These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5475#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence [ATCGTAGGCTTGTTAGAAAAGATCGCTCAAAATGGCTTCTAGGTCTCTTGTGTTGATGTTAGTGTTGATGGTTTCTCTTGTCATCGTCTCGCAGGGTGTCCTTGCTGCAAGGGAGCTTGCAGAGAAAACCAAAGTGGATGTAGATGGAATGAATGTCGACCTTCCTAAAGGCCGCAAAGGTGCAGTTGCAGTCTCAGGGTACGGTGGTGGTTGGTCAGGGTCATACGGTGGCAGACACTATCCATGATACCCCTAAATATCATGGATATATAAGGATTAATTTAGCTTAATTAACCCCTTGTATATGTGCTCCTATTGTACTGTGTATTTACATGTGTTGTGTTTGTATTAAAGTTACATTTGTTGGGTCAGTCTATAGGGTACTCGTTGATTCAGTTTAAATCAACTAAACCAGAAAAATGTAGCTTCCAAGCTCATATTGTATGTTTGTTTGATATCCTTTCATAGTTTTAATACATCAGGTAATTATTAGCCTTAGAAGAACATTCCACCTTGTATTTAGCACGTTTATGATGACAAGTCCTATATATTTATAAAGTTTGTTTTCA] [+] EMBL CA764981 [ATCGTAGGCTTGTTAGAAAAGATCGCTCAAAATGGCTTCTAGGTCTCTTGTGTTGATGTTAGTGTTGATGGTTTCTCTTGTCATCGTCTCGCAGGGTGTCCTTGCTGCAAGGGAGCTTGCAGAGAAAACCAAAGTGGATGTAGATGGAATGAATGTCGACCTTCCTAAAGGCCGCAAAGGTGCAGTTGCAGTCTCAGGGTACGGTGGTGGTTGGTCAGGGTCATACGGTGGCAGACACTATCCATGATACCCCTAAATATCATGGATATATAAGGATTAATTTAGCTTAATTAACCCCTTGTATATGTGCTCCTATTGTACTGTGTATTTACATGTGTTGTGTTTGTATTAAAGTTACATTTGTTGGGTCAGTCTATAGGGTACTCGTTGATTCAGTTTAAATCAACTAAACCAGAAAAATGTAGCTTCCAAGCTCATATTGTATGTTTGTTTGATATCCTTTCATAGTTTTAATACATCAGGTAATTATTAGCCTTAGAAGAACATTCCACCTTGTATTTAGCACGTTTATGATGACAAGTCCTATATATTTATAAAGTTTGTTTTCA] consensusID : consensus_5475#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [AAAAACCATTCCACCAGTCGCAAATCCTCTCTTAATTAGCTACCACCTAGCTTGGCACCAACAATTCAACTTTTACACTCATACCTGCTATCTCACTATATATAAGATGTCTCATGGGTTTCATGGTGTCCCAATCGTACATGCTTATTTCAAAACTCAGCTCAAAATGGCTTCTAGGTCTCCTGTGCTGCTGTTTGCGTTGATGGTTTGTCTTGTCATCGTCTCGCAGGGTGTCCTCGCTGCAAGGGAGCTTGTCGAGACAACCAAAGTTGAGGTAGATGGAATGAAAGTTGAGCTTCCTGAAGCCGCAAAGGTGCAGCTGCTGTCTCGGGGTATGGAGGCGGCTGGCCAGGGACATACGGACACTATCCATGATACCATTGTATATTCTGGATATATAAAAGGATTAATTTAGCTTAACCGTGTATATGTGCATCTATTTTATTGTGTATTTAGAATGTGTTGTATCGTTATAAATCTTTAATTTTACACATGTATTTAAAGAAAAAAAAAA] [+] EMBL BI811701 [AAAAACCATTCCACCAGTCGCAAATCCTCTCTTAATTAGCTACCACCTAGCTTGGCACCAACAATTCAACTTTTACACTCATACCTGCTATCTCACTATATATAAGATGTCTCATGGGTTTCATGGTGTCCCAATCGTACATGCTTATTTCAAAACTCAGCTCAAAATGGCTTCTAGGTCTCCTGTGCTGCTGTTTGCGTTGATGGTTTGTCTTGTCATCGTCTCGCAGGGTGTCCTCGCTGCAAGGGAGCTTGTCGAGACAACCAAAGTTGAGGTAGATGGAATGAAAGTTGAGCTTCCTGAAGCCGCAAAGGTGCAGCTGCTGTCTCGGGGTATGGAGGCGGCTGGCCAGGGACATACGGACACTATCCATGATACCATTGTATATTCTGGATATATAAAAGGATTAATTTAGCTTAACCGTGTATATGTGCATCTATTTTATTGTGTATTTAGAATGTGTTGTATCGTTATAAATCTTTAATTTTACACATGTATTTAAAGAAAAAAAAAA] consensusID : consensus_5475#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 316 fasta sequence [TTGTACATGCTTATTTCAAAAACTCAGCTCAAAATGGCTTCTAGGTCTCCTGTGCTGCTGTTTGCGTTGATGGTTTGTCTTGTCATCGTCTCGCAGGGTGTCCTCGCTGCAAGGGAGCTTGTCGAGACAACCAAAGTTGTGGTAGATGGAATGAAAGTTGAGCTTCCTGAAGGCCGCAAAGGTGCAGCTGCTGTCTCGGGGTATGGAGGCGGCTGGCCAGGGACATACGGACACTATCCATGATACAATTGTATATTCTGGATATATAAAAGGATTAATTTAGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAATA] [+] EMBL CF314137 [TTGTACATGCTTATTTCAAAAACTCAGCTCAAAATGGCTTCTAGGTCTCCTGTGCTGCTGTTTGCGTTGATGGTTTGTCTTGTCATCGTCTCGCAGGGTGTCCTCGCTGCAAGGGAGCTTGTCGAGACAACCAAAGTTGTGGTAGATGGAATGAAAGTTGAGCTTCCTGAAGGCCGCAAAGGTGCAGCTGCTGTCTCGGGGTATGGAGGCGGCTGGCCAGGGACATACGGACACTATCCATGATACAATTGTATATTCTGGATATATAAAAGGATTAATTTAGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5475#1 AAAAACCATTCCACCAGTCGCAAATCCTCTCTTAATTAGCTACCACCTAGCTTGGCACCA 60 consensus_5475#2 ------------------------------------------------------------ consensus_5475#0 ------------------------------------------------------------ consensus_5475#1 ACAATTCAACTTTTACACTCATACCTGCTATCTCACTATATATAAGATGTCTCATGGGTT 120 consensus_5475#2 ------------------------------------------------------------ consensus_5475#0 ------------------------------------------------------------ consensus_5475#1 TCATGGTGTCCCAATCGTACATGCTTATTTCAAAA-CTCAGCTCAAAATGGCTTCTAGGT 179 consensus_5475#2 --------------TTGTACATGCTTATTTCAAAAACTCAGCTCAAAATGGCTTCTAGGT 46 consensus_5475#0 -------------ATCGTA--GGCTTGTTAGAAAAGATC-GCTCAAAATGGCTTCTAGGT 44 * *** **** ** **** ** ******************** consensus_5475#1 CTCCTGTGCTGCTGTTTGCGTTGATGGTTTGTCTTGTCATCGTCTCGCAGGGTGTCCTCG 239 consensus_5475#2 CTCCTGTGCTGCTGTTTGCGTTGATGGTTTGTCTTGTCATCGTCTCGCAGGGTGTCCTCG 106 consensus_5475#0 CTCTTGTGTTGATGTTAGTGTTGATGGTTTCTCTTGTCATCGTCTCGCAGGGTGTCCTTG 104 *** **** ** **** * *********** *************************** * consensus_5475#1 CTGCAAGGGAGCTTGTCGAGACAACCAAAGTTGAGGTAGATGGAATGAAAGTTGAGCTTC 299 consensus_5475#2 CTGCAAGGGAGCTTGTCGAGACAACCAAAGTTGTGGTAGATGGAATGAAAGTTGAGCTTC 166 consensus_5475#0 CTGCAAGGGAGCTTGCAGAGAAAACCAAAGTGGATGTAGATGGAATGAATGTCGACCTTC 164 *************** **** ********* * ************** ** ** **** consensus_5475#1 CTGAAG-CCGCAAAGGTGCAGCTGCTGTCTCGGGGTATGGAGGCGGCTGGCCAGGGACAT 358 consensus_5475#2 CTGAAGGCCGCAAAGGTGCAGCTGCTGTCTCGGGGTATGGAGGCGGCTGGCCAGGGACAT 226 consensus_5475#0 CTAAAGGCCGCAAAGGTGCAGTTGCAGTCTCAGGGTACGGTGGTGGTTGGTCAGGGTCAT 224 ** *** ************** *** ***** ***** ** ** ** *** ***** *** consensus_5475#1 ACGG------ACACTATCCATGATACCATTGTATATTCTGGATATATAAAAGGATTAATT 412 consensus_5475#2 ACGG------ACACTATCCATGATACAATTGTATATTCTGGATATATAAAAGGATTAATT 280 consensus_5475#0 ACGGTGGCAGACACTATCCATGATACCCCTAAATATCATGGATATATAA--GGATTAATT 282 **** **************** * **** *********** ********* consensus_5475#1 TAGCTTAA------CCGTGTATATGTGCATCTATTTTATTGTGTATTTAGAATGTGTTGT 466 consensus_5475#2 TAGCTTAA------AAAAAAAAAAAAAAAAAAAA---AAAAAATA--------------- 316 consensus_5475#0 TAGCTTAATTAACCCCTTGTATATGTGCTCCTATTGTACTGTGTATTTACA-TGTGTTGT 341 ******** * * * * ** consensus_5475#1 ATCGTTATAAATCTTTAATTTTACACATGTATTTAAAGAAAAAAAAAA------------ 514 consensus_5475#2 ------------------------------------------------------------ consensus_5475#0 GTTTGTATTAAAGTTACATTTGTTGGGTCAGTCTATAGGGTACTCGTTGATTCAGTTTAA 401 consensus_5475#1 ------------------------------------------------------------ consensus_5475#2 ------------------------------------------------------------ consensus_5475#0 ATCAACTAAACCAGAAAAATGTAGCTTCCAAGCTCATATTGTATGTTTGTTTGATATCCT 461 consensus_5475#1 ------------------------------------------------------------ consensus_5475#2 ------------------------------------------------------------ consensus_5475#0 TTCATAGTTTTAATACATCAGGTAATTATTAGCCTTAGAAGAACATTCCACCTTGTATTT 521 consensus_5475#1 ------------------------------------------------ consensus_5475#2 ------------------------------------------------ consensus_5475#0 AGCACGTTTATGATGACAAGTCCTATATATTTATAAAGTTTGTTTTCA 569 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||