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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5480#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1093 fasta sequence
[TAAGCTCGGGAATCCTAAGTAAGTGAAAGCTTAGCTAGCTTCGCATAAATCCAGCTCTCTCTTGCTAATGGCGGGCGTCGAGGTCTCCAAGCCGTCGAGGCGCCTGTCGCCGAAGGGGAGCTTCAAGCTGAGCCTGCCCAGCCTGCTGGCGTGCGGGCAGTGCAAGGCCACGGCCGTCTCGCCGCCGGAGTCCCCCACGGGCGTCGGCGCGAGGTCGTTCTCCTCGTCGGCGTCGTCGTCGGCGGGGACGTCCCGGGGGAGGGAGCGCGACCGCCTGGCGGAGCTCCGGGAGATCTTCGGCCACTTCGACCGCGACATGGACGGGCGGATCTCCGGCGACGAGCTCCGCGAGTTCTTCGCGTCCATGGGCGACGACTCC---GGCGCCGCC-GCCGCCGCCGCCG-CGGCGATGGG-GCTCGACGGCGCGGCGGGCGGCGGCGAGAGCGGCGGCGGCGGTGGCGGGCTGATGCTGGCGTTCGAGGACTTCGTGCGGATCGTGGAGCGGAAGGG-CGGGGAGGAGGAGGAGCGGGAGGACCTGCGGCGCGCGTTCGGGGCGTTCGAGGCGGTGAA-GGGGTCCGGGAGGATCACGCCGCGCGGGCTGCAGCGCGTGCTCAGCCAGCTCGGCGACGAGGCGTCCGTCGCCGAGTGCGAGGCCATGATAAGCGCCTACGACGACGACGGCGACGGCGAGCTCGACTTCCACGACTTCCACCGCATGATGAGCCAAGACTAAGCTATAGCTCCGCCGTGCGTGCGTGTTCCGCGCGCGCCGTCCGTCGCCGCGTCGTCACGAGGAAATTTGCCTCCGCGGGTTCGATCGTGTCTGTTCGTGTGTGTGCTGTTGTGTACGTGTTCGTGCGGGTTGTGGGAGGCCGGCTGTGACTATGTGAGATGGAGTGTGTGTTTTGGTCGCGTGATCGTATCGATGTGCGTGCGTGCGTGCGTGCGTGCACGCCGCGCGCGGCGCGGCGTCGTACGGTTGTCTGCTTCGATCGGTCGATCTATGTATGTGGTGCACGAACGCGGGACGCCTTAGCAATTTAGCTGTGCTTTGTTTAACACGAAGCCAGCATGAGTACTAGTAAAAAAAATTCCC]
[+] EMBL AK108944 [TAAGCTCGGGAATCCTAAGTAAGTGAAAGCTTAGCTAGCTTCGCATAAATCCAGCTCTCTCTTGCTAATGGCGGGCGTCGAGGTCTCCAAGCCGTCGAGGCGCCTGTCGCCGAAGGGGAGCTTCAAGCTGAGCCTGCCCAGCCTGCTGGCGTGCGGGCAGTGCAAGGCCACGGCCGTCTCGCCGCCGGAGTCCCCCACGGGCGTCGGCGCGAGGTCGTTCTCCTCGTCGGCGTCGTCGTCGGCGGGGACGTCCCGGGGGAGGGAGCGCGACCGCCTGGCGGAGCTCCGGGAGATCTTCGGCCACTTCGACCGCGACATGGACGGGCGGATCTCCGGCGACGAGCTCCGCGAGTTCTTCGCGTCCATGGGCGACGACTCC GGCGCCGCC GCCGCCGCCGCCG CGGCGATGGG GCTCGACGGCGCGGCGGGCGGCGGCGAGAGCGGCGGCGGCGGTGGCGGGCTGATGCTGGCGTTCGAGGACTTCGTGCGGATCGTGGAGCGGAAGGG CGGGGAGGAGGAGGAGCGGGAGGACCTGCGGCGCGCGTTCGGGGCGTTCGAGGCGGTGAA GGGGTCCGGGAGGATCACGCCGCGCGGGCTGCAGCGCGTGCTCAGCCAGCTCGGCGACGAGGCGTCCGTCGCCGAGTGCGAGGCCATGATAAGCGCCTACGACGACGACGGCGACGGCGAGCTCGACTTCCACGACTTCCACCGCATGATGAGCCAAGACTAAGCTATAGCTCCGCCGTGCGTGCGTGTTCCGCGCGCGCCGTCCGTCGCCGCGTCGTCACGAGGAAATTTGCCTCCGCGGGTTCGATCGTGTCTGTTCGTGTGTGTGCTGTTGTGTACGTGTTCGTGCGGGTTGTGGGAGGCCGGCTGTGACTATGTGAGATGGAGTGTGTGTTTTGGTCGCGTGATCGTATCGATGTGCGTGCGTGCGTGCGTGCGTGCACGCCGCGCGCGGCGCGGCGTCGTACGGTTGTCTGCTTCGATCGGTCGATCTATGTATGTGGTGCACGAACGCGGGACGCCTTAGCAATTTAGCTGTGCTTTGTTTAACACGAAGCCAGCATGAGTACTAGTAAAAAAAATTCCC]
[+] EMBL CA754937 [ AGCTAGCTTCGCATAAATCCAGCTCTCTCTTGCTAATGGCGGGCGTCGAGGTCTCCAAGCCGTCGAGGCGCCTGTCGCCGAAGGGGAGCTTCAAGCTGAGCCTGCCCAGCCTGCTGGCGTGCGGGCAGTGCAAGGCCACGGCCGTCTCGCCGCCGGAGTCCCCCACGGGCGTCGGCGCGAGGTCGTTCTCCTCGTCGGCGTCGTCGTCGGCGGGGACGTCCCGGGGGAGGGAGCGCGACCGCCTGGCGGAGCTCCGGGAGATCTTCGGCCACTTCGACCGCGACATGGACGGGCGGATCTCCGGCGACGAGCTCCGCGAGTTCTTCGCGTCCATGGGCGACGACCCCGNNGGCG GGCCGGCCGGCGNCGNCGNNGGNGATGGGNGCTCGACGGCGCGGCGGGCGGCGGCGAGAGCGGCGGCGGCGGTGGCGGGCTGATGCTGGCGTTCGAGGACTTCGTGCGGATCGTGGAGCGGAAGGGCCGGGAAGAAGAAGAANCGNNAGGACCTGNCGCGCGCGTTCGGGGCGTTCGAGGCGGTGAAGGGGGTCCGGGA GATCACGCCGCGCGGGCTGCAGNGCGTGCTCA CCAGCTCGGGGACAAAGCGTCCGTCGCCGAGTGCGA ]
consensusID : consensus_5480#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence
[GGCACGAGGGGAATCCTAAGTAAGTGAAAGCTTAGCTAGCTTCGCATAAATCCAGCTCTCTCTTGCTAATGGCGGGCGTCCAGGTCTCCAAGCCGTCGAGGCGCCTGTCGCCGAAGGGGAGCTTCAAGCTGAGCCTGCCCAGCCTGCTGGCGTGCGGGCAGTGCAAGGCCACGGNCGTCTCGCCGCCGGAGTCCCCCACGGGCGTCGGCGCGAGGTCGTTCTCCTCGTCGGCGTCGTCGTCGGCGGGGACGTCCCGGGGGAGGGAGCGCGACCGCCTGGCGGAGCTCCGGGANATCTTCCGCCACTTCGACCGCGACATGGACGGGCGGATCTCCGGCGACNAGCTCCNCGAGTTCTTCACGTCCATGGGCGACAACTCCGGCGCCNCCGCCGCCGCCGCCGCGGCGATGGGGCTCNACAGCGCGGCGGGCGGNNGCAAAAACGGCNGCGGCGGTGGCNGGCTGATCTGGCGTTCGANGACTTCNTGCGGATCGTGTNAACGGAACGGCGGGGANGAAGACGAACGGGGANGACCTGACCGCCCCGCGTTCGGGGCGTNCGANGCAGTGAANGGGTCCNGGAAGATACGCCCGCGG]
[+] EMBL AA751542 [GGCACGAGGGGAATCCTAAGTAAGTGAAAGCTTAGCTAGCTTCGCATAAATCCAGCTCTCTCTTGCTAATGGCGGGCGTCCAGGTCTCCAAGCCGTCGAGGCGCCTGTCGCCGAAGGGGAGCTTCAAGCTGAGCCTGCCCAGCCTGCTGGCGTGCGGGCAGTGCAAGGCCACGGNCGTCTCGCCGCCGGAGTCCCCCACGGGCGTCGGCGCGAGGTCGTTCTCCTCGTCGGCGTCGTCGTCGGCGGGGACGTCCCGGGGGAGGGAGCGCGACCGCCTGGCGGAGCTCCGGGANATCTTCCGCCACTTCGACCGCGACATGGACGGGCGGATCTCCGGCGACNAGCTCCNCGAGTTCTTCACGTCCATGGGCGACAACTCCGGCGCCNCCGCCGCCGCCGCCGCGGCGATGGGGCTCNACAGCGCGGCGGGCGGNNGCAAAAACGGCNGCGGCGGTGGCNGGCTGATCTGGCGTTCGANGACTTCNTGCGGATCGTGTNAACGGAACGGCGGGGANGAAGACGAACGGGGANGACCTGACCGCCCCGCGTTCGGGGCGTNCGANGCAGTGAANGGGTCCNGGAAGATACGCCCGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5480#0 -TAAGCTCGGGAATCCTAAGTAAGTGAAAGCTTAGCTAGCTTCGCATAAATCCAGCTCTC 59
consensus_5480#1 GGCACGAGGGGAATCCTAAGTAAGTGAAAGCTTAGCTAGCTTCGCATAAATCCAGCTCTC 60
* ****************************************************
consensus_5480#0 TCTTGCTAATGGCGGGCGTCGAGGTCTCCAAGCCGTCGAGGCGCCTGTCGCCGAAGGGGA 119
consensus_5480#1 TCTTGCTAATGGCGGGCGTCCAGGTCTCCAAGCCGTCGAGGCGCCTGTCGCCGAAGGGGA 120
******************** ***************************************
consensus_5480#0 GCTTCAAGCTGAGCCTGCCCAGCCTGCTGGCGTGCGGGCAGTGCAAGGCCACGGCCGTCT 179
consensus_5480#1 GCTTCAAGCTGAGCCTGCCCAGCCTGCTGGCGTGCGGGCAGTGCAAGGCCACGGNCGTCT 180
****************************************************** *****
consensus_5480#0 CGCCGCCGGAGTCCCCCACGGGCGTCGGCGCGAGGTCGTTCTCCTCGTCGGCGTCGTCGT 239
consensus_5480#1 CGCCGCCGGAGTCCCCCACGGGCGTCGGCGCGAGGTCGTTCTCCTCGTCGGCGTCGTCGT 240
************************************************************
consensus_5480#0 CGGCGGGGACGTCCCGGGGGAGGGAGCGCGACCGCCTGGCGGAGCTCCGGGAGATCTTCG 299
consensus_5480#1 CGGCGGGGACGTCCCGGGGGAGGGAGCGCGACCGCCTGGCGGAGCTCCGGGANATCTTCC 300
**************************************************** ******
consensus_5480#0 GCCACTTCGACCGCGACATGGACGGGCGGATCTCCGGCGACGAGCTCCGCGAGTTCTTCG 359
consensus_5480#1 GCCACTTCGACCGCGACATGGACGGGCGGATCTCCGGCGACNAGCTCCNCGAGTTCTTCA 360
***************************************** ****** **********
consensus_5480#0 CGTCCATGGGCGACGACTCCGGCGCCGCCGCCGCCGCCGCCGCGGCGATGGGGCTCGACG 419
consensus_5480#1 CGTCCATGGGCGACAACTCCGGCGCCNCCGCCGCCGCCGCCGCGGCGATGGGGCTCNACA 420
************** *********** ***************************** **
consensus_5480#0 GCGCGGCGGGCGGCGGCGAGAGCGGCGGCGGCGGTGGCGGGCTGATGCTGGCGTTCGAGG 479
consensus_5480#1 GCGCGGCGGGCGGNNGCAAAAACGGCNGCGGCGGTGGCNGGCTGAT-CTGGCGTTCGANG 479
************* ** * * **** *********** ******* *********** *
consensus_5480#0 ACTTCGTGCGGATCGTG-GAGCGGAAGGGCGGGGAGGAGGAGGAGCGGG-AGGACCTG-- 535
consensus_5480#1 ACTTCNTGCGGATCGTGTNAACGGAACGGCGGGGANGAAGACGAACGGGGANGACCTGAC 539
***** *********** * ***** ******** ** ** ** **** * ******
consensus_5480#0 CGGCGCGCGTTCGGGGCGTTCGAGGCGGTGAAGGGGTCCGGGAGGATCACGCCGCGCGGG 595
consensus_5480#1 CGCCCCGCGTTCGGGGCGTNCGANGCAGTGAANGGGTCCNGGAAGAT-ACGCC-CGCGG- 596
** * ************** *** ** ***** ****** *** *** ***** *****
consensus_5480#0 CTGCAGCGCGTGCTCAGCCAGCTCGGCGACGAGGCGTCCGTCGCCGAGTGCGAGGCCATG 655
consensus_5480#1 ------------------------------------------------------------
consensus_5480#0 ATAAGCGCCTACGACGACGACGGCGACGGCGAGCTCGACTTCCACGACTTCCACCGCATG 715
consensus_5480#1 ------------------------------------------------------------
consensus_5480#0 ATGAGCCAAGACTAAGCTATAGCTCCGCCGTGCGTGCGTGTTCCGCGCGCGCCGTCCGTC 775
consensus_5480#1 ------------------------------------------------------------
consensus_5480#0 GCCGCGTCGTCACGAGGAAATTTGCCTCCGCGGGTTCGATCGTGTCTGTTCGTGTGTGTG 835
consensus_5480#1 ------------------------------------------------------------
consensus_5480#0 CTGTTGTGTACGTGTTCGTGCGGGTTGTGGGAGGCCGGCTGTGACTATGTGAGATGGAGT 895
consensus_5480#1 ------------------------------------------------------------
consensus_5480#0 GTGTGTTTTGGTCGCGTGATCGTATCGATGTGCGTGCGTGCGTGCGTGCGTGCACGCCGC 955
consensus_5480#1 ------------------------------------------------------------
consensus_5480#0 GCGCGGCGCGGCGTCGTACGGTTGTCTGCTTCGATCGGTCGATCTATGTATGTGGTGCAC 1015
consensus_5480#1 ------------------------------------------------------------
consensus_5480#0 GAACGCGGGACGCCTTAGCAATTTAGCTGTGCTTTGTTTAACACGAAGCCAGCATGAGTA 1075
consensus_5480#1 ------------------------------------------------------------
consensus_5480#0 CTAGTAAAAAAAATTCCC 1093
consensus_5480#1 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||