCGAGTCCCTCGGGCCGATCCGGGCGGAGCCGGCGCGGGTGGTGCTGCGCGTGCTGCCTGTGGATGACGCTGGTGGTGGTGGGGCTGGTGTTCCTGGGCGCCATCGCGGCGGGGGTGTTCTACGTGGCGTACCACCCGCAGCTCCCCACCTTCGCCGTCACGTCCCTCCGCCTCGCCGCGCTCAACGTGTCCGACTCCGACGCCGTCACCTCCCGCATCGAGTTCACCGTCACCGCCCGCAACCCCAACGACAAGATCGCCGGTGAGGTCGGTCGTCAAGGCCTCCTCCTCCTCCTCGAGCACGACGGACGCCAAGTGTAAGCTCCGGGTCAAGATCTGGATTTGGACATTTTGACGGATTTGACGGTAGAGAAGACTTCCTTCTTCCTTCTTCTTCTTGTTTTTTCCCTCTCTCAATTTTTCAACCTTTTTTTCTCTCTCTCACAGTGTATGTGGATTTATTGGAGTATAGTTTATATGATTT ]
[+] EMBL AU082961 [ CCTCCTCCTCGAGCACGACGGACGCCAAGTGTAAGCTCCGGGTCAAGATCTGGATTTGGACATTTTNACGGATTTNACGGTAGAGAAGACTTCCTTCTTCCTTCTTCTTCTTGTTTTTTCCCTCTCTCAATTTTTCAACCTTTTTTTCTCTCTCTCACAGTGTATGTGGATTTATTGGAGTATAGTTTATATGATTTTTTTTTACTCAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5474#0 CTTCCTTCCTTTTACTCGCTCGCTCGCTCGCTGGGTGTTCGTCCATTTGCCCCCAAGCCG 60
consensus_5474#1 ------------------------------------------------------------
consensus_5474#0 GAGCTGCGCGACACGAGCAGCAGGAGAGAGAGAGAGAGAGAATGGGCGACCGGGCGTACG 120
consensus_5474#1 ------------------------------------------------------------
consensus_5474#0 TGCCGGCATCGAAGCCGGTGCCGGTGGCGGCGGCGCGGGCGGCGAACGGGGTGGCGAACG 180
consensus_5474#1 ------------------------------------------------------------
consensus_5474#0 GAGGCGGAAGAGGGGTTGGGGGTGGGGGAGGGGGAGGTGCGGCGCGACCGCCGCCCATCG 240
consensus_5474#1 ------------------------------------------------------------
consensus_5474#0 GTGCCAGGGCGCGTGCTCCTGCCGCCGATGTACAAGCAGAAGCCGATGCAAGCTCCGGCT 300
consensus_5474#1 ------------------------------------------------------------
consensus_5474#0 ATGCGGATGCGGAGCGATCGCGGGGTGGTGCTGCGCGTTCTGCCTATGGATTACGCTTGT 360
consensus_5474#1 ------------------------------------------------------------
consensus_5474#0 GGTGGTGGGGCTTGGTGTTCTAGAGGTCATCGCGGCTGGGGGTGTTCTACGTTGCGTACC 420
consensus_5474#1 ------------------------------------------------------------
consensus_5474#0 ACCCGCAGCTCTCCACCTTCGCCGTCACGTCTCTCCGCCTCGCCGCGCTCAACGTGTCCG 480
consensus_5474#1 ------------------------------------------------------------
consensus_5474#0 ACTCCGACGCCGTCACCTCCCGCATCGAGTTCACTGTCACCGCTCGTAACCCTAACGACA 540
consensus_5474#1 ------------------------------------------------------------
consensus_5474#0 AGATCGCCTTCGCGTACGGCGACATCGCG-GCCGCGTTCGCCGCGGACGGCGCCGACGTC 599
consensus_5474#1 -------------------TTATTTTACTTATTCCGTGAGTCGGAAGCGGGGCCTG-GCC 40
* * * *** * ** *** *** * *
consensus_5474#0 GGCGACGGCACGGTCCCCGGGTTCGTCCACCCCGCCGGCAACACCACCGTCATCAAGGTG 659
consensus_5474#1 --CCTCCTTTTGGCTCTAAGGCCCGAGTCCCTCGG-GCCGATCCGGGCGGAGCCGGCGCG 97
* * ** * ** ** ** ** * * * * ** * * *
consensus_5474#0 CGACGCCTCCGCCGCCGCCGCCACCGTGGACC-CGCTGGTGGCGAACGGCCTCAGATCCA 718
consensus_5474#1 -GGTGGTGCTGCGCGTGCTGCC--TGTGGATGACGCTGGTGGTGGTGGGGCTGGTGTTC- 153
* * * ** ** *** ***** ********* * ** ** * *
consensus_5474#0 GGAAGTCGCACGCCATGTCGGTGGAGATGGACTCCAAGGTTGGGTTCCTGA---TCGTCC 775
consensus_5474#1 -----CTGGGCGCCATCGCGGCGGGGGTGTTCTACGTGGCGTACCACCCGCAGCTCCCCA 208
* ****** *** ** * ** ** * ** ** * ** *
consensus_5474#0 GCTTCAAGTCCAAGCGTATCAACGTCCGCGTCCTCTGCGCCGGCTTCACTGCCGCCCTCG 835
consensus_5474#1 CCTTCGCCGTCACGTCCCTCCGCCTCGCCGCGCTCAACGTGTCCGACTCCGACGCCGTCA 268
**** ** * ** * ** ** *** ** * * * * **** **
consensus_5474#0 CCAAGAACACCCCTTCCGCT-CCACCGATCGTCGTCGCCGCCGCCCCGTCGCCGGTGAGG 894
consensus_5474#1 CCTCCCGCATCGAGTTCACCGTCACCGCCCGCAACCCCAACGACAAGATCGCCGGTGAGG 328
** ** * * * * ***** ** * * * * ************
consensus_5474#0 TCGGTCGTCAAGGCTCTCTTCTTCCTCTTCGAGCACGACGGACGCCAAGTGTAAGCTCCG 954
consensus_5474#1 TCGGTCGTCAAGGC-CTCCTCCTCCTCCTCGAGCACGACGGACGCCAAGTGTAAGCTCCG 387
************** *** ** ***** ********************************
consensus_5474#0 GGTCAAGATCTGGATTTGGACATTTTGACGGATTTGACGGTAGAGAAGACTTCCTTCTTC 1014
consensus_5474#1 GGTCAAGATCTGGATTTGGACATTTTGACGGATTTGACGGTAGAGAAGACTTCCTTCTTC 447
************************************************************
consensus_5474#0 CTTCTTCTACATGTTTTATTCCTCTCTCAATTTCACAACATATATATCTCTCTCTCAACA 1074
consensus_5474#1 CTTCTTCTTCTTGTTTTTTCCCTCTCTCAATTTTTCAACCTTTTTTTCTCTCTCTCA-CA 506
******** * ****** * ************* **** * * * *********** **
consensus_5474#0 GTGATATGTGGATTTATTGGAGTATTGTTTATTTGATTTTCTT----------------- 1117
consensus_5474#1 GTG-TATGTGGATTTATTGGAGTATAGTTTATATGATTTTTTTTTACTCAAAAAAAAAAA 565
*** ********************* ****** ******* **
consensus_5474#0 -------
consensus_5474#1 AAAAAAA 572
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||